RchiOBHm_Chr2g0163301

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018065
Physical Location & Seq
Reverse (-)
78846961 .. 78848003
1043 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 489 bp
ATGGCCACCAAGTTCGTCCTCGTCTCGCTTCTCCTCCTTCAGCTTGCCGTAACTGCTTTCTCCGGCATCGCTCAACAGAACCCTCACCACCAACCACACGGTAAACAGAAGACCGCACATGAGCCCGGGGGTCCAGCAGGGGGAATTCCAAAGCCAGGAAGTAAACCACAGGTTCCGTTCGGAGGAGCAGATGAAGCAACTCACGATGATGGACCTGCATCCGGCAAGAAGTGGTGCATAGCCAAAACTACTATTCAGAAAAGCCTTTTGAAGAAGGACTATGATGACTTGTGCAAAGAGGTCGATTGCTCGCCTACAGACGGAAAAGGTTTATGCTATACTGAGTCCAACCACGCCAAAGCGTCCTTCGCCATGAATCTTAAATATCAAAAGAACGGTCAGAAGGATGCTGACTGCAACTACGATGGAAGAGCAGAGATTGTCACCAAAGACCCAAGCTGGGGCAAGTGTGTGCTCGTCTCTAAGTAA

Protein Analysis

162

Amino Acids

17.35

Weight (kDa)

8.68

Isoelectric Point (pI)

