RchiOBHm_Chr2g0175791

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019561
Physical Location & Seq
Forward (+)
87810263 .. 87811940
1678 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 633 bp
ATGTCGGATTGGGGGCCAGTTTTCATAGCAGTGGTGCTGTTCATTCTGTTAACTCCAGGGCTGCTGATTCAGATACCTGGGAAAAGCCGGTTCGTCGAGTTTGGCAATTTTCAGACTAGTGGAGTATCAATTCTGAAAAGCCGGTTCGAACCCTGCTGTCGACGTTTATCTTTTTGTCTTCAATTTTATATTTTACTTTTTCAGAACCAAATCTCTTCTACTTTTTCAGAACCAAGTATTGAGCTTTCTATTTCAATGAAAGCTGTGGAAGACTTATCTGTACTGTGGTTTCTTGGGCTTTTATGCTTAGTTAGAACTCTTGGAAGACTTATTTGTACTGTGGTTTGTTTGGGCTTTTTATGCTTGGTCGAGCACTTGAGCTCTCAATCAATTGAAGCTGCAGGAAGGCGAGGATTGGAGATGTCGGATTGGGGGCCAGTTTTCATAGCAGTGGTGCTGTTCATTCTGTTAACTCCAGGGCTGCTGATTCAGATACCTGGGAAAAGCCGGTTCGTCGAGTTTGGCAATTTTCAGACTAGTGGAGTATCAATTCTGGTTCATTCCATCATCTACTTTACTCTCATCTGTATCTTCTTGTTGGCTATTGGAGTCCACATGTATGTTGGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

210

Amino Acids

23.31

Weight (kDa)

