RchiOBHm_Chr2g0168641

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017353
Physical Location & Seq
Reverse (-)
83046524 .. 83047369
846 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 846 bp
ATGGATGAGATCATTTACGAAAAAAACCAGTTCCAATTCTATCTGGAAGTTAGCTACCTTGAATGTGACGAGACAGAAGTACCTGACTCCGAAGCTTCAGTACCACTTGAGGTTGTGTTCAAGTCCCGTGTCCTTCACTACGCCTTCGATCATTCTTCAGCTACTTTTGATCCCGCTAAAGACTTTGTTAGTTGCGATTACAAGAAGACAATATGTGGATGTTGTGATCTTCGCATGTTGTCTTCGTCGACAGAGATTCTTTCTAAGTCGATGTCTGCAGCAAACCCTGATATCAAACCGGGAAGTGATTTTCACGATGAGATTGTGAATAAAATTGTCAGAGTTGTCAACCGCTACTCTGAATCCCAGTACATTGATTGGATCAAGCTATTGAAGGTGAAAGTTGAAATAACTGAACAAGTATTGGATCGCTGCGAGTGCGAGGAGTGTAGAGCTATAAGGGAATCGATTTTGATGGCAGAGAGGGAAGCAGAAAAGTTAATAGTACCCGCGAGTGAGTCATCGATCAAGAAGCTACTGAAGAGGGTTAGGGTAGTGGCCGCAGACTTGGAGGAGGGTCATGAAGGTCGTCAAAGAAAAAGAAGAAGTCGTGGCAGTAAGAGTGATAACAATGTAGTTGCAAGGCCAAGTGATAGCGATTGCTGTATTGTTTGTTCCGATGAGTTTACTGCCGGAAAGTATGCGGTTCAAATGCCATGTTTGCATTCGTTTCATAGATCGTGCATTGAGAAATGGCTGAGACGGAGTCACCATTGCCCTATTTGCCGATATGAGATGCCCGTGGCTGATGTTCAAGAAGATGTAGAGACATTGTTAAGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

281

Amino Acids

32.21

Weight (kDa)

5.41

Isoelectric Point (pI)