22.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 77 - 145 2.6e-11 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018065)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45460
rosa_chinensis RchiOBHm_Chr2g0163301
rosa_laevigata RLG00000021389
rosa_multiflora Rmu_sc0002045.1_g000007
rosa_roxburghii Rroxscaffold_2G00087400
rosa_rugosa Rorug02G0502100
rosa_samantha Rh2AG568900 Rh2BG581000 Rh2CG550600 Rh2DG590900
rosa_wichuraiana Rw2G047070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 223
AciI CCGC 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 144
AcuI CTGAAG 1 cut(s) 23
AfiI CCNNNNNNNGG 7 cut(s) 140, 155, 182, 221, 320, 460, 461
AgsI TTSAA 1 cut(s) 271
AjnI CCWGG 1 cut(s) 154
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AluBI AGCT 2 cut(s) 43, 459
AluI AGCT 2 cut(s) 43, 459
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 2 cut(s) 28, 484
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 144
ArsI GACNNNNNNTTYG 2 cut(s) 382, 414
AspS9I GGNCC 2 cut(s) 131, 212
AsuC2I CCSGG 2 cut(s) 126, 127
AsuHPI GGTGA 2 cut(s) 77, 436
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 2 cut(s) 131, 212
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 477
BccI CCATC 2 cut(s) 203, 419
BceAI ACGGC 1 cut(s) 32
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 1 cut(s) 156
BcnI CCSGG 2 cut(s) 126, 127
BcoDI GTCTC 2 cut(s) 28, 484
BfmI CTRYAG 1 cut(s) 315
BfuAI ACCTGC 1 cut(s) 223
Bme1390I CCNGG 3 cut(s) 126, 127, 156
Bme18I GGWCC 2 cut(s) 131, 212
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 131, 212
BmiI GGNNCC 2 cut(s) 132, 174
BmrFI CCNGG 3 cut(s) 126, 127, 156
BmsI GCATC 3 cut(s) 75, 227, 397
BpiI GAAGAC 1 cut(s) 116
BpuMI CCSGG 2 cut(s) 126, 127
BsaJI CCNNGG 2 cut(s) 125, 126
Bsc4I CCNNNNNNNGG 7 cut(s) 140, 155, 182, 221, 320, 460, 461
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 125, 126
BseGI GGATG 2 cut(s) 218, 412
BseLI CCNNNNNNNGG 7 cut(s) 140, 155, 182, 221, 320, 460, 461
BseMII CTCAG 1 cut(s) 333
BseRI GAGGAG 2 cut(s) 23, 198
BseYI CCCAGC 1 cut(s) 459
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 3 cut(s) 63, 126, 222
BslI CCNNNNNNNGG 7 cut(s) 140, 155, 182, 221, 320, 460, 461
BsmAI GTCTC 2 cut(s) 28, 484
BsmBI CGTCTC 2 cut(s) 28, 484
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 126, 477
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 132, 174
BspMI ACCTGC 1 cut(s) 223
BspQI GCTCTTC 1 cut(s) 424
BssECI CCNNGG 2 cut(s) 125, 126
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 101, 398
Bst6I CTCTTC 1 cut(s) 424
BstC8I GCNNGC 2 cut(s) 45, 311
BstDEI CTNAG 2 cut(s) 342, 483
BstF5I GGATG 2 cut(s) 218, 412
BstMAI GTCTC 2 cut(s) 28, 484
BstMWI GCNNNNNNNGC 3 cut(s) 53, 194, 368
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 3 cut(s) 124, 125, 154
BstSFI CTRYAG 1 cut(s) 315
BstV2I GAAGAC 1 cut(s) 116
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 52
BtsCI GGATG 2 cut(s) 218, 412
BveI ACCTGC 1 cut(s) 223
Cac8I GCNNGC 2 cut(s) 45, 311
Cfr13I GGNCC 2 cut(s) 131, 212
Cfr9I CCCGGG 1 cut(s) 125
CseI GACGC 1 cut(s) 351
CviAII CATG 2 cut(s) 119, 373
CviJI RGCY 7 cut(s) 5, 43, 124, 154, 242, 264, 459
CviKI_1 RGCY 7 cut(s) 5, 43, 124, 154, 242, 264, 459
DdeI CTNAG 2 cut(s) 342, 483
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 126
Eco47I GGWCC 2 cut(s) 131, 212
Eco57I CTGAAG 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 125
EcoRI GAATTC 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 126
Esp3I CGTCTC 2 cut(s) 28, 484
FaeI CATG 2 cut(s) 122, 376
FaiI YATR 6 cut(s) 120, 239, 282, 334, 339, 374
FatI CATG 2 cut(s) 118, 372
FokI GGATG 2 cut(s) 205, 419
FriOI GRGCYC 1 cut(s) 126
GsaI CCCAGC 1 cut(s) 463
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 63, 126, 222
HgaI GACGC 1 cut(s) 351
Hin1II CATG 2 cut(s) 122, 376
HinfI GANTC 2 cut(s) 344, 376
HpaII CCGG 3 cut(s) 63, 126, 222
HphI GGTGA 2 cut(s) 77, 436
Hpy166II GTNNAC 2 cut(s) 104, 164
Hpy188I TCNGA 3 cut(s) 182, 258, 402
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 2 cut(s) 104, 164
HpyAV CCTTC 4 cut(s) 47, 268, 376, 397
HpyCH4III ACNGT 2 cut(s) 101, 398
HpyCH4V TGCA 4 cut(s) 218, 237, 294, 417
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 194, 368
HpyF3I CTNAG 2 cut(s) 342, 483
Hsp92II CATG 2 cut(s) 122, 376
LguI GCTCTTC 1 cut(s) 424
LmnI GCTCC 1 cut(s) 185
LweI GCATC 3 cut(s) 75, 227, 397
MaeIII GTNAC 2 cut(s) 49, 442
MboII GAAGA 3 cut(s) 121, 283, 441
MhlI GDGCHC 2 cut(s) 126, 477
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 144
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 5 cut(s) 29, 44, 93, 176, 292
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 63, 126, 222
MspR9I CCNGG 3 cut(s) 126, 127, 156
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 53, 194, 368
NciI CCSGG 2 cut(s) 126, 127
NlaIII CATG 2 cut(s) 122, 376
NlaIV GGNNCC 2 cut(s) 132, 174
NmuCI GTSAC 1 cut(s) 442
PciSI GCTCTTC 1 cut(s) 424
PfeI GAWTC 1 cut(s) 376
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 154
PspFI CCCAGC 1 cut(s) 459
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 132, 174
PspPI GGNCC 2 cut(s) 131, 212
RseI CAYNNNNRTG 1 cut(s) 207
SapI GCTCTTC 1 cut(s) 424
SaqAI TTAA 1 cut(s) 381
Sau96I GGNCC 2 cut(s) 131, 212
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 3 cut(s) 126, 127, 156
SduI GDGCHC 2 cut(s) 126, 477
SetI ASST 6 cut(s) 45, 174, 217, 303, 331, 461
SfaNI GCATC 3 cut(s) 75, 227, 397
SfcI CTRYAG 1 cut(s) 315
SinI GGWCC 2 cut(s) 131, 212
SmaI CCCGGG 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 207
Sse9I AATT 1 cut(s) 144
SsiI CCGC 1 cut(s) 114
StyD4I CCNGG 3 cut(s) 124, 125, 154
TaaI ACNGT 2 cut(s) 101, 398
TaqI TCGA 1 cut(s) 303
TasI AATT 1 cut(s) 144
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TseFI GTSAC 1 cut(s) 442
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 2 cut(s) 207, 389
TspGWI ACGGA 2 cut(s) 165, 336
TspMI CCCGGG 1 cut(s) 125
VpaK11BI GGWCC 2 cut(s) 131, 212
XapI RAATTY 1 cut(s) 144
XmaI CCCGGG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.