Rh1BG044400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0019839
Physical Location & Seq
Reverse (-)
5888526 .. 5888843
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG044400.1

Sequence Viewer

Length: 318 bp
ATGGTGAAGCCGTTGGGGATCAGGCCGGTCGCCGTCGTTTGCGGAAGGAACGTGGCGGAGATCGAGAGGATGTCAAAGCGGCCGTGGAACGTTGGCGACGAATCCGATGTTCTTGCGGCAGTAGAATCTCGAGACTACTTCGACGACGTCGCTTCCGCCGGGGACTTCAAGAATGTACGGGCTCATGGCGGGCTCGGTGTCGCGGGTTATGATGACGGGAGGCTTGGGCTTGTTCTTGGAGCCGGGAGGGCGGCCCCTGGGCCTGCGGACGACTTCAATGGTGGCGCCGTCGCCGTCAGTGGGGTTGTTGGGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

10.72

Weight (kDa)

4.96

Isoelectric Point (pI)

32.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019839)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330701
rosa_samantha Rh1AG109000 Rh1AG110300 Rh1AG111200 Rh1BG044400 Rh1CG105900 Rh1DG114700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 284
AccII CGCG 1 cut(s) 203
AciI CCGC 9 cut(s) 42, 56, 79, 116, 156, 189, 203, 251, 266
AclI AACGTT 1 cut(s) 90
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 80
AcyI GRCGYC 2 cut(s) 147, 285
AfaI GTAC 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 300
AgsI TTSAA 2 cut(s) 169, 277
AjnI CCWGG 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 4 cut(s) 23, 80, 252, 260
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 253, 260
AsuC2I CCSGG 2 cut(s) 160, 244
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 129
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 2 cut(s) 184, 195
BceAI ACGGC 4 cut(s) 17, 67, 272, 278
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BciT130I CCWGG 1 cut(s) 258
BcnI CCSGG 2 cut(s) 160, 244
BcoDI GTCTC 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 288
BglI GCCNNNNNGGC 1 cut(s) 248
BisI GCNGC 3 cut(s) 80, 117, 252
BlsI GCNGC 3 cut(s) 81, 118, 253
Bme1390I CCNGG 3 cut(s) 160, 244, 258
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 253, 260
BmiI GGNNCC 3 cut(s) 241, 255, 286
BmrFI CCNGG 3 cut(s) 160, 244, 258
BpuMI CCSGG 2 cut(s) 160, 244
BsaHI GRCGYC 2 cut(s) 147, 285
BsaJI CCNNGG 4 cut(s) 83, 159, 256, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse118I RCCGGY 1 cut(s) 25
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 4 cut(s) 83, 159, 256, 257
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 300
BseX3I CGGCCG 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 203
Bsh1285I CGRYCG 2 cut(s) 30, 83
BshFI GGCC 4 cut(s) 25, 82, 254, 262
BshNI GGYRCC 1 cut(s) 284
BsiEI CGRYCG 2 cut(s) 30, 83
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 3 cut(s) 26, 159, 243
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 300
BsmAI GTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 4 cut(s) 25, 82, 254, 262
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 184, 195
Bsp143I GATC 3 cut(s) 18, 60, 312
BspACI CCGC 9 cut(s) 42, 56, 79, 116, 156, 189, 203, 251, 266
BspANI GGCC 4 cut(s) 25, 82, 254, 262
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 3 cut(s) 241, 255, 286
BspPI GGATC 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 83, 159, 256, 257
BssMI GATC 3 cut(s) 18, 60, 312
BssNI GRCGYC 2 cut(s) 147, 285
Bst2UI CCWGG 1 cut(s) 258
BstACI GRCGYC 2 cut(s) 147, 285
BstC8I GCNNGC 2 cut(s) 191, 264
BstDSI CCRYGG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 75
BstFNI CGCG 1 cut(s) 203
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 3 cut(s) 21, 63, 315
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 3 cut(s) 18, 60, 312
BstMCI CGRYCG 2 cut(s) 30, 83
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 3 cut(s) 158, 242, 256