63.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 215 - 263 2.2e-09 RING-H2 zinc finger domain
zf-RING_2 PF13639 221 - 263 4.6e-12 Ring finger domain
zf-C3HC4_2 PF13923 222 - 262 2.8e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 222 - 260 2.5e-07 RING-type zinc-finger
zf-C3HC4 PF00097 222 - 262 2.5e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017353)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g48720
rosa_chinensis RchiOBHm_Chr2g0168641
rosa_laevigata RLG00000021793
rosa_multiflora Rmu_co8317429.1_g000001 Rmu_sc0002416.1_g000008
rosa_roxburghii Rroxscaffold_2G00082820
rosa_rugosa Rorug02G0534300 Rorug02G0545200
rosa_samantha Rh2AG605000 Rh2BG618000 Rh2CG586200 Rh2DG628600
rosa_wichuraiana Rw2G050150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 248
AccII CGCG 1 cut(s) 512
AciI CCGC 5 cut(s) 174, 352, 510, 561, 704
AclWI GGATC 3 cut(s) 164, 389, 435
AcoI YGGCCR 1 cut(s) 558
AcuI CTGAAG 3 cut(s) 81, 141, 560
AfaI GTAC 4 cut(s) 81, 102, 371, 507
AgsI TTSAA 6 cut(s) 62, 121, 394, 407, 710, 815
AluBI AGCT 7 cut(s) 54, 95, 161, 388, 455, 535, 843
AluI AGCT 7 cut(s) 54, 95, 161, 388, 455, 535, 843
Alw26I GTCTC 3 cut(s) 65, 754, 821
AlwI GGATC 3 cut(s) 164, 389, 435
AoxI GGCC 2 cut(s) 558, 644
ApeKI GCWGC 3 cut(s) 278, 432, 840
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 2 cut(s) 409, 761
BaeI ACNNNNGTAYC 2 cut(s) 63, 96
BarI GAAGNNNNNNTAC 2 cut(s) 84, 116
BbsI GAAGAC 2 cut(s) 212, 234
BbvI GCAGC 2 cut(s) 290, 419
BccI CCATC 1 cut(s) 469
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 3 cut(s) 65, 754, 821
BfaI CTAG 1 cut(s) 844
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 4 cut(s) 279, 433, 561, 841
BlsI GCNGC 4 cut(s) 280, 434, 562, 842
Bme1390I CCNGG 1 cut(s) 300
BmrFI CCNGG 1 cut(s) 300
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 1 cut(s) 786
BmuI ACTGGG 1 cut(s) 361
BpiI GAAGAC 2 cut(s) 212, 234
BpuEI CTTGAG 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 300
Bsa29I ATCGAT 2 cut(s) 467, 524
BsaJI CCNNGG 1 cut(s) 801
Bse1I ACTGG 2 cut(s) 28, 367
Bse3DI GCAATG 1 cut(s) 772
BseCI ATCGAT 2 cut(s) 467, 524
BseDI CCNNGG 1 cut(s) 801
BseGI GGATG 2 cut(s) 10, 224
BseMI GCAATG 1 cut(s) 772
BseMII CTCAG 1 cut(s) 749
BseNI ACTGG 2 cut(s) 28, 367
BseRI GAGGAG 2 cut(s) 458, 587
BseXI GCAGC 2 cut(s) 290, 419
Bsh1236I CGCG 1 cut(s) 512
BshFI GGCC 2 cut(s) 560, 646
BshVI ATCGAT 2 cut(s) 467, 524
BsiSI CCGG 2 cut(s) 299, 693
BslFI GGGAC 1 cut(s) 109
BsmAI GTCTC 3 cut(s) 65, 754, 821
BsmBI CGTCTC 1 cut(s) 754
BsmFI GGGAC 1 cut(s) 109
BsmI GAATGC 1 cut(s) 724
BsnI GGCC 2 cut(s) 560, 646
Bsp143I GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 737
BspACI CCGC 5 cut(s) 174, 352, 510, 561, 704
BspANI GGCC 2 cut(s) 560, 646
BspCNI CTCAG 1 cut(s) 750
BspDI ATCGAT 2 cut(s) 467, 524
BspFNI CGCG 1 cut(s) 512
BspHI TCATGA 1 cut(s) 580
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 3 cut(s) 164, 389, 435
BsrDI GCAATG 1 cut(s) 772
BsrI ACTGG 2 cut(s) 28, 367
BssECI CCNNGG 1 cut(s) 801
BssMI GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 737
Bst6I CTCTTC 1 cut(s) 536
BstDEI CTNAG 2 cut(s) 264, 758
BstDSI CCRYGG 1 cut(s) 801
BstF5I GGATG 2 cut(s) 10, 224
BstFNI CGCG 1 cut(s) 512
BstKTI GATC 8 cut(s) 12, 151, 172, 229, 384, 430, 528, 740
BstMAI GTCTC 3 cut(s) 65, 754, 821
BstMBI GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 737
BstMWI GCNNNNNNNGC 3 cut(s) 438, 721, 783
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 1 cut(s) 276
BstUI CGCG 1 cut(s) 512
BstV1I GCAGC 2 cut(s) 290, 419
BstV2I GAAGAC 2 cut(s) 212, 234
Bsu15I ATCGAT 2 cut(s) 467, 524
BsuRI GGCC 2 cut(s) 560, 646
BsuTUI ATCGAT 2 cut(s) 467, 524
BtgI CCRYGG 1 cut(s) 801
BtsCI GGATG 2 cut(s) 10, 224
CciI TCATGA 1 cut(s) 580
ClaI ATCGAT 2 cut(s) 467, 524
