Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011521

Physical Location & Seq

Genomic Coordinates Reverse (-)

78205532 .. 78207444

Gene Structure 1913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGGGAAGTTTGTTTTTAGAATTGAAGACACTGATTTGGAGAGGTCTACTAAGGAGTCCAAGGAGGTTGTGTTGCAGGATCTCTCTTGGCTTGGTCTTGATTGGGATGAAGCAATATGCTGAGAAGCTTTTAGAGTGTGGTTATGTTTATTGCTGCTTTTGCTCTAGTGAGGAACTAGAAAAAATGAAGGAGATTGCAAAGCTGAAGCAACTGCCTCTAGTATACTCAAGAAAGTGGGCCAATGCAACTGATGTAGAAGTACAAGAAGACTGGAAAAAGGAAGTCAGTTGGAACTTGGACACTCTTGGAGATTTTGTAATTATGAGAAGCAATGGGCAACAAGTGTACAATTTTTGTGTCACAGTTGATGATGCTAGCATGGCTATCTCACATGTTATTAGAAGTAAGTTATCAAAAAGGCATGGAGCAACTTCAGTGGGCCAGTTTAGGGAGATGGGCTATCTACCACAGGCAATGGTGAACTATTTGGCACTGTTAGGTTGGGTCGATGGAACTGAAAATGAAATAATTAATCAAATGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

tRNA-synt_1c

Protein Analysis

182

Amino Acids

20.91

Weight (kDa)

