Rmu_sc0007072.1_g000003

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007072.1
OG0020398
Physical Location & Seq
Forward (+)
12788 .. 15049
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007072.1_g000003.1.cds

Sequence Viewer

Length: 369 bp
atggcaccaaagttggggatttcactggcattcctcatttcagtaactctagcactacaaattggagccaatgccgcaggcattgcgatttactggggtcaaaatgggaatgagggtaccttggaagagacctgtgccacaggcaactatgactatgtgaacatagcttttctcccaacattcggcaatgaccagactcccatgataaacctagccggacattgtgatccttccactaatggctgcaccggtttgagctccgacattaagtcgtgccaagcaaaaggggtcaagattgacgcatacggcatattaggacatatcatttctttgagacatgtgatgattaacttcaatgtattagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

122

Amino Acids

12.8

Weight (kDa)

5.35

Isoelectric Point (pI)

25.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020398)

Species Orthologous Gene IDs
malus_domestica MD07G1129800.v1.1
rosa_chinensis RchiOBHm_Chr2g0156261
rosa_multiflora Rmu_sc0002071.1_g000011 Rmu_sc0007072.1_g000003
rosa_samantha Rh1AG436600 Rh4AG100600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 116
AccB1I GGYRCC 2 cut(s) 4, 116
AciI CCGC 1 cut(s) 75
AclWI GGATC 1 cut(s) 221
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 2 cut(s) 14, 182
AflIII ACRYGT 1 cut(s) 337
AgeI ACCGGT 1 cut(s) 248
AgsI TTSAA 1 cut(s) 355
AhdI GACNNNNNGTC 1 cut(s) 268
AluBI AGCT 3 cut(s) 167, 258, 365
AluI AGCT 3 cut(s) 167, 258, 365
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 2 cut(s) 122, 328
AlwI GGATC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 243
AsiGI ACCGGT 1 cut(s) 248
Asp718I GGTACC 1 cut(s) 116
BanI GGYRCC 2 cut(s) 4, 116
BanII GRGCYC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 260
BbvI GCAGC 1 cut(s) 230
BceAI ACGGC 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 122, 328
BfaI CTAG 2 cut(s) 50, 212
BisI GCNGC 2 cut(s) 75, 244
BlsI GCNGC 2 cut(s) 76, 245
BmeRI GACNNNNNGTC 1 cut(s) 268
BmiI GGNNCC 3 cut(s) 6, 67, 118
BmrI ACTGGG 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 182
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 2 cut(s) 30, 98
Bse3DI GCAATG 2 cut(s) 81, 193
BseDI CCNNGG 1 cut(s) 120
BseLI CCNNNNNNNGG 2 cut(s) 14, 182
BseMI GCAATG 2 cut(s) 81, 193
BseNI ACTGG 2 cut(s) 30, 98
BseXI GCAGC 1 cut(s) 230
BsgI GTGCAG 1 cut(s) 229
BshNI GGYRCC 2 cut(s) 4, 116
BshTI ACCGGT 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 260
BsiSI CCGG 2 cut(s) 216, 249
BslI CCNNNNNNNGG 2 cut(s) 14, 182
BsmAI GTCTC 2 cut(s) 122, 328
BsmI GAATGC 1 cut(s) 29
Bso31I GGTCTC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 1 cut(s) 75
BspLI GGNNCC 3 cut(s) 6, 67, 118
BspPI GGATC 1 cut(s) 221
BspT107I GGYRCC 2 cut(s) 4, 116
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 2 cut(s) 81, 193
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 2 cut(s) 30, 98
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 79
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 2 cut(s) 122, 328
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 2 cut(s) 74, 83
BstNSI RCATGY 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 248
CseI GACGC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 117
CspAI ACCGGT 1 cut(s) 248
CviAII CATG 2 cut(s) 202, 338
CviJI RGCY 6 cut(s) 68, 167, 215, 243, 258, 365
CviKI_1 RGCY 6 cut(s) 68, 167, 215, 243, 258, 365
CviQI GTAC 1 cut(s) 117
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
DriI GACNNNNNGTC 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 120
Eam1105I GACNNNNNGTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 258
EcoICRI GAGCTC 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 2 cut(s) 205, 341
FaiI YATR 8 cut(s) 150, 156, 164, 203, 304, 311, 321, 339
FatI CATG 2 cut(s) 201, 337
Fnu4HI GCNGC 2 cut(s) 75, 244
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 2 cut(s) 75, 244
FspBI CTAG 2 cut(s) 50, 212
GluI GCNGC 2 cut(s) 75, 244
HapII CCGG 2 cut(s) 216, 249
HgaI GACGC 1 cut(s) 308
Hin1II CATG 2 cut(s) 205, 341
HinfI GANTC 1 cut(s) 196
HpaII CCGG 2 cut(s) 216, 249
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 292
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 240
HpyCH4V TGCA 1 cut(s) 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 83
Hsp92II CATG 2 cut(s) 205, 341
KpnI GGTACC 1 cut(s) 120
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 65, 263
LpnPI CCDG 8 cut(s) 11, 63, 79, 126, 145, 206, 229, 262
Lsp1109I GCAGC 1 cut(s) 230
MaeI CTAG 2 cut(s) 50, 212
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 1 cut(s) 137
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 1 cut(s) 60
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 2 cut(s) 44, 106
MseI TTAA 2 cut(s) 267, 348
MspI CCGG 2 cut(s) 216, 249
Mva1269I GAATGC 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 74, 83
NdeII GATC 1 cut(s) 226
NlaIII CATG 2 cut(s) 205, 341
NlaIV GGNNCC 3 cut(s) 6, 67, 118
NspI RCATGY 1 cut(s) 341
PciI ACATGT 1 cut(s) 337
PctI GAATGC 1 cut(s) 29
PinAI ACCGGT 1 cut(s) 248
PkrI GCNGC 2 cut(s) 76, 245
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PscI ACATGT 1 cut(s) 337
Psp124BI GAGCTC 1 cut(s) 260
PspN4I GGNNCC 3 cut(s) 6, 67, 118
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
SacI GAGCTC 1 cut(s) 260
SaqAI TTAA 2 cut(s) 267, 348
SatI GCNGC 2 cut(s) 75, 244
Sau3AI GATC 1 cut(s) 226
SchI GAGTC 1 cut(s) 190
SduI GDGCHC 1 cut(s) 260
SetI ASST 6 cut(s) 122, 134, 169, 213, 260, 367
Sse9I AATT 1 cut(s) 60
SsiI CCGC 1 cut(s) 75
SspMI CTAG 2 cut(s) 50, 212
SstI GAGCTC 1 cut(s) 260
StyI CCWWGG 1 cut(s) 120
TasI AATT 1 cut(s) 60
TauI GCSGC 1 cut(s) 77
Tru1I TTAA 2 cut(s) 267, 348
Tru9I TTAA 2 cut(s) 267, 348
TscAI CASTG 1 cut(s) 30
TseI GCWGC 1 cut(s) 243
TspRI CASTG 1 cut(s) 30
XceI RCATGY 1 cut(s) 341
XspI CTAG 2 cut(s) 50, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.