7.56

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 45 2.1e-22 Protein of unknown function (DUF3339)
DUF3339 PF11820 141 - 207 1.3e-34 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019561)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27030
prunus_persica Prupe.3G307400_v2.0.a1
pyrus_communis pycom111g00770
rosa_chinensis RchiOBHm_Chr2g0175791
rosa_roxburghii Rroxscaffold_2G00077020
rosa_rugosa Rorug02G0587700
rosa_wichuraiana Rw2G054670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 160
AfaI GTAC 2 cut(s) 282, 337
AflIII ACRYGT 1 cut(s) 615
AgsI TTSAA 3 cut(s) 182, 255, 395
AhlI ACTAGT 2 cut(s) 116, 536
AjnI CCWGG 4 cut(s) 55, 76, 475, 496
AluBI AGCT 4 cut(s) 244, 263, 381, 398
AluI AGCT 4 cut(s) 244, 263, 381, 398
Alw21I GWGCWC 2 cut(s) 375, 383
AoxI GGCC 2 cut(s) 14, 434
ApeKI GCWGC 3 cut(s) 61, 398, 481
AspS9I GGNCC 2 cut(s) 14, 434
AsuII TTCGAA 1 cut(s) 147
BanII GRGCYC 1 cut(s) 383
BbsI GAAGAC 3 cut(s) 170, 276, 331
Bbv12I GWGCWC 2 cut(s) 375, 383
BbvI GCAGC 3 cut(s) 48, 385, 468
BccI CCATC 1 cut(s) 572
BciT130I CCWGG 4 cut(s) 57, 78, 477, 498
BcuI ACTAGT 2 cut(s) 116, 536
BfaI CTAG 2 cut(s) 117, 537
BfmI CTRYAG 1 cut(s) 399
BisI GCNGC 3 cut(s) 62, 399, 482
BlsI GCNGC 3 cut(s) 63, 400, 483
Bme1390I CCNGG 4 cut(s) 57, 78, 477, 498
BmgT120I GGNCC 2 cut(s) 14, 434
BmiI GGNNCC 2 cut(s) 15, 435
BmrFI CCNGG 4 cut(s) 57, 78, 477, 498
BpiI GAAGAC 3 cut(s) 170, 276, 331
BpmI CTGGAG 2 cut(s) 39, 459
Bpu14I TTCGAA 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 397
BsaJI CCNNGG 4 cut(s) 56, 77, 476, 497
Bse118I RCCGGY 3 cut(s) 87, 141, 507
Bse1I ACTGG 2 cut(s) 17, 437
BseBI CCWGG 4 cut(s) 57, 78, 477, 498
BseDI CCNNGG 4 cut(s) 56, 77, 476, 497
BseNI ACTGG 2 cut(s) 17, 437
BseXI GCAGC 3 cut(s) 48, 385, 468
BshFI GGCC 2 cut(s) 16, 436
BsiHKAI GWGCWC 2 cut(s) 375, 383
BsiSI CCGG 3 cut(s) 88, 142, 508
BsnI GGCC 2 cut(s) 16, 436
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 375, 383
BspANI GGCC 2 cut(s) 16, 436
BspLI GGNNCC 2 cut(s) 15, 435
BspMAI CTGCAG 1 cut(s) 403
BspT104I TTCGAA 1 cut(s) 147
BsrFI RCCGGY 3 cut(s) 87, 141, 507
BsrI ACTGG 2 cut(s) 17, 437
BssAI RCCGGY 3 cut(s) 87, 141, 507
BssECI CCNNGG 4 cut(s) 56, 77, 476, 497
Bst2UI CCWGG 4 cut(s) 57, 78, 477, 498
Bst4CI ACNGT 2 cut(s) 285, 340
Bst6I CTCTTC 1 cut(s) 220
BstBI TTCGAA 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 307
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstNI CCWGG 4 cut(s) 57, 78, 477, 498
BstNSI RCATGY 1 cut(s) 619
BstSCI CCNGG 4 cut(s) 55, 76, 475, 496
BstSFI CTRYAG 1 cut(s) 399
BstV1I GCAGC 3 cut(s) 48, 385, 468
BstV2I GAAGAC 3 cut(s) 170, 276, 331
BsuRI GGCC 2 cut(s) 16, 436
BtsI GCAGTG 2 cut(s) 36, 456
BtsIMutI CAGTG 2 cut(s) 36, 456
Cfr10I RCCGGY 3 cut(s) 87, 141, 507
Cfr13I GGNCC 2 cut(s) 14, 434
Csp6I GTAC 2 cut(s) 281, 336
CviAII CATG 1 cut(s) 616
CviQI GTAC 2 cut(s) 281, 336
DdeI CTNAG 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
Ecl136II GAGCTC 1 cut(s) 381
Eco24I GRGCYC 1 cut(s) 383
Eco53kI GAGCTC 1 cut(s) 381
EcoICRI GAGCTC 1 cut(s) 381
EcoRII CCWGG 4 cut(s) 55, 76, 475, 496
EcoT38I GRGCYC 1 cut(s) 383
FaeI CATG 1 cut(s) 619
FaiI YATR 7 cut(s) 26, 189, 304, 361, 446, 617, 621
FatI CATG 1 cut(s) 615