7.55

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1c	PF00749	83 - 136	6.6e-07	tRNA synthetases class I (E and Q), catalytic domain
tRNA-synt_1c	PF00749	136 - 180	4.1e-07	tRNA synthetases class I (E and Q), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14910 FvH4_2g14910 FvH4_2g14910
malus_domestica	MD00G1184100.v1.1
prunus_persica	Prupe.4G159800_v2.0.a1
pyrus_communis	pycom11g23440
rosa_chinensis	RchiOBHm_Chr2g0162471 RchiOBHm_Chr5g0030101
rosa_multiflora	Rmu_sc0042269.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049890 Rroxscaffold_1G00049930
rosa_rugosa	Rorug05G0117100 Rorug05G0117800
rosa_samantha	Rh5AG210100 Rh5BG209100 Rh5CG232900 Rh5DG213400 Rh6AG219500
rosa_wichuraiana	Rw5G019150 Rw5G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	49, 225
AclWI	GGATC	1 cut(s)	89
AcuI	CTGAAG	2 cut(s)	227, 420
AfaI	GTAC	2 cut(s)	264, 350
AfiI	CCNNNNNNNGG	1 cut(s)	451
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	1 cut(s)	28
AluBI	AGCT	2 cut(s)	130, 205
AluI	AGCT	2 cut(s)	130, 205
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	2 cut(s)	240, 442
ApeKI	GCWGC	1 cut(s)	156
AseI	ATTAAT	1 cut(s)	534
AspS9I	GGNCC	2 cut(s)	240, 442
AsuHPI	GGTGA	1 cut(s)	493
AsuNHI	GCTAGC	1 cut(s)	377
BbsI	GAAGAC	2 cut(s)	35, 276
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	2 cut(s)	451, 506
BfaI	CTAG	4 cut(s)	168, 179, 221, 378
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
BmgT120I	GGNCC	2 cut(s)	240, 442
BmsI	GCATC	1 cut(s)	364
BmtI	GCTAGC	1 cut(s)	381
BpiI	GAAGAC	2 cut(s)	35, 276
BpuEI	CTTGAG	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	62
BsaXI	ACNNNNNCTCC	4 cut(s)	58, 88, 303, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse1I	ACTGG	2 cut(s)	278, 445
Bse3DI	GCAATG	2 cut(s)	340, 483
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMI	GCAATG	2 cut(s)	340, 483
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	2 cut(s)	278, 445
BseXI	GCAGC	1 cut(s)	143
BshFI	GGCC	2 cut(s)	242, 444
BslI	CCNNNNNNNGG	1 cut(s)	451
BsnI	GGCC	2 cut(s)	242, 444
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	81
BspANI	GGCC	2 cut(s)	242, 444
BspCNI	CTCAG	1 cut(s)	115
BspOI	GCTAGC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	89
BsrDI	GCAATG	2 cut(s)	340, 483
BsrGI	TGTACA	1 cut(s)	348
BsrI	ACTGG	2 cut(s)	278, 445
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	1 cut(s)	81
BssNAI	GTATAC	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	62
Bst1107I	GTATAC	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	367, 498
BstAUI	TGTACA	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	379
BstDEI	CTNAG	2 cut(s)	53, 123
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 383
BstNSI	RCATGY	1 cut(s)	398
BstV1I	GCAGC	1 cut(s)	143
BstV2I	GAAGAC	2 cut(s)	35, 276
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BstZ17I	GTATAC	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	242, 444
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	3 cut(s)	32, 444, 494
Cac8I	GCNNGC	1 cut(s)	379
Cfr13I	GGNCC	2 cut(s)	240, 442
Csp6I	GTAC	2 cut(s)	263, 349
CspCI	CAANNNNNGTGG	2 cut(s)	420, 455
CviAII	CATG	3 cut(s)	382, 395, 425
CviJI	RGCY	7 cut(s)	93, 130, 205, 242, 386, 444, 462
CviKI_1	RGCY	7 cut(s)	93, 130, 205, 242, 386, 444, 462
CviQI	GTAC	2 cut(s)	263, 349
DdeI	CTNAG	2 cut(s)	53, 123
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	62
Eco57I	CTGAAG	2 cut(s)	227, 420
EcoT14I	CCWWGG	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	3 cut(s)	385, 398, 428
FaiI	YATR	7 cut(s)	120, 147, 226, 326, 383, 396, 426
FatI	CATG	3 cut(s)	381, 394, 424
FblI	GTMKAC	2 cut(s)	49, 225
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	157
FspBI	CTAG	4 cut(s)	168, 179, 221, 378
GluI	GCNGC	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	242, 444
Hin1II	CATG	3 cut(s)	385, 398, 428
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	1 cut(s)	58
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	4 cut(s)	50, 226, 349, 484
Hpy188III	TCNNGA	2 cut(s)	100, 231
Hpy8I	GTNNAC	4 cut(s)	50, 226, 349, 484
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	2 cut(s)	367, 498
HpyCH4V	TGCA	4 cut(s)	78, 200, 248, 544
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 383
HpyF3I	CTNAG	2 cut(s)	53, 123
Hsp92II	CATG	3 cut(s)	385, 398, 428
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	428
LpnPI	CCDG	4 cut(s)	64, 259, 458, 458
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	4 cut(s)	168, 179, 221, 378
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	2 cut(s)	40, 281
MflI	RGATCY	1 cut(s)	81
MluCI	AATT	4 cut(s)	23, 321, 352, 531
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	4 cut(s)	38, 60, 166, 228
MseI	TTAA	1 cut(s)	534
MwoI	GCNNNNNNNGC	2 cut(s)	162, 383
NdeII	GATC	1 cut(s)	81
NheI	GCTAGC	1 cut(s)	377
NlaIII	CATG	3 cut(s)	385, 398, 428
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	398
PciI	ACATGT	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	158
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PscI	ACATGT	1 cut(s)	394
PshBI	ATTAAT	1 cut(s)	534
PspPI	GGNCC	2 cut(s)	240, 442
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	2 cut(s)	264, 350
RsaNI	GTAC	2 cut(s)	263, 349
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	2 cut(s)	240, 442
SchI	GAGTC	1 cut(s)	67
SetI	ASST	5 cut(s)	49, 71, 132, 207, 505
SfaNI	GCATC	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	4 cut(s)	23, 321, 352, 531
SspMI	CTAG	4 cut(s)	168, 179, 221, 378
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	2 cut(s)	367, 498
TaqI	TCGA	1 cut(s)	510
TasI	AATT	4 cut(s)	23, 321, 352, 531
TatI	WGTACW	2 cut(s)	262, 348
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	3 cut(s)	39, 444, 501
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	3 cut(s)	125, 203, 540
TspRI	CASTG	3 cut(s)	39, 444, 501
VspI	ATTAAT	1 cut(s)	534
XceI	RCATGY	1 cut(s)	398
XmiI	GTMKAC	2 cut(s)	49, 225
XspI	CTAG	4 cut(s)	168, 179, 221, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.