Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0019839

Physical Location & Seq

Genomic Coordinates Forward (+)

19247991 .. 19249349

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG111200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGGTCCAGAAATGGCGCCATCGAGGAGATAGCGGGCTACAGATGGATGCTGGGAACTTGTTGAAACCAATGCTTGGGTGGGGTGAACTACGATGTATAGGAGCAACCACGTTGAATGAGCATAGAAAATACGTTGAGAAGGATCCTGCACTGGAGCGTGGATTTCAGCAGGTTTTTTGTGGTTATCCATTCTCCGTGGCCATTGATCTTGTTGATGAAGCGGCTGCAAAGCTGAAAATGGAGATCACATCCAAGCCGACTGAGTTAGATGAGGTAGACCGAGCCGTACTGAAGTTGGAGATGGAGAAGCTATCTTTGCAAAATGACACAGATAAATTATGGAAAGAAAGGTTAAGCAAGATGGAAAGTGACCTCGCATTGCTCAAACAGAAACAAACTGTGGGATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

137

Amino Acids

15.61

Weight (kDa)

6.74

Isoelectric Point (pI)

21.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_9	PF17871	68 - 122	2e-08	AAA lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019839)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330701
rosa_samantha	Rh1AG109000 Rh1AG110300 Rh1AG111200 Rh1BG044400 Rh1CG105900 Rh1DG114700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	163
AccB1I	GGYRCC	1 cut(s)	18
AccB7I	CCANNNNNTGG	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	2 cut(s)	36, 224
AclWI	GGATC	2 cut(s)	140, 153
AcoI	YGGCCR	1 cut(s)	201
AcuI	CTGAAG	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	19
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	67, 118
AluBI	AGCT	2 cut(s)	235, 313
AluI	AGCT	2 cut(s)	235, 313
AlwI	GGATC	2 cut(s)	140, 153
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	7
BalI	TGGCCA	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	4 cut(s)	30, 40, 298, 358
BceAI	ACGGC	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	22
BfuAI	ACCTGC	1 cut(s)	163
BisI	GCNGC	2 cut(s)	225, 228
BlsI	GCNGC	2 cut(s)	226, 229
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	20, 147
BmsI	GCATC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	2 cut(s)	55, 251
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	380
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	214
BseYI	CCCAGC	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	77
BsnI	GGCC	1 cut(s)	203
Bsp143I	GATC	4 cut(s)	145, 208, 246, 407
BspACI	CCGC	2 cut(s)	36, 224
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	20, 147
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	2 cut(s)	140, 153
BspT107I	GGYRCC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	4 cut(s)	145, 208, 246, 407
BssNI	GRCGYC	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	403
BstACI	GRCGYC	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	55, 251
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	4 cut(s)	148, 211, 249, 410
BstMBI	GATC	4 cut(s)	145, 208, 246, 407
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	55, 251
BtsIMutI	CAGTG	1 cut(s)	152
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	38
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	290
CviJI	RGCY	7 cut(s)	40, 203, 227, 235, 259, 287, 313
CviKI_1	RGCY	7 cut(s)	40, 203, 227, 235, 259, 287, 313
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	1 cut(s)	264
DinI	GGCGCC	1 cut(s)	20
DpnI	GATC	4 cut(s)	147, 210, 248, 409
DpnII	GATC	4 cut(s)	145, 208, 246, 407
EaeI	YGGCCR	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	314
EgeI	GGCGCC	1 cut(s)	20
EheI	GGCGCC	1 cut(s)	20
FaiI	YATR	3 cut(s)	101, 126, 343
FauI	CCCGC	1 cut(s)	29
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	225, 228
FokI	GGATG	2 cut(s)	62, 238
Fsp4HI	GCNGC	2 cut(s)	225, 228
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	2 cut(s)	225, 228
GsaI	CCCAGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	176
HaeII	RGCGCY	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	89, 280
Hpy188III	TCNNGA	2 cut(s)	10, 411
Hpy8I	GTNNAC	2 cut(s)	89, 280
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	2 cut(s)	113, 135
HpyCH4V	TGCA	3 cut(s)	152, 230, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	2 cut(s)	113, 135
Hsp92I	GRCGYC	1 cut(s)	19
HspAI	GCGC	1 cut(s)	19
KasI	GGCGCC	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	145, 208, 246, 407
LmnI	GCTCC	2 cut(s)	104, 157
LpnPI	CCDG	5 cut(s)	23, 39, 140, 158, 162
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	40
MaeII	ACGT	2 cut(s)	113, 135
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	4 cut(s)	147, 210, 248, 409
MboI	GATC	4 cut(s)	145, 208, 246, 407
MflI	RGATCY	1 cut(s)	145
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	1 cut(s)	338
MluNI	TGGCCA	1 cut(s)	203
Mly113I	GGCGCC	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	3 cut(s)	20, 268, 386
Mox20I	TGGCCA	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	1 cut(s)	356
Msp20I	TGGCCA	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	319
NarI	GGCGCC	1 cut(s)	19
NdeII	GATC	4 cut(s)	145, 208, 246, 407
NlaIV	GGNNCC	2 cut(s)	20, 147
NmuCI	GTSAC	1 cut(s)	371
PflMI	CCANNNNNTGG	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	226, 229
PluTI	GGCGCC	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	20, 147
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	2 cut(s)	225, 228
Sau3AI	GATC	4 cut(s)	145, 208, 246, 407
Sau96I	GGNCC	1 cut(s)	7
SetI	ASST	9 cut(s)	9, 116, 138, 177, 237, 279, 315, 356, 378
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	1 cut(s)	41
SfoI	GGCGCC	1 cut(s)	20
SinI	GGWCC	1 cut(s)	7
Sse9I	AATT	1 cut(s)	338
SsiI	CCGC	2 cut(s)	36, 224
SspDI	GGCGCC	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	2 cut(s)	116, 138
TaqI	TCGA	1 cut(s)	25
TaqII	GACCGA	1 cut(s)	297
TasI	AATT	1 cut(s)	338
TauI	GCSGC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	17, 234
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	159
Van91I	CCANNNNNTGG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	1 cut(s)	78
XmiI	GTMKAC	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.