Rh6AG111000

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018569
Physical Location & Seq
Forward (+)
16222789 .. 16283729
60941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG111000.1

Sequence Viewer

Length: 453 bp
ATGGCGGGTCCGGCTAGAAGAGTGGCCTCGCCGGCGATGACGAAAATTCCGGAGCCGACGACAGAGCCGAGCCAGATGATGTCCCGCCAGACTAAGAGAATGAAGGAGAAGGAAGAGATGAGAGCACCTGCAACAAAAGTTACCAGGATATTTGTTGCAAGGATCCCACAATCTGTGACAGAAGCAAAATTTCAAAGTCATTTTGGGAAATATGGAGAGATAAGAGATTTATACATGCCGAAGGATCAAGGCTCAAAAATGCATCGAGGAATTGGGTTTATTACCTTTGAAAATGCAGACTCCGTGGAAAATTTAATGGCTGATACCCATGAATTGGGGGGTTCCAATGAAGATGACTTTAAACCAGTGGGCAGAATGCCAGCACCACAGGGTGGATATGGTGCATACAATTCATCATTGTTAAGACATTGTCAAATTTCATCAAATCACTAA

Protein Analysis

150

Amino Acids

16.75

Weight (kDa)

9.3

Isoelectric Point (pI)

66.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 50 - 107 6.6e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 136
Acc36I ACCTGC 1 cut(s) 136
AccB7I CCANNNNNTGG 2 cut(s) 334, 392
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 2 cut(s) 5, 85
AclWI GGATC 3 cut(s) 157, 170, 252
AcsI RAATTY 4 cut(s) 45, 188, 310, 435
AdeI CACNNNGTG 1 cut(s) 392
AfiI CCNNNNNNNGG 2 cut(s) 334, 392
AgsI TTSAA 2 cut(s) 194, 290
AjnI CCWGG 1 cut(s) 143
Alw21I GWGCWC 1 cut(s) 127
AlwI GGATC 3 cut(s) 157, 170, 252
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 1 cut(s) 24
ApoI RAATTY 4 cut(s) 45, 188, 310, 435
AspS9I GGNCC 1 cut(s) 8
AvaII GGWCC 1 cut(s) 8
BamHI GGATCC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 145
BfaI CTAG 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 136
BglI GCCNNNNNGGC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 4 cut(s) 9, 54, 164, 343
BmrFI CCNGG 1 cut(s) 145
BmsI GCATC 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 303
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 392
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 365
BseAI TCCGGA 1 cut(s) 49
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 334, 392
BseNI ACTGG 1 cut(s) 365
BshFI GGCC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 3 cut(s) 11, 32, 50
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 334, 392
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 381
BsnI GGCC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 127
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 2 cut(s) 162, 244
BspACI CCGC 2 cut(s) 5, 85
BspANI GGCC 1 cut(s) 26
BspEI TCCGGA 1 cut(s) 49
BspLI GGNNCC 4 cut(s) 9, 54, 164, 343
BspMI ACCTGC 1 cut(s) 136
BspPI GGATC 3 cut(s) 157, 170, 252
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 1 cut(s) 365
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 2 cut(s) 162, 244
Bst2UI CCWGG 1 cut(s) 145
Bst6I CTCTTC 2 cut(s) 13, 108
BstC8I GCNNGC 2 cut(s) 33, 381
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 303
BstKTI GATC 2 cut(s) 165, 247
BstMBI GATC 2 cut(s) 162, 244
BstMWI GCNNNNNNNGC 2 cut(s) 11, 32
BstNI CCWGG 1 cut(s) 145
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 303
BtgZI GCGATG 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 372
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 33, 381
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 8
