RchiOBHm_Chr2g0156981

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019387
Physical Location & Seq
Reverse (-)
73490800 .. 73491363
564 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 564 bp
ATGGAGCGTGTTGGACTTCTGGCAATCTTTAGGTTCGGAACTCCAGCATGCAAAGGAATGGGGGACGGATACTTTCTTAAATCCACAAACGTTCCTGGTTCTGTGGTAGGCGTTGTTGGTAACCCAAATGGCGACTACACTTGTTGGGAAAGACCTGAAGACATGGACACTCCTCGAACGTCCTACATAATAACAAAACAAAATCCAGGCTCTGAAGTCTCGGCCGAAACTGCAGCCGCCCTTGCAGCTTCTTCCATGGTGTTTAGAGGTTCGGACAACAGGTACTCGGCTTTGCTTCTTAACCGAGCCATAGAGGTTTTCGAGTTTGCAGACAAGTATAGAGGATCTTATAACAATAGCATTCCCAATGGAGCGTGCCCGTTTTATTGCGACTACAATGGATACATGGATGAGTTGGTTTGGGGAGCTACGTGGTTGTACAAGGCAACTAAGAGACCTTACTACTGGGGCTATGTCAAACACAACATACATAATTTAGGTCGCGACGTTACTCAGTTTGGATGGGATGTAAAGAATGTTGGCATTCACGTACTCTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

187

Amino Acids

20.86

Weight (kDa)

6.81

Isoelectric Point (pI)

