Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020398

Physical Location & Seq

Genomic Coordinates Forward (+)

72958087 .. 72958957

Gene Structure 871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTTCCAAGTCTATATTTTCAGTAACAGTATTGCTACTATTTCTGGCTGTTGGATCCAATGCAGGTGGAATTGCTGTATATTGGGGCCAGAATGGGAATGAAGGCACATTAGCGGAAACATGTGCTTCAGGGAACTACAAATTCGTAAATATAGCTTTCCTGTCATCATTTGGTAATGGCCAAACCCCTAGCATAAACCTCGCCGGTCACTGTGACCCGTCCACCAATGAATACACCAAGTTGAGCCCCGAGATCAAGTCATGCCAGGCCAAAGGCATTAAGGTCATACTCTCCATAGGAGGAGCTGCAGGGAGCTACTCTTTGGCTTCATCCGACAATGCCCGCCAAGTTGCTACTTACTTGTGGAACAACTTCTTGGGAGGACATTCCTCTTCAAGGCCGTTGGGAGATGCTGTTTTGGATGGAGTTGACTTTGACATTGAAGGAGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0004857 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0015066 GO:0016052 GO:0016787 GO:0016798 GO:0030234 GO:0043086 GO:0043170 GO:0044092 GO:0044238 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

152

Amino Acids

15.7

Weight (kDa)

4.97

Isoelectric Point (pI)

27.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	25 - 149	1.3e-12	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020398)

Species	Orthologous Gene IDs
malus_domestica	MD07G1129800.v1.1
rosa_chinensis	RchiOBHm_Chr2g0156261
rosa_multiflora	Rmu_sc0002071.1_g000011 Rmu_sc0007072.1_g000003
rosa_samantha	Rh1AG436600 Rh4AG100600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	56
AciI	CCGC	2 cut(s)	116, 346
AclWI	GGATC	2 cut(s)	51, 64
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	399
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	399, 446
AjnI	CCWGG	1 cut(s)	267
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AluBI	AGCT	3 cut(s)	158, 308, 318
AluI	AGCT	3 cut(s)	158, 308, 318
AlwI	GGATC	2 cut(s)	51, 64
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	4 cut(s)	88, 181, 270, 401
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	183
BamHI	GGATCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	1 cut(s)	419
BceAI	ACGGC	1 cut(s)	388
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	1 cut(s)	269
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	309
BfuAI	ACCTGC	1 cut(s)	56
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	269
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	58, 89
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse118I	RCCGGY	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	269
BseGI	GGATG	2 cut(s)	332, 430
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	295
BshFI	GGCC	4 cut(s)	90, 183, 272, 403
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	399
BsnI	GGCC	4 cut(s)	90, 183, 272, 403
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	2 cut(s)	56, 255
BspACI	CCGC	2 cut(s)	116, 346
BspANI	GGCC	4 cut(s)	90, 183, 272, 403
BspLI	GGNNCC	2 cut(s)	58, 89
BspMAI	CTGCAG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	56
BspPI	GGATC	2 cut(s)	51, 64
BsrFI	RCCGGY	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	206
BssMI	GATC	2 cut(s)	56, 255
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	2 cut(s)	31, 215
Bst6I	CTCTTC	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	346
BstENI	CCTNNNNNAGG	1 cut(s)	397
BstF5I	GGATG	2 cut(s)	332, 430
BstKTI	GATC	2 cut(s)	59, 258
BstMBI	GATC	2 cut(s)	56, 255
BstNI	CCWGG	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	295
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BsuRI	GGCC	4 cut(s)	90, 183, 272, 403
BtsCI	GGATG	2 cut(s)	332, 430
BtsIMutI	CAGTG	1 cut(s)	211
BveI	ACCTGC	1 cut(s)	56
Cac8I	GCNNGC	1 cut(s)	346
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	88
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviAII	CATG	2 cut(s)	123, 264
DpnI	GATC	2 cut(s)	58, 257
DpnII	GATC	2 cut(s)	56, 255
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Eco24I	GRGCYC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	251
FaeI	CATG	2 cut(s)	126, 267
FaiI	YATR	8 cut(s)	17, 82, 124, 155, 197, 265, 290, 299
FatI	CATG	2 cut(s)	122, 263
FauI	CCCGC	1 cut(s)	353
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	2 cut(s)	319, 437
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	1 cut(s)	309
HaeIII	GGCC	4 cut(s)	90, 183, 272, 403
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	2 cut(s)	126, 267
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HpaII	CCGG	1 cut(s)	207
Hpy166II	GTNNAC	2 cut(s)	225, 433
Hpy188I	TCNGA	1 cut(s)	337
Hpy8I	GTNNAC	2 cut(s)	225, 433
HpyAV	CCTTC	2 cut(s)	98, 440
HpyCH4III	ACNGT	2 cut(s)	31, 215
HpyCH4V	TGCA	2 cut(s)	65, 311
Hsp92II	CATG	2 cut(s)	126, 267
Kzo9I	GATC	2 cut(s)	56, 255
LmnI	GCTCC	2 cut(s)	305, 315
LpnPI	CCDG	9 cut(s)	32, 51, 104, 117, 176, 220, 254, 281, 297
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	192
MaeIII	GTNAC	3 cut(s)	25, 209, 215
MalI	GATC	2 cut(s)	58, 257
MboI	GATC	2 cut(s)	56, 255
MboII	GAAGA	1 cut(s)	387
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	251
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	2 cut(s)	72, 143
MluNI	TGGCCA	1 cut(s)	183
MmeI	TCCRAC	2 cut(s)	34, 360
MnlI	CCTC	5 cut(s)	212, 296, 377, 403, 443
Mox20I	TGGCCA	1 cut(s)	183
MroXI	GAANNNNTTC	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	183
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
NdeII	GATC	2 cut(s)	56, 255
NlaIII	CATG	2 cut(s)	126, 267
NlaIV	GGNNCC	2 cut(s)	58, 89
NmuCI	GTSAC	2 cut(s)	209, 215
NspI	RCATGY	1 cut(s)	126
PaqCI	CACCTGC	1 cut(s)	56
PciI	ACATGT	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	310
PscI	ACATGT	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	58, 89
PspPI	GGNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	2 cut(s)	56, 255
Sau96I	GGNCC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	6 cut(s)	70, 160, 204, 288, 310, 320
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	1 cut(s)	309
Sse9I	AATT	2 cut(s)	72, 143
SsiI	CCGC	2 cut(s)	116, 346
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	31, 215
TasI	AATT	2 cut(s)	72, 143
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	218
TseFI	GTSAC	2 cut(s)	209, 215
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	2 cut(s)	209, 215
TspDTI	ATGAA	3 cut(s)	117, 246, 321
TspRI	CASTG	1 cut(s)	218
XagI	CCTNNNNNAGG	1 cut(s)	397
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.