CviAII CATG 2 cut(s) 235, 329
CviJI RGCY 7 cut(s) 14, 26, 55, 67, 72, 252, 320
CviKI_1 RGCY 7 cut(s) 14, 26, 55, 67, 72, 252, 320
DdeI CTNAG 1 cut(s) 93
DpnI GATC 2 cut(s) 164, 246
DpnII GATC 2 cut(s) 162, 244
DraI TTTAAA 1 cut(s) 361
DraIII CACNNNGTG 1 cut(s) 392
Eam1104I CTCTTC 2 cut(s) 13, 108
EarI CTCTTC 2 cut(s) 13, 108
Eco47I GGWCC 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 143
EcoT22I ATGCAT 1 cut(s) 264
FaeI CATG 2 cut(s) 238, 332
FaiI YATR 6 cut(s) 213, 232, 236, 330, 399, 406
FaqI GGGAC 1 cut(s) 67
FatI CATG 2 cut(s) 234, 328
FauI CCCGC 1 cut(s) 92
FspBI CTAG 1 cut(s) 15
HaeIII GGCC 1 cut(s) 26
HapII CCGG 3 cut(s) 11, 32, 50
Hin1II CATG 2 cut(s) 238, 332
HinfI GANTC 1 cut(s) 299
HpaII CCGG 3 cut(s) 11, 32, 50
Hpy188III TCNNGA 1 cut(s) 50
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 97, 103, 235
HpyCH4V TGCA 5 cut(s) 131, 158, 262, 296, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 32
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 2 cut(s) 238, 332
Kpn2I TCCGGA 1 cut(s) 49
KroI GCCGGC 1 cut(s) 31
KroNI GCCGGC 1 cut(s) 33
Kzo9I GATC 2 cut(s) 162, 244
LmnI GCTCC 1 cut(s) 52
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 139, 175
MalI GATC 2 cut(s) 164, 246
MboI GATC 2 cut(s) 162, 244
MboII GAAGA 3 cut(s) 30, 125, 362
MflI RGATCY 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 7 cut(s) 45, 188, 270, 310, 332, 409, 435
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 2 cut(s) 37, 260
Mph1103I ATGCAT 1 cut(s) 264
MreI CGCCGGCG 1 cut(s) 31
MroI TCCGGA 1 cut(s) 49
MroNI GCCGGC 1 cut(s) 31
MseI TTAA 3 cut(s) 314, 360, 422
MspI CCGG 3 cut(s) 11, 32, 50
MspR9I CCNGG 1 cut(s) 145
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 11, 32
NaeI GCCGGC 1 cut(s) 33
NdeII GATC 2 cut(s) 162, 244
NgoMIV GCCGGC 1 cut(s) 31
NlaIII CATG 2 cut(s) 238, 332
NlaIV GGNNCC 4 cut(s) 9, 54, 164, 343
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 1 cut(s) 238
PaqCI CACCTGC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PctI GAATGC 1 cut(s) 381
PdiI GCCGGC 1 cut(s) 33
PflFI GACNNNGTC 1 cut(s) 429
PflMI CCANNNNNTGG 2 cut(s) 334, 392
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 4 cut(s) 9, 54, 164, 343
PspPI GGNCC 1 cut(s) 8
PsuI RGATCY 1 cut(s) 162
PsyI GACNNNGTC 1 cut(s) 429
SaqAI TTAA 3 cut(s) 314, 360, 422
Sau3AI GATC 2 cut(s) 162, 244
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 1 cut(s) 127
SetI ASST 2 cut(s) 130, 287
SfaNI GCATC 1 cut(s) 271
SgrAI CRCCGGYG 1 cut(s) 31
SinI GGWCC 1 cut(s) 8
Sse9I AATT 7 cut(s) 45, 188, 270, 310, 332, 409, 435
SsiI CCGC 2 cut(s) 5, 85
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 143
TaqI TCGA 1 cut(s) 265
TasI AATT 7 cut(s) 45, 188, 270, 310, 332, 409, 435
Tru1I TTAA 3 cut(s) 314, 360, 422
Tru9I TTAA 3 cut(s) 314, 360, 422
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 5 cut(s) 116, 345, 363, 402, 429
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 1 cut(s) 372
Tth111I GACNNNGTC 1 cut(s) 429
Van91I CCANNNNNTGG 2 cut(s) 334, 392
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 4 cut(s) 45, 188, 310, 435
XceI RCATGY 1 cut(s) 238
XspI CTAG 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.