26.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 24 - 185 3.4e-49 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019387)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0156981
rosa_laevigata RLG00000020956
rosa_multiflora Rmu_ssc0000408.1_g000013
rosa_rugosa Rorug01G0059800 Rorug07G0215500
rosa_samantha Rh2AG523200 Rh2BG536400 Rh2DG545400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AccII CGCG 1 cut(s) 504
AciI CCGC 1 cut(s) 237
AclI AACGTT 1 cut(s) 90
AclWI GGATC 1 cut(s) 352
AcoI YGGCCR 1 cut(s) 222
AcuI CTGAAG 2 cut(s) 177, 234
AfaI GTAC 3 cut(s) 284, 440, 552
AjnI CCWGG 2 cut(s) 94, 205
AluBI AGCT 2 cut(s) 248, 428
AluI AGCT 2 cut(s) 248, 428
Alw26I GTCTC 2 cut(s) 223, 448
AlwI GGATC 1 cut(s) 352
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 2 cut(s) 233, 245
BaeGI GKGCMC 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 245, 257
BccI CCATC 1 cut(s) 516
BciT130I CCWGG 2 cut(s) 96, 207
BciVI GTATCC 2 cut(s) 62, 395
BcoDI GTCTC 2 cut(s) 223, 448
BfmI CTRYAG 1 cut(s) 231
BfuI GTATCC 2 cut(s) 62, 395
BisI GCNGC 3 cut(s) 234, 237, 246
BlsI GCNGC 3 cut(s) 235, 238, 247
Bme1390I CCNGG 2 cut(s) 96, 207
BmrFI CCNGG 2 cut(s) 96, 207
BmrI ACTGGG 1 cut(s) 475
BmuI ACTGGG 1 cut(s) 475
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 27
BsaAI YACGTR 2 cut(s) 432, 550
BsaI GGTCTC 1 cut(s) 448
BsaJI CCNNGG 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 470
BseBI CCWGG 2 cut(s) 96, 207
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 3 cut(s) 415, 527, 532
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 1 cut(s) 470
BseRI GAGGAG 1 cut(s) 162
BseSI GKGCMC 1 cut(s) 380
BseX3I CGGCCG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 245, 257
Bsh1236I CGCG 1 cut(s) 504
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 1 cut(s) 224
BsiEI CGRYCG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 223, 448
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 2 cut(s) 360, 543
BsnI GGCC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 448
Bsp1286I GDGCHC 1 cut(s) 380
Bsp1407I TGTACA 1 cut(s) 438
Bsp143I GATC 1 cut(s) 344
Bsp19I CCATGG 1 cut(s) 255
Bsp68I TCGCGA 1 cut(s) 504
BspACI CCGC 1 cut(s) 237
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 526
BspFNI CGCG 1 cut(s) 504
BspMAI CTGCAG 1 cut(s) 235
BspPI GGATC 1 cut(s) 352
BspTNI GGTCTC 1 cut(s) 448
BsrGI TGTACA 1 cut(s) 438
BsrI ACTGG 1 cut(s) 470
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 2 cut(s) 96, 207
BstAUI TGTACA 1 cut(s) 438
BstBAI YACGTR 2 cut(s) 432, 550
BstC8I GCNNGC 2 cut(s) 49, 376
BstDEI CTNAG 2 cut(s) 450, 513
BstDSI CCRYGG 1 cut(s) 255
BstEII GGTNACC 1 cut(s) 119
BstF5I GGATG 3 cut(s) 415, 527, 532
BstFNI CGCG 1 cut(s) 504
BstKTI GATC 1 cut(s) 347
BstMAI GTCTC 2 cut(s) 223, 448
BstMBI GATC 1 cut(s) 344
BstMCI CGRYCG 1 cut(s) 225
BstMWI GCNNNNNNNGC 3 cut(s) 230, 242, 245
BstNI CCWGG 2 cut(s) 96, 207
BstNSI RCATGY 1 cut(s) 51
BstPI GGTNACC 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 94, 205
BstSFI CTRYAG 1 cut(s) 231
BstSLI GKGCMC 1 cut(s) 380
BstUI CGCG 1 cut(s) 504
BstV1I GCAGC 2 cut(s) 245, 257
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BstZI CGGCCG 1 cut(s) 222
BsuI GTATCC 2 cut(s) 62, 395
BsuRI GGCC 1 cut(s) 224
BtgI CCRYGG 1 cut(s) 255
BtsCI GGATG 3 cut(s) 415, 527, 532
BtuMI TCGCGA 1 cut(s) 504
Cac8I GCNNGC 2 cut(s) 49, 376
CaiI CAGNNNCTG 1 cut(s) 212
Csp6I GTAC 3 cut(s) 283, 439, 551
CviAII CATG 4 cut(s) 48, 163, 256, 406
CviJI RGCY 8 cut(s) 210, 224, 236, 248, 290, 308, 428, 471
CviKI_1 RGCY 8 cut(s) 210, 224, 236, 248, 290, 308, 428, 471
CviQI GTAC 3 cut(s) 283, 439, 551
DdeI CTNAG 2 cut(s) 450, 513
DpnI GATC 1 cut(s) 346
DpnII GATC 1 cut(s) 344
EaeI YGGCCR 1 cut(s) 222
EagI CGGCCG 1 cut(s) 222
EclXI CGGCCG 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 448
Eco52I CGGCCG 1 cut(s) 222
Eco57I CTGAAG 2 cut(s) 177, 234
Eco91I GGTNACC 1 cut(s) 119
EcoO65I GGTNACC 1 cut(s) 119
EcoRII CCWGG 2 cut(s) 94, 205
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 4 cut(s) 51, 166, 259, 409
FaqI GGGAC 1 cut(s) 77
FatI CATG 4 cut(s) 47, 162, 255, 405
Fnu4HI GCNGC 3 cut(s) 234, 237, 246
FokI GGATG 3 cut(s) 422, 534, 539
Fsp4HI GCNGC 3 cut(s) 234, 237, 246
GluI GCNGC 3 cut(s) 234, 237, 246
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 224
Hin1II CATG 4 cut(s) 51, 166, 259, 409
Hpy188I TCNGA 3 cut(s) 38, 214, 274
Hpy188III TCNNGA 1 cut(s) 503
Hpy99I CGWCG 1 cut(s) 509
HpyCH4IV ACGT 5 cut(s) 90, 179, 431, 507, 549
HpyCH4V TGCA 4 cut(s) 51, 233, 245, 329
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 242, 245
HpyF3I CTNAG 2 cut(s) 450, 513
HpySE526I ACGT 5 cut(s) 90, 179, 431, 507, 549
Hsp92II CATG 4 cut(s) 51, 166, 259, 409
Kzo9I GATC 1 cut(s) 344
LmnI GCTCC 3 cut(s) 4, 371, 425
LpnPI CCDG 9 cut(s) 5, 57, 81, 108, 168, 192, 219, 265, 451
Lsp1109I GCAGC 2 cut(s) 245, 257
MaeII ACGT 5 cut(s) 90, 179, 431, 507, 549
MaeIII GTNAC 2 cut(s) 119, 508
MalI GATC 1 cut(s) 346
MboI GATC 1 cut(s) 344
MboII GAAGA 3 cut(s) 170, 243, 549
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 1 cut(s) 380
MluCI AATT 1 cut(s) 493
MnlI CCTC 4 cut(s) 183, 260, 307, 335
MseI TTAA 3 cut(s) 78, 300, 562
MspR9I CCNGG 2 cut(s) 96, 207
Mva1269I GAATGC 2 cut(s) 360, 543
MvaI CCWGG 2 cut(s) 96, 207
MvnI CGCG 1 cut(s) 504
MwoI GCNNNNNNNGC 3 cut(s) 230, 242, 245
NcoI CCATGG 1 cut(s) 255
NdeII GATC 1 cut(s) 344
NlaIII CATG 4 cut(s) 51, 166, 259, 409
NmeAIII GCCGAG 2 cut(s) 200, 266
NruI TCGCGA 1 cut(s) 504
NspI RCATGY 1 cut(s) 51
PaeI GCATGC 1 cut(s) 51
PctI GAATGC 2 cut(s) 360, 543
PkrI GCNGC 3 cut(s) 235, 238, 247
Ppu21I YACGTR 2 cut(s) 432, 550
PsiI TTATAA 1 cut(s) 351
Psp1406I AACGTT 1 cut(s) 90
Psp6I CCWGG 2 cut(s) 94, 205
PspEI GGTNACC 1 cut(s) 119
PspGI CCWGG 2 cut(s) 94, 205
PstI CTGCAG 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 1 cut(s) 344
RruI TCGCGA 1 cut(s) 504
RsaI GTAC 3 cut(s) 284, 440, 552
RsaNI GTAC 3 cut(s) 283, 439, 551
SaqAI TTAA 3 cut(s) 78, 300, 562
SatI GCNGC 3 cut(s) 234, 237, 246
Sau3AI GATC 1 cut(s) 344
ScrFI CCNGG 2 cut(s) 96, 207
SduI GDGCHC 1 cut(s) 380
SfcI CTRYAG 1 cut(s) 231
SphI GCATGC 1 cut(s) 51
Sse9I AATT 1 cut(s) 493
SsiI CCGC 1 cut(s) 237
StyD4I CCNGG 2 cut(s) 94, 205
StyI CCWWGG 1 cut(s) 255
TaiI ACGT 5 cut(s) 93, 182, 434, 510, 552
TaqI TCGA 2 cut(s) 175, 321
TasI AATT 1 cut(s) 493
TatI WGTACW 1 cut(s) 438
TauI GCSGC 1 cut(s) 239
Tru1I TTAA 3 cut(s) 78, 300, 562
Tru9I TTAA 3 cut(s) 78, 300, 562
TseI GCWGC 2 cut(s) 233, 245
TspGWI ACGGA 1 cut(s) 81
XceI RCATGY 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.