RchiOBHm_Chr1g0330701

Belongs to the ClpA ClpB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0019839
Physical Location & Seq
Forward (+)
20508429 .. 20509172
744 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 417 bp
ATGTTCATTGATGAGATTCATACTGTTGTAGGAGCAGGTGGGCTACAGATTGATGCTGGGAACTTGTTGAAACCAATGCTTGGGTGGGGTGAACTACGATGTATAGGAGCAACCACGTTGAATGAGCATAGAAAATACGTTGAGAAGGATCCTGCACTGGAGCGTGGATTTCAGCAGGTTTTTTGTGGTTATCCATTCTCCGTGGCCATTGATCTTGTTGATGAAGCGGCTGCAAAGCTGAAAATGGAGATCACATCCAAGCCGACTGAGTTAGATGAGGTAGACAGAGCCGTACTGAAGTTGGAGATGGAGAAGCTATCTTTGCAAAATGACACAGATAAATTATGGAAAGAAAGGTTAAGCAAGATGGAAAGTGACCTCGCATTGCTCAAACAGAAACAAACAGTGGGATCGTGA

Protein Analysis

138

Amino Acids

15.45

Weight (kDa)

5.1

Isoelectric Point (pI)

21.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_lid_9 PF17871 69 - 123 2e-08 AAA lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019839)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330701
rosa_samantha Rh1AG109000 Rh1AG110300 Rh1AG111200 Rh1BG044400 Rh1CG105900 Rh1DG114700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 26
Acc36I ACCTGC 2 cut(s) 26, 166
AccB7I CCANNNNNTGG 1 cut(s) 80
AccI GTMKAC 1 cut(s) 282
AciI CCGC 1 cut(s) 227
AclWI GGATC 2 cut(s) 143, 156
AcoI YGGCCR 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 2 cut(s) 70, 121
AluBI AGCT 2 cut(s) 238, 316
AluI AGCT 2 cut(s) 238, 316
AlwI GGATC 2 cut(s) 143, 156
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 101
BalI TGGCCA 1 cut(s) 206
BamHI GGATCC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 217
BccI CCATC 2 cut(s) 301, 361
BceAI ACGGC 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 44
BfuAI ACCTGC 2 cut(s) 26, 166
BisI GCNGC 2 cut(s) 228, 231
BlsI GCNGC 2 cut(s) 229, 232
BmiI GGNNCC 1 cut(s) 150
BmsI GCATC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMI GCAATG 1 cut(s) 383
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 217
BseYI CCCAGC 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 138
BshFI GGCC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 80
BsnI GGCC 1 cut(s) 206
Bsp143I GATC 4 cut(s) 148, 211, 249, 410
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 150
BspMI ACCTGC 2 cut(s) 26, 166
BspPI GGATC 2 cut(s) 143, 156
BsrDI GCAATG 1 cut(s) 383
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 4 cut(s) 148, 211, 249, 410
Bst4CI ACNGT 2 cut(s) 25, 406
BstDEI CTNAG 1 cut(s) 267
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 254
BstKTI GATC 4 cut(s) 151, 214, 252, 413
BstMBI GATC 4 cut(s) 148, 211, 249, 410
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BsuRI GGCC 1 cut(s) 206
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 1 cut(s) 254
BtsIMutI CAGTG 2 cut(s) 155, 411
BveI ACCTGC 2 cut(s) 26, 166
Csp6I GTAC 1 cut(s) 293
CviJI RGCY 7 cut(s) 43, 206, 230, 238, 262, 290, 316
CviKI_1 RGCY 7 cut(s) 43, 206, 230, 238, 262, 290, 316
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 267
DpnI GATC 4 cut(s) 150, 213, 251, 412
DpnII GATC 4 cut(s) 148, 211, 249, 410
EaeI YGGCCR 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 317
FaiI YATR 4 cut(s) 21, 104, 129, 346
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 228, 231
FokI GGATG 1 cut(s) 241
Fsp4HI GCNGC 2 cut(s) 228, 231
GluI GCNGC 2 cut(s) 228, 231
GsaI CCCAGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 1 cut(s) 206
HinfI GANTC 1 cut(s) 16
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 2 cut(s) 92, 283
Hpy188III TCNNGA 1 cut(s) 414
Hpy8I GTNNAC 2 cut(s) 92, 283
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 2 cut(s) 25, 406
HpyCH4IV ACGT 2 cut(s) 116, 138
HpyCH4V TGCA 3 cut(s) 155, 233, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 2 cut(s) 116, 138
Kzo9I GATC 4 cut(s) 148, 211, 249, 410
LmnI GCTCC 3 cut(s) 32, 107, 160
LpnPI CCDG 5 cut(s) 21, 42, 143, 161, 165
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 1 cut(s) 43
MaeII ACGT 2 cut(s) 116, 138
MaeIII GTNAC 1 cut(s) 374
MalI GATC 4 cut(s) 150, 213, 251, 412
MboI GATC 4 cut(s) 148, 211, 249, 410
MflI RGATCY 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 206
MluCI AATT 1 cut(s) 341
MluNI TGGCCA 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 2 cut(s) 271, 389
Mox20I TGGCCA 1 cut(s) 206
MscI TGGCCA 1 cut(s) 206
MseI TTAA 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 322
NdeII GATC 4 cut(s) 148, 211, 249, 410
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 374
PaqCI CACCTGC 1 cut(s) 26
PfeI GAWTC 1 cut(s) 16
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 2 cut(s) 229, 232
PspFI CCCAGC 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 150
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 2 cut(s) 228, 231
Sau3AI GATC 4 cut(s) 148, 211, 249, 410
SetI ASST 9 cut(s) 40, 119, 141, 180, 240, 282, 318, 359, 381
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 341
SsiI CCGC 1 cut(s) 227
TaaI ACNGT 2 cut(s) 25, 406
TaiI ACGT 2 cut(s) 119, 141
TasI AATT 1 cut(s) 341
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 2 cut(s) 162, 411
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 2 cut(s) 8, 237
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 2 cut(s) 162, 411
Van91I CCANNNNNTGG 1 cut(s) 80
XcmI CCANNNNNNNNNTGG 1 cut(s) 81
XmiI GTMKAC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.