Rh1AG110300

Belongs to the ClpA ClpB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0019839
Physical Location & Seq
Forward (+)
19115206 .. 19123360
8155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG110300.1

Sequence Viewer

Length: 396 bp
ATGTCGTCTTTCACTCTTGTTGTGCCTTCCACGTCCTCCACCCTCTTCAACCCTTGCAGGTCTCCTCCCAATATTAAATCTCGAGACGACTTCGACGACGTCGCTTCCGCCGGGGAATTCAAGAATGTAAGGGCTCATGGCGGGCTCGGTGTCGCGGGTTATGATGACGGGGGGCTTGGGCTTGTTCTTGGAGCCGGGAGGGCGGCCCCTGGGCCTGTGGACGACTTCAATGGTGGCGCCGTCGCAGGGCTACAGATGGATTCTGGGAACTTGTTGAAACCAATGCTTGGGTGGGGTGAACTACGATGTATAGGAGCAACCACGTTGAATGAGTACAGAAAACAGCAGTTCTTTCTGACGGATACATTACAGAAACAAGCTGACACAGGAAAGTGA

Protein Analysis

131

Amino Acids

13.72

Weight (kDa)

5.22

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019839)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330701
rosa_samantha Rh1AG109000 Rh1AG110300 Rh1AG111200 Rh1BG044400 Rh1CG105900 Rh1DG114700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 102
Acc36I ACCTGC 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 287
AccII CGCG 1 cut(s) 155
AciI CCGC 4 cut(s) 108, 141, 155, 203
AcsI RAATTY 1 cut(s) 116
AcyI GRCGYC 2 cut(s) 99, 237
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 2 cut(s) 246, 287
AgsI TTSAA 5 cut(s) 49, 121, 229, 277, 328
AjiI CACGTC 1 cut(s) 33
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 1 cut(s) 380
AluI AGCT 1 cut(s) 380
Alw26I GTCTC 2 cut(s) 66, 78
Ama87I CYCGRG 1 cut(s) 81
AoxI GGCC 2 cut(s) 204, 212
ApoI RAATTY 1 cut(s) 116
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 2 cut(s) 205, 212
AsuC2I CCSGG 2 cut(s) 112, 196
AsuHPI GGTGA 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 81
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 2 cut(s) 136, 147
BccI CCATC 1 cut(s) 250
BceAI ACGGC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 210
BciVI GTATCC 1 cut(s) 355
BcnI CCSGG 2 cut(s) 112, 196
BcoDI GTCTC 2 cut(s) 66, 78
BfmI CTRYAG 1 cut(s) 251
BfoI RGCGCY 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 48
BfuI GTATCC 1 cut(s) 355
BglI GCCNNNNNGGC 1 cut(s) 200
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 3 cut(s) 112, 196, 210
BmeT110I CYCGRG 1 cut(s) 81
BmgBI CACGTC 1 cut(s) 33
BmgT120I GGNCC 2 cut(s) 205, 212
BmiI GGNNCC 3 cut(s) 193, 207, 238
BmrFI CCNGG 3 cut(s) 112, 196, 210
BpuMI CCSGG 2 cut(s) 112, 196
BsaHI GRCGYC 2 cut(s) 99, 237
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 3 cut(s) 111, 208, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 287
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 111, 208, 209
BseLI CCNNNNNNNGG 2 cut(s) 246, 287
BseRI GAGGAG 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 2 cut(s) 206, 214
BshNI GGYRCC 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 2 cut(s) 111, 195
BslI CCNNNNNNNGG 2 cut(s) 246, 287
BsmAI GTCTC 2 cut(s) 66, 78
BsmBI CGTCTC 1 cut(s) 78
BsnI GGCC 2 cut(s) 206, 214
Bso31I GGTCTC 1 cut(s) 66
BsoBI CYCGRG 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 136, 147
BspACI CCGC 4 cut(s) 108, 141, 155, 203
BspANI GGCC 2 cut(s) 206, 214
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 3 cut(s) 193, 207, 238
BspMI ACCTGC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 66
BssECI CCNNGG 3 cut(s) 111, 208, 209
BssNI GRCGYC 2 cut(s) 99, 237
Bst2UI CCWGG 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 2 cut(s) 99, 237
BstC8I GCNNGC 1 cut(s) 143
BstFNI CGCG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstMAI GTCTC 2 cut(s) 66, 78
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 3 cut(s) 110, 194, 208
