Rmu_sc0002071.1_g000011

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002071.1
OG0020398
Physical Location & Seq
Forward (+)
62406 .. 69536
7131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002071.1_g000011.1.cds

Sequence Viewer

Length: 477 bp
atggcaccaaagttggggatttcactggcattcctcatttcagtaactctagcactacaaattggagccaatgccgcaggcattgcgatttactggggtcaaaatgggaatgagggtaccttggaagagacctgtgccacaggcaactatgactatgtgaacatagcttttctcccaacattcggcaatggccagactcccatgatcaacctagcaggacattgtgatccttacactaatggctgcactggtttgagctccgacattaagtcgtgccaagcaaaaggggtcaaggagagaaacctaaactttggagaaagcaccggggagtttgcaacctgtccggcggcccctcctcgtcgagcgtggctccgctccttattgacgaatggtgggtgtttccggacgggttcttggggtctcagggctcctatctttgtcttcttttcgtcgatctgggttgggtataattcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

158

Amino Acids

16.81

Weight (kDa)

7.56

Isoelectric Point (pI)

27.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020398)

Species Orthologous Gene IDs
malus_domestica MD07G1129800.v1.1
rosa_chinensis RchiOBHm_Chr2g0156261
rosa_multiflora Rmu_sc0002071.1_g000011 Rmu_sc0007072.1_g000003
rosa_samantha Rh1AG436600 Rh4AG100600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 116
AccB1I GGYRCC 2 cut(s) 4, 116
AccBSI CCGCTC 1 cut(s) 375
AccIII TCCGGA 1 cut(s) 402
AciI CCGC 3 cut(s) 75, 347, 373
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 190
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 2 cut(s) 14, 182
AhdI GACNNNNNGTC 1 cut(s) 268
AluBI AGCT 2 cut(s) 167, 258
AluI AGCT 2 cut(s) 167, 258
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 2 cut(s) 122, 425
AlwI GGATC 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 402
AoxI GGCC 2 cut(s) 190, 348
ApeKI GCWGC 1 cut(s) 243
Asp718I GGTACC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 349
AsuC2I CCSGG 1 cut(s) 325
BalI TGGCCA 1 cut(s) 192
BanI GGYRCC 2 cut(s) 4, 116
BanII GRGCYC 2 cut(s) 260, 430
BbsI GAAGAC 1 cut(s) 433
Bbv12I GWGCWC 1 cut(s) 260
BbvI GCAGC 1 cut(s) 230
BclI TGATCA 1 cut(s) 204
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 122, 425
BfaI CTAG 2 cut(s) 50, 212
BisI GCNGC 3 cut(s) 75, 244, 348
BlsI GCNGC 3 cut(s) 76, 245, 349
Bme1390I CCNGG 1 cut(s) 325
BmeRI GACNNNNNGTC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 349
BmiI GGNNCC 6 cut(s) 6, 67, 118, 351, 371, 429
BmrFI CCNGG 1 cut(s) 325
BmrI ACTGGG 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 433
BplI GAGNNNNNCTC 2 cut(s) 354, 386
BpuMI CCSGG 1 cut(s) 325
BsaI GGTCTC 2 cut(s) 122, 425
BsaJI CCNNGG 2 cut(s) 120, 324
BsaWI WCCGGW 1 cut(s) 402
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 182
Bse1I ACTGG 3 cut(s) 30, 98, 253
Bse3DI GCAATG 2 cut(s) 81, 193
BseAI TCCGGA 1 cut(s) 402
BseDI CCNNGG 2 cut(s) 120, 324
BseLI CCNNNNNNNGG 2 cut(s) 14, 182
BseMI GCAATG 2 cut(s) 81, 193
BseMII CTCAG 1 cut(s) 436
BseNI ACTGG 3 cut(s) 30, 98, 253
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 230
BsgI GTGCAG 1 cut(s) 229
BshFI GGCC 2 cut(s) 192, 350
BshNI GGYRCC 2 cut(s) 4, 116
BsiHKAI GWGCWC 1 cut(s) 260
BsiSI CCGG 3 cut(s) 324, 344, 403
BslI CCNNNNNNNGG 2 cut(s) 14, 182
BsmAI GTCTC 2 cut(s) 122, 425
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 2 cut(s) 192, 350
Bso31I GGTCTC 2 cut(s) 122, 425
Bsp1286I GDGCHC 2 cut(s) 260, 430
Bsp13I TCCGGA 1 cut(s) 402
Bsp143I GATC 3 cut(s) 204, 226, 453
BspACI CCGC 3 cut(s) 75, 347, 373
BspANI GGCC 2 cut(s) 192, 350
BspCNI CTCAG 1 cut(s) 435
BspEI TCCGGA 1 cut(s) 402
BspLI GGNNCC 6 cut(s) 6, 67, 118, 351, 371, 429
BspPI GGATC 1 cut(s) 221
BspT107I GGYRCC 2 cut(s) 4, 116
BspTNI GGTCTC 2 cut(s) 122, 425
BsrBI CCGCTC 1 cut(s) 375
BsrDI GCAATG 2 cut(s) 81, 193
BsrI ACTGG 3 cut(s) 30, 98, 253
BssECI CCNNGG 2 cut(s) 120, 324
BssMI GATC 3 cut(s) 204, 226, 453
