Rh3DG007600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018569
Physical Location & Seq
Forward (+)
496044 .. 496328
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG007600.1

Sequence Viewer

Length: 285 bp
ATGGCTGGTCCGGCTAGAAGAGTGGCCTCGCAGGAGATGACGAAAATTCCTGAGCCAACGACAGAGCCGAAGCCGAGCCAGATGAGGTCCCGCCAGGTGAGGCAGCGGTGCATGTGGTGCTCGCTTTGCTTGGGGAGGTGGAGGAGCTCGAAGGAGTCGGAGAAGCGGTTGAGGAGGCGGTCCTTGAGGCGAGATGGGGTGTGGGAGAGGGCGTCTTTGGAGGAACTCAAGTTGTGGAAAGTGGGTTCCGAGAAGAAGTCCTGCTTGGTCCATCTTTTCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

11.16

Weight (kDa)

10.86

Isoelectric Point (pI)

105.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 91, 106, 166, 178
AcsI RAATTY 1 cut(s) 45
AcyI GRCGYC 1 cut(s) 212
AjnI CCWGG 1 cut(s) 93
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AloI GAACNNNNNNTCC 2 cut(s) 229, 261
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw21I GWGCWC 2 cut(s) 122, 149
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 45
AspS9I GGNCC 4 cut(s) 8, 87, 180, 268
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 4 cut(s) 8, 87, 180, 268
BanII GRGCYC 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 122, 149
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 188, 279
BciT130I CCWGG 1 cut(s) 95
BfaI CTAG 1 cut(s) 15
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 4 cut(s) 8, 87, 180, 268
BmgT120I GGNCC 4 cut(s) 8, 87, 180, 268
BmiI GGNNCC 2 cut(s) 89, 247
BmrFI CCNGG 1 cut(s) 95
Bpu10I CCTNAGC 1 cut(s) 51
BpuEI CTTGAG 2 cut(s) 205, 212
BsaHI GRCGYC 1 cut(s) 212
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 197, 227
Bse1I ACTGG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 2 cut(s) 157, 187
BseXI GCAGC 1 cut(s) 115
BshFI GGCC 1 cut(s) 26
BsiHKAI GWGCWC 2 cut(s) 122, 149
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 122, 149
BspACI CCGC 4 cut(s) 91, 106, 166, 178
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 89, 247
BsrI ACTGG 1 cut(s) 280
BssNI GRCGYC 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 13
BstACI GRCGYC 1 cut(s) 212
BstAPI GCANNNNNTGC 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 51
BstMWI GCNNNNNNNGC 3 cut(s) 11, 117, 126
BstNI CCWGG 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 122
Cfr13I GGNCC 4 cut(s) 8, 87, 180, 268
CseI GACGC 1 cut(s) 201
CviAII CATG 1 cut(s) 112
CviJI RGCY 8 cut(s) 5, 14, 26, 55, 67, 73, 78, 147
CviKI_1 RGCY 8 cut(s) 5, 14, 26, 55, 67, 73, 78, 147
DdeI CTNAG 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 149
Eco47I GGWCC 4 cut(s) 8, 87, 180, 268
Eco53kI GAGCTC 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 149
FaeI CATG 1 cut(s) 115
FaiI YATR 1 cut(s) 113
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 1 cut(s) 73
FatI CATG 1 cut(s) 111
FauI CCCGC 1 cut(s) 98
Fnu4HI GCNGC 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 1 cut(s) 15
GluI GCNGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 11
HgaI GACGC 1 cut(s) 201
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 1 cut(s) 115
HinfI GANTC 1 cut(s) 155
HpaII CCGG 1 cut(s) 11
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 160, 250
Hpy188III TCNNGA 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 117, 126
HpyF3I CTNAG 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 1 cut(s) 115
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 7 cut(s) 17, 24, 63, 80, 92, 107, 274
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 1 cut(s) 15
MboII GAAGA 2 cut(s) 30, 265
MhlI GDGCHC 2 cut(s) 122, 149
MluCI AATT 1 cut(s) 45
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 106
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 3 cut(s) 11, 117, 126
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 2 cut(s) 89, 247
NmeAIII GCCGAG 1 cut(s) 99
NspI RCATGY 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PpuMI RGGWCCY 1 cut(s) 87
Psp124BI GAGCTC 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 2 cut(s) 89, 247
PspPI GGNCC 4 cut(s) 8, 87, 180, 268
PspPPI RGGWCCY 1 cut(s) 87
SacI GAGCTC 1 cut(s) 149
SatI GCNGC 1 cut(s) 104
Sau96I GGNCC 4 cut(s) 8, 87, 180, 268
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 2 cut(s) 122, 149
SetI ASST 4 cut(s) 89, 99, 140, 149
SinI GGWCC 4 cut(s) 8, 87, 180, 268
SmlI CTYRAG 2 cut(s) 184, 227
SmoI CTYRAG 2 cut(s) 184, 227
Sse9I AATT 1 cut(s) 45
SsiI CCGC 4 cut(s) 91, 106, 166, 178
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 93
TaqI TCGA 1 cut(s) 149
TasI AATT 1 cut(s) 45
TseI GCWGC 1 cut(s) 103
VpaK11BI GGWCC 4 cut(s) 8, 87, 180, 268
XapI RAATTY 1 cut(s) 45
XceI RCATGY 1 cut(s) 115
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.