FblI GTMKAC 1 cut(s) 160
Fnu4HI GCNGC 3 cut(s) 62, 399, 482
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 3 cut(s) 62, 399, 482
FspBI CTAG 2 cut(s) 117, 537
GluI GCNGC 3 cut(s) 62, 399, 482
GsuI CTGGAG 2 cut(s) 39, 459
HaeIII GGCC 2 cut(s) 16, 436
HapII CCGG 3 cut(s) 88, 142, 508
Hin1II CATG 1 cut(s) 619
HincII GTYRAC 3 cut(s) 51, 161, 471
HindII GTYRAC 3 cut(s) 51, 161, 471
HinfI GANTC 3 cut(s) 67, 487, 609
HpaI GTTAAC 2 cut(s) 51, 471
HpaII CCGG 3 cut(s) 88, 142, 508
Hpy166II GTNNAC 4 cut(s) 51, 161, 471, 613
Hpy188I TCNGA 9 cut(s) 7, 72, 114, 135, 204, 229, 427, 492, 534
Hpy8I GTNNAC 4 cut(s) 51, 161, 471, 613
Hpy99I CGWCG 3 cut(s) 98, 165, 518
HpyAV CCTTC 1 cut(s) 399
HpyCH4III ACNGT 2 cut(s) 285, 340
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
HpyF3I CTNAG 1 cut(s) 307
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 1 cut(s) 619
KspAI GTTAAC 2 cut(s) 51, 471
Lsp1109I GCAGC 3 cut(s) 48, 385, 468
MaeI CTAG 2 cut(s) 117, 537
MaeII ACGT 1 cut(s) 163
MboII GAAGA 5 cut(s) 170, 207, 281, 336, 583
MfeI CAATTG 1 cut(s) 390
MhlI GDGCHC 2 cut(s) 375, 383
MluCI AATT 6 cut(s) 106, 129, 182, 390, 526, 549
MlyI GAGTC 1 cut(s) 618
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 1 cut(s) 404
MseI TTAA 3 cut(s) 50, 470, 631
MslI CAYNNNNRTG 3 cut(s) 29, 449, 618
MspI CCGG 3 cut(s) 88, 142, 508
MspR9I CCNGG 4 cut(s) 57, 78, 477, 498
MunI CAATTG 1 cut(s) 390
MvaI CCWGG 4 cut(s) 57, 78, 477, 498
MwoI GCNNNNNNNGC 1 cut(s) 360
NlaIII CATG 1 cut(s) 619
NlaIV GGNNCC 2 cut(s) 15, 435
NspI RCATGY 1 cut(s) 619
NspV TTCGAA 1 cut(s) 147
PciI ACATGT 1 cut(s) 615
PfeI GAWTC 2 cut(s) 67, 487
PkrI GCNGC 3 cut(s) 63, 400, 483
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
PscI ACATGT 1 cut(s) 615
Psp124BI GAGCTC 1 cut(s) 383
Psp6I CCWGG 4 cut(s) 55, 76, 475, 496
PspGI CCWGG 4 cut(s) 55, 76, 475, 496
PspN4I GGNNCC 2 cut(s) 15, 435
PspPI GGNCC 2 cut(s) 14, 434
PstI CTGCAG 1 cut(s) 403
RsaI GTAC 2 cut(s) 282, 337
RsaNI GTAC 2 cut(s) 281, 336
RseI CAYNNNNRTG 3 cut(s) 29, 449, 618
SacI GAGCTC 1 cut(s) 383
SalI GTCGAC 1 cut(s) 159
SaqAI TTAA 3 cut(s) 50, 470, 631
SatI GCNGC 3 cut(s) 62, 399, 482
Sau96I GGNCC 2 cut(s) 14, 434
SchI GAGTC 1 cut(s) 618
ScrFI CCNGG 4 cut(s) 57, 78, 477, 498
SduI GDGCHC 2 cut(s) 375, 383
SetI ASST 7 cut(s) 79, 166, 246, 265, 383, 400, 499
SfcI CTRYAG 1 cut(s) 399
SfuI TTCGAA 1 cut(s) 147
SmiMI CAYNNNNRTG 3 cut(s) 29, 449, 618
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
SpeI ACTAGT 2 cut(s) 116, 536
Sse9I AATT 6 cut(s) 106, 129, 182, 390, 526, 549
SspMI CTAG 2 cut(s) 117, 537
SstI GAGCTC 1 cut(s) 383
StyD4I CCNGG 4 cut(s) 55, 76, 475, 496
TaaI ACNGT 2 cut(s) 285, 340
TaiI ACGT 1 cut(s) 166
TaqI TCGA 5 cut(s) 96, 147, 160, 369, 516
TasI AATT 6 cut(s) 106, 129, 182, 390, 526, 549
TatI WGTACW 2 cut(s) 280, 335
TfiI GAWTC 2 cut(s) 67, 487
Tru1I TTAA 3 cut(s) 50, 470, 631
Tru9I TTAA 3 cut(s) 50, 470, 631
TscAI CASTG 2 cut(s) 36, 456
TseI GCWGC 3 cut(s) 61, 398, 481
TspDTI ATGAA 6 cut(s) 13, 31, 272, 433, 451, 548
TspRI CASTG 2 cut(s) 36, 456
XceI RCATGY 1 cut(s) 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XmiI GTMKAC 1 cut(s) 160
XspI CTAG 2 cut(s) 117, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.