BssT1I CCWWGG 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 2 cut(s) 422, 474
BstKTI GATC 3 cut(s) 207, 229, 456
BstMAI GTCTC 2 cut(s) 122, 425
BstMBI GATC 3 cut(s) 204, 226, 453
BstMWI GCNNNNNNNGC 2 cut(s) 74, 83
BstSCI CCNGG 1 cut(s) 323
BstV1I GCAGC 1 cut(s) 230
BstV2I GAAGAC 1 cut(s) 433
BsuRI GGCC 2 cut(s) 192, 350
BtsIMutI CAGTG 2 cut(s) 23, 246
Cac8I GCNNGC 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 117
CviAII CATG 1 cut(s) 202
CviJI RGCY 8 cut(s) 68, 167, 192, 243, 258, 350, 370, 428
CviKI_1 RGCY 8 cut(s) 68, 167, 192, 243, 258, 350, 370, 428
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 2 cut(s) 422, 474
DpnI GATC 3 cut(s) 206, 228, 455
DpnII GATC 3 cut(s) 204, 226, 453
DriI GACNNNNNGTC 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 120
Eam1105I GACNNNNNGTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 2 cut(s) 260, 430
Eco31I GGTCTC 2 cut(s) 122, 425
Eco53kI GAGCTC 1 cut(s) 258
EcoICRI GAGCTC 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 120
EcoT38I GRGCYC 2 cut(s) 260, 430
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 1 cut(s) 205
FaiI YATR 5 cut(s) 150, 156, 164, 203, 468
FatI CATG 1 cut(s) 201
FbaI TGATCA 1 cut(s) 204
Fnu4HI GCNGC 3 cut(s) 75, 244, 348
FriOI GRGCYC 2 cut(s) 260, 430
Fsp4HI GCNGC 3 cut(s) 75, 244, 348
FspBI CTAG 2 cut(s) 50, 212
GluI GCNGC 3 cut(s) 75, 244, 348
HaeIII GGCC 2 cut(s) 192, 350
HapII CCGG 3 cut(s) 324, 344, 403
Hin1II CATG 1 cut(s) 205
HinfI GANTC 1 cut(s) 196
HpaII CCGG 3 cut(s) 324, 344, 403
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 403
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 2 cut(s) 363, 454
HpyCH4V TGCA 2 cut(s) 246, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 83
HpyF3I CTNAG 2 cut(s) 422, 474
Hsp92II CATG 1 cut(s) 205
Kpn2I TCCGGA 1 cut(s) 402
KpnI GGTACC 1 cut(s) 120
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 3 cut(s) 204, 226, 453
LmnI GCTCC 5 cut(s) 65, 263, 375, 380, 433
Lsp1109I GCAGC 1 cut(s) 230
MaeI CTAG 2 cut(s) 50, 212
MaeIII GTNAC 1 cut(s) 43
MalI GATC 3 cut(s) 206, 228, 455
MbiI CCGCTC 1 cut(s) 375
MboI GATC 3 cut(s) 204, 226, 453
MboII GAAGA 2 cut(s) 137, 433
MhlI GDGCHC 2 cut(s) 260, 430
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 2 cut(s) 60, 469
MluNI TGGCCA 1 cut(s) 192
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 4 cut(s) 44, 106, 363, 366
Mox20I TGGCCA 1 cut(s) 192
MroI TCCGGA 1 cut(s) 402
MscI TGGCCA 1 cut(s) 192
MseI TTAA 1 cut(s) 267
Msp20I TGGCCA 1 cut(s) 192
MspI CCGG 3 cut(s) 324, 344, 403
MspR9I CCNGG 1 cut(s) 325
Mva1269I GAATGC 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 74, 83
NciI CCSGG 1 cut(s) 325
NdeII GATC 3 cut(s) 204, 226, 453
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 6 cut(s) 6, 67, 118, 351, 371, 429
PctI GAATGC 1 cut(s) 29
PkrI GCNGC 3 cut(s) 76, 245, 349
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 260
PspN4I GGNNCC 6 cut(s) 6, 67, 118, 351, 371, 429
PspPI GGNCC 1 cut(s) 349
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
SacI GAGCTC 1 cut(s) 260
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 3 cut(s) 75, 244, 348
Sau3AI GATC 3 cut(s) 204, 226, 453
Sau96I GGNCC 1 cut(s) 349
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 325
SduI GDGCHC 2 cut(s) 260, 430
SetI ASST 7 cut(s) 122, 134, 169, 213, 260, 306, 341
Sse9I AATT 2 cut(s) 60, 469
SsiI CCGC 3 cut(s) 75, 347, 373
SspMI CTAG 2 cut(s) 50, 212
SstI GAGCTC 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 323
StyI CCWWGG 1 cut(s) 120
TaqI TCGA 2 cut(s) 361, 452
TasI AATT 2 cut(s) 60, 469
TauI GCSGC 2 cut(s) 77, 350
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 2 cut(s) 30, 253
TseI GCWGC 1 cut(s) 243
TspRI CASTG 2 cut(s) 30, 253
XspI CTAG 2 cut(s) 50, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.