Csp6I GTAC 4 cut(s) 80, 101, 370, 506
CviAII CATG 3 cut(s) 235, 581, 717
CviQI GTAC 4 cut(s) 80, 101, 370, 506
DdeI CTNAG 2 cut(s) 264, 758
DpnI GATC 8 cut(s) 11, 150, 171, 228, 383, 429, 527, 739
DpnII GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 737
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco32I GATATC 1 cut(s) 292
Eco57I CTGAAG 3 cut(s) 81, 141, 560
EcoRV GATATC 1 cut(s) 292
Esp3I CGTCTC 1 cut(s) 754
FaeI CATG 3 cut(s) 238, 584, 720
FaiI YATR 8 cut(s) 214, 236, 458, 582, 702, 718, 735, 792
FaqI GGGAC 1 cut(s) 109
FatI CATG 3 cut(s) 234, 580, 716
FauI CCCGC 2 cut(s) 181, 517
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 4 cut(s) 279, 433, 561, 841
FokI GGATG 2 cut(s) 17, 231
Fsp4HI GCNGC 4 cut(s) 279, 433, 561, 841
FspBI CTAG 1 cut(s) 844
GluI GCNGC 4 cut(s) 279, 433, 561, 841
HaeIII GGCC 2 cut(s) 560, 646
HapII CCGG 2 cut(s) 299, 693
Hin1II CATG 3 cut(s) 238, 584, 720
HincII GTYRAC 2 cut(s) 249, 349
HindII GTYRAC 2 cut(s) 249, 349
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 6 cut(s) 86, 256, 362, 464, 518, 766
HpaII CCGG 2 cut(s) 299, 693
HphI GGTGA 2 cut(s) 409, 761
Hpy166II GTNNAC 3 cut(s) 249, 349, 687
Hpy188I TCNGA 4 cut(s) 91, 341, 361, 679
Hpy188III TCNNGA 5 cut(s) 44, 314, 529, 581, 815
Hpy8I GTNNAC 3 cut(s) 249, 349, 687
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 4 cut(s) 143, 154, 388, 578
HpyCH4V TGCA 4 cut(s) 278, 641, 724, 744
HpyF10VI GCNNNNNNNGC 3 cut(s) 438, 721, 783
HpyF3I CTNAG 2 cut(s) 264, 758
Hsp92II CATG 3 cut(s) 238, 584, 720
Kzo9I GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 737
LpnPI CCDG 7 cut(s) 29, 41, 96, 300, 312, 380, 706
Lsp1109I GCAGC 2 cut(s) 290, 419
LweI GCATC 1 cut(s) 786
MaeI CTAG 1 cut(s) 844
MaeIII GTNAC 2 cut(s) 65, 767
MalI GATC 8 cut(s) 11, 150, 171, 228, 383, 429, 527, 739
MboI GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 737
MboII GAAGA 7 cut(s) 147, 217, 221, 234, 553, 615, 830
MluCI AATT 2 cut(s) 35, 333
MlyI GAGTC 3 cut(s) 80, 527, 775
MnlI CCTC 6 cut(s) 103, 436, 477, 537, 565, 568
MseI TTAA 2 cut(s) 500, 836
MspI CCGG 2 cut(s) 299, 693
MspR9I CCNGG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 724
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 3 cut(s) 438, 721, 783
NciI CCSGG 1 cut(s) 300
NdeII GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 737
NlaIII CATG 3 cut(s) 238, 584, 720
NmuCI GTSAC 2 cut(s) 65, 767
NspI RCATGY 1 cut(s) 238
PagI TCATGA 1 cut(s) 580
PctI GAATGC 1 cut(s) 724
PfeI GAWTC 3 cut(s) 256, 362, 464
PflFI GACNNNGTC 1 cut(s) 765
PkrI GCNGC 4 cut(s) 280, 434, 562, 842
PleI GAGTC 3 cut(s) 80, 526, 774
PpsI GAGTC 3 cut(s) 80, 526, 774
PsrI GAACNNNNNNTAC 2 cut(s) 658, 690
PstI CTGCAG 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 765
RsaI GTAC 4 cut(s) 81, 102, 371, 507
RsaNI GTAC 4 cut(s) 80, 101, 370, 506
SalI GTCGAC 1 cut(s) 247
SaqAI TTAA 2 cut(s) 500, 836
SatI GCNGC 4 cut(s) 279, 433, 561, 841
Sau3AI GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 737
SchI GAGTC 3 cut(s) 80, 527, 775
ScrFI CCNGG 1 cut(s) 300
SfaNI GCATC 1 cut(s) 786
SfcI CTRYAG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 2 cut(s) 35, 333
SsiI CCGC 5 cut(s) 174, 352, 510, 561, 704
SspMI CTAG 1 cut(s) 844
StyD4I CCNGG 1 cut(s) 298
TaqI TCGA 5 cut(s) 147, 248, 269, 467, 524
TasI AATT 2 cut(s) 35, 333
TatI WGTACW 1 cut(s) 369
TauI GCSGC 1 cut(s) 563
TfiI GAWTC 3 cut(s) 256, 362, 464
Tru1I TTAA 2 cut(s) 500, 836
Tru9I TTAA 2 cut(s) 500, 836
TseFI GTSAC 2 cut(s) 65, 767
TseI GCWGC 3 cut(s) 278, 432, 840
Tsp45I GTSAC 2 cut(s) 65, 767
TspDTI ATGAA 2 cut(s) 597, 722
TspGWI ACGGA 1 cut(s) 778
Tth111I GACNNNGTC 1 cut(s) 765
XceI RCATGY 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 248
XspI CTAG 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.