BstUI CGCG 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BstZI CGGCCG 1 cut(s) 80
BsuRI GGCC 4 cut(s) 25, 82, 254, 262
BtgI CCRYGG 1 cut(s) 83
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 304
Cac8I GCNNGC 2 cut(s) 191, 264
CfoI GCGC 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 253, 260
Csp6I GTAC 1 cut(s) 176
CviAII CATG 1 cut(s) 185
CviQI GTAC 1 cut(s) 176
DinI GGCGCC 1 cut(s) 286
DpnI GATC 3 cut(s) 20, 62, 314
DpnII GATC 3 cut(s) 18, 60, 312
EaeI YGGCCR 1 cut(s) 80
EagI CGGCCG 1 cut(s) 80
EciI GGCGGA 2 cut(s) 71, 145
EclXI CGGCCG 1 cut(s) 80
Eco24I GRGCYC 2 cut(s) 184, 195
Eco52I CGGCCG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 256
EcoT38I GRGCYC 2 cut(s) 184, 195
EgeI GGCGCC 1 cut(s) 286
EheI GGCGCC 1 cut(s) 286
FaeI CATG 1 cut(s) 188
FaiI YATR 2 cut(s) 186, 210
FaqI GGGAC 1 cut(s) 176
FatI CATG 1 cut(s) 184
FauI CCCGC 2 cut(s) 182, 196
Fnu4HI GCNGC 3 cut(s) 80, 117, 252
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 2 cut(s) 184, 195
Fsp4HI GCNGC 3 cut(s) 80, 117, 252
GlaI GCGC 1 cut(s) 286
GluI GCNGC 3 cut(s) 80, 117, 252
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 4 cut(s) 25, 82, 254, 262
HapII CCGG 3 cut(s) 26, 159, 243
HhaI GCGC 1 cut(s) 287
Hin1I GRCGYC 2 cut(s) 147, 285
Hin1II CATG 1 cut(s) 188
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HinfI GANTC 2 cut(s) 101, 125
HpaII CCGG 3 cut(s) 26, 159, 243
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 106, 317
Hpy188III TCNNGA 4 cut(s) 64, 129, 131, 169
Hpy99I CGWCG 6 cut(s) 38, 101, 146, 149, 152, 293
HpyAV CCTTC 1 cut(s) 39
HpyCH4IV ACGT 3 cut(s) 51, 90, 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpySE526I ACGT 3 cut(s) 51, 90, 147
Hsp92I GRCGYC 2 cut(s) 147, 285
Hsp92II CATG 1 cut(s) 188
HspAI GCGC 1 cut(s) 285
KasI GGCGCC 1 cut(s) 284
Kzo9I GATC 3 cut(s) 18, 60, 312
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 7 cut(s) 7, 39, 172, 243, 256, 270, 276
MaeII ACGT 3 cut(s) 51, 90, 147
MalI GATC 3 cut(s) 20, 62, 314
MboI GATC 3 cut(s) 18, 60, 312
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 2 cut(s) 184, 195
Mly113I GGCGCC 1 cut(s) 285
MnlI CCTC 3 cut(s) 60, 213, 240
MspI CCGG 3 cut(s) 26, 159, 243
MspR9I CCNGG 3 cut(s) 160, 244, 258
MvaI CCWGG 1 cut(s) 258
MvnI CGCG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 248
NarI GGCGCC 1 cut(s) 285
NciI CCSGG 2 cut(s) 160, 244
NdeII GATC 3 cut(s) 18, 60, 312
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 3 cut(s) 241, 255, 286
PaeR7I CTCGAG 1 cut(s) 129
PasI CCCWGGG 1 cut(s) 257
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PfeI GAWTC 2 cut(s) 101, 125
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 3 cut(s) 81, 118, 253
PluTI GGCGCC 1 cut(s) 288
Psp1406I AACGTT 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 3 cut(s) 241, 255, 286
PspPI GGNCC 2 cut(s) 253, 260
PsuI RGATCY 1 cut(s) 312
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SatI GCNGC 3 cut(s) 80, 117, 252
Sau3AI GATC 3 cut(s) 18, 60, 312
Sau96I GGNCC 2 cut(s) 253, 260
ScrFI CCNGG 3 cut(s) 160, 244, 258
SduI GDGCHC 2 cut(s) 184, 195
SetI ASST 3 cut(s) 54, 93, 150
SfoI GGCGCC 1 cut(s) 286
Sfr274I CTCGAG 1 cut(s) 129
SlaI CTCGAG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SsiI CCGC 9 cut(s) 42, 56, 79, 116, 156, 189, 203, 251, 266
SspDI GGCGCC 1 cut(s) 284
StyD4I CCNGG 3 cut(s) 158, 242, 256
TaiI ACGT 3 cut(s) 54, 93, 150
TaqI TCGA 3 cut(s) 63, 130, 141
TauI GCSGC 3 cut(s) 82, 119, 254
TfiI GAWTC 2 cut(s) 101, 125
TscAI CASTG 1 cut(s) 304
TspRI CASTG 1 cut(s) 304
Tth111I GACNNNGTC 1 cut(s) 146
XhoI CTCGAG 1 cut(s) 129
ZraI GACGTC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.