BstSFI CTRYAG 1 cut(s) 251
BstUI CGCG 1 cut(s) 155
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 2 cut(s) 206, 214
BtrI CACGTC 1 cut(s) 33
BveI ACCTGC 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 2 cut(s) 205, 212
Csp6I GTAC 1 cut(s) 334
CviAII CATG 1 cut(s) 137
CviJI RGCY 9 cut(s) 134, 145, 175, 181, 194, 206, 214, 250, 380
CviKI_1 RGCY 9 cut(s) 134, 145, 175, 181, 194, 206, 214, 250, 380
CviQI GTAC 1 cut(s) 334
DinI GGCGCC 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EciI GGCGGA 1 cut(s) 97
Eco24I GRGCYC 2 cut(s) 136, 147
Eco31I GGTCTC 1 cut(s) 66
Eco88I CYCGRG 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 208
EcoT38I GRGCYC 2 cut(s) 136, 147
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 1 cut(s) 140
FaiI YATR 3 cut(s) 138, 162, 311
FatI CATG 1 cut(s) 136
FauI CCCGC 2 cut(s) 134, 148
Fnu4HI GCNGC 1 cut(s) 204
FriOI GRGCYC 2 cut(s) 136, 147
Fsp4HI GCNGC 1 cut(s) 204
GlaI GCGC 1 cut(s) 238
GluI GCNGC 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 2 cut(s) 206, 214
HapII CCGG 2 cut(s) 111, 195
HhaI GCGC 1 cut(s) 239
Hin1I GRCGYC 2 cut(s) 99, 237
Hin1II CATG 1 cut(s) 140
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 1 cut(s) 260
HpaII CCGG 2 cut(s) 111, 195
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 2 cut(s) 220, 299
Hpy188I TCNGA 1 cut(s) 357
Hpy188III TCNNGA 3 cut(s) 81, 83, 121
Hpy8I GTNNAC 2 cut(s) 220, 299
Hpy99I CGWCG 4 cut(s) 98, 101, 104, 245
HpyAV CCTTC 1 cut(s) 36
HpyCH4IV ACGT 3 cut(s) 32, 99, 323
HpyCH4V TGCA 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpySE526I ACGT 3 cut(s) 32, 99, 323
Hsp92I GRCGYC 2 cut(s) 99, 237
Hsp92II CATG 1 cut(s) 140
HspAI GCGC 1 cut(s) 237
KasI GGCGCC 1 cut(s) 236
LmnI GCTCC 2 cut(s) 191, 314
LpnPI CCDG 9 cut(s) 43, 124, 195, 208, 222, 228, 231, 249, 372
MaeII ACGT 3 cut(s) 32, 99, 323
MboII GAAGA 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 136, 147
MluCI AATT 1 cut(s) 116
Mly113I GGCGCC 1 cut(s) 237
MnlI CCTC 4 cut(s) 46, 53, 75, 192
MseI TTAA 1 cut(s) 75
MspI CCGG 2 cut(s) 111, 195
MspR9I CCNGG 3 cut(s) 112, 196, 210
MvaI CCWGG 1 cut(s) 210
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 200
NarI GGCGCC 1 cut(s) 237
NciI CCSGG 2 cut(s) 112, 196
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 3 cut(s) 193, 207, 238
PaeR7I CTCGAG 1 cut(s) 81
PasI CCCWGGG 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 1 cut(s) 260
PflFI GACNNNGTC 1 cut(s) 98
PflMI CCANNNNNTGG 1 cut(s) 287
PkrI GCNGC 1 cut(s) 205
PluTI GGCGCC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 3 cut(s) 193, 207, 238
PspPI GGNCC 2 cut(s) 205, 212
PsyI GACNNNGTC 1 cut(s) 98
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 1 cut(s) 204
Sau96I GGNCC 2 cut(s) 205, 212
ScrFI CCNGG 3 cut(s) 112, 196, 210
SduI GDGCHC 2 cut(s) 136, 147
SetI ASST 5 cut(s) 35, 62, 102, 326, 382
SfcI CTRYAG 1 cut(s) 251
SfoI GGCGCC 1 cut(s) 238
Sfr274I CTCGAG 1 cut(s) 81
SlaI CTCGAG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 1 cut(s) 116
SsiI CCGC 4 cut(s) 108, 141, 155, 203
SspDI GGCGCC 1 cut(s) 236
SspI AATATT 1 cut(s) 73
StyD4I CCNGG 3 cut(s) 110, 194, 208
TaiI ACGT 3 cut(s) 35, 102, 326
TaqI TCGA 2 cut(s) 82, 93
TasI AATT 1 cut(s) 116
TatI WGTACW 1 cut(s) 333
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 374
Tth111I GACNNNGTC 1 cut(s) 98
Van91I CCANNNNNTGG 1 cut(s) 287
XapI RAATTY 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XhoI CTCGAG 1 cut(s) 81
ZraI GACGTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.