Rh1CG105900

Belongs to the ClpA ClpB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0019839
Physical Location & Seq
Forward (+)
21710294 .. 21712180
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG105900.1

Sequence Viewer

Length: 744 bp
ATGAACAATCAGAGAACCAACCAGACTGAAACGCACTCTGGGTTAAGTTGTTCATTACTAAGACCATTATATTTCCAGAATTTTCACGGTTACATTGGCACAGATGGAACACCAGCTACCTTGACTAAAGAAAATGGGCTACAGATGGATGCTGGGAACTTGTTGAAACCAATGCTTGGGTGGGGTGAACTACGATGTATAGGAGCAACCACGTTGAATGAGCATAGAAAATACGTTGAGAAGGATCCTGCACTGGAGCGTGGATTTCAGCAGGTTTTTTGTGGTTATCCATTCTCCGTGGCCATTGATCTTGTTGATGAAGCGGCTGCAAAGCTGAAAATGGAGATCACATCCAAGCCGACTGAGTTAGATGAGGTAGACCGAGCCGTACTGAAGTTGGAGATGGAGAAGCTATCTTTGCAAAATGACACAGATAAATTATGGAAAGAAAGGTTAAGCAAGATGGAAAGTGACCTCGCATTGCTCAAACAGAAACAAACTATTGTGTTTGAGAAAATCTTTGGGGGGTTCCAGACCCCTTCTACTACTGTAGTAGTTCCGCCCCTGGCTGACAGGGCATATGACCTAAGTCGTGCTGCTGAGCTCAAATATGGATCTCTAATGTCCCTGCAACGCCACTTAGGAGAGGCTGAGAAAAACCTTTCTGAGTACCAAAAGTCTGGAAAATATTTTCTACGAGAAGAAGTCACTGATCTTGATATTGCTGAGATTGTAAACAAATAG

Protein Analysis

247

Amino Acids

27.9

Weight (kDa)

5.54

Isoelectric Point (pI)

25.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_lid_9 PF17871 101 - 155 6.4e-08 AAA lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019839)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330701
rosa_samantha Rh1AG109000 Rh1AG110300 Rh1AG111200 Rh1BG044400 Rh1CG105900 Rh1DG114700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 262
AccB7I CCANNNNNTGG 1 cut(s) 176
AccI GTMKAC 1 cut(s) 378
AciI CCGC 2 cut(s) 323, 560
AclWI GGATC 3 cut(s) 239, 252, 622
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 413
AfaI GTAC 2 cut(s) 390, 671
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 2 cut(s) 166, 217
AjnI CCWGG 1 cut(s) 564
AluBI AGCT 4 cut(s) 116, 334, 412, 604
AluI AGCT 4 cut(s) 116, 334, 412, 604
Alw21I GWGCWC 1 cut(s) 606
AlwI GGATC 3 cut(s) 239, 252, 622
AoxI GGCC 1 cut(s) 300
ApeKI GCWGC 2 cut(s) 326, 596
ApoI RAATTY 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 197
BalI TGGCCA 1 cut(s) 302
BamHI GGATCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 606
Bbv12I GWGCWC 1 cut(s) 606
BbvI GCAGC 2 cut(s) 313, 583
BccI CCATC 4 cut(s) 98, 139, 397, 457
BceAI ACGGC 1 cut(s) 371
BciT130I CCWGG 1 cut(s) 566
BfmI CTRYAG 2 cut(s) 140, 549
BfuAI ACCTGC 1 cut(s) 262
BisI GCNGC 3 cut(s) 324, 327, 597
BlpI GCTNAGC 1 cut(s) 600
BlsI GCNGC 3 cut(s) 325, 328, 598
Bme1390I CCNGG 1 cut(s) 566
BmiI GGNNCC 2 cut(s) 246, 530
BmrFI CCNGG 1 cut(s) 566
BmsI GCATC 1 cut(s) 139
BoxI GACNNNNGTC 1 cut(s) 588
BpmI CTGGAG 1 cut(s) 275
Bpu1102I GCTNAGC 1 cut(s) 600
BsaJI CCNNGG 2 cut(s) 297, 564
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 258
Bse3DI GCAATG 1 cut(s) 479
BseBI CCWGG 1 cut(s) 566
BseDI CCNNGG 2 cut(s) 297, 564
BseGI GGATG 2 cut(s) 154, 350
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 479
BseMII CTCAG 5 cut(s) 354, 591, 642, 657, 717
BseNI ACTGG 1 cut(s) 258
BseXI GCAGC 2 cut(s) 313, 583
BseYI CCCAGC 1 cut(s) 152
BsgI GTGCAG 1 cut(s) 234
BshFI GGCC 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 606
BslFI GGGAC 1 cut(s) 610
BslI CCNNNNNNNGG 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 610
BsnI GGCC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 606
Bsp143I GATC 5 cut(s) 244, 307, 345, 614, 712
Bsp1720I GCTNAGC 1 cut(s) 600
BspACI CCGC 2 cut(s) 323, 560
BspANI GGCC 1 cut(s) 302
BspCNI CTCAG 5 cut(s) 355, 592, 643, 658, 718
BspLI GGNNCC 2 cut(s) 246, 530
BspMI ACCTGC 1 cut(s) 262
BspPI GGATC 3 cut(s) 239, 252, 622
BsrDI GCAATG 1 cut(s) 479
BsrI ACTGG 1 cut(s) 258
BssECI CCNNGG 2 cut(s) 297, 564
BssMI GATC 5 cut(s) 244, 307, 345, 614, 712
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 2 cut(s) 89, 550
BstDEI CTNAG 8 cut(s) 59, 363, 587, 600, 640, 651, 666, 726
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 2 cut(s) 154, 350
BstKTI GATC 5 cut(s) 247, 310, 348, 617, 715
BstMBI GATC 5 cut(s) 244, 307, 345, 614, 712
BstMWI GCNNNNNNNGC 2 cut(s) 418, 575
BstNI CCWGG 1 cut(s) 566
BstPAI GACNNNNGTC 1 cut(s) 588
BstSCI CCNGG 1 cut(s) 564
BstSFI CTRYAG 2 cut(s) 140, 549
BstV1I GCAGC 2 cut(s) 313, 583
BstX2I RGATCY 2 cut(s) 244, 614
BstXI CCANNNNNNTGG 1 cut(s) 680
BstYI RGATCY 2 cut(s) 244, 614
BsuRI GGCC 1 cut(s) 302
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 2 cut(s) 154, 350
BtsIMutI CAGTG 2 cut(s) 251, 708
BveI ACCTGC 1 cut(s) 262
Csp6I GTAC 2 cut(s) 389, 670
CviQI GTAC 2 cut(s) 389, 670
DdeI CTNAG 8 cut(s) 59, 363, 587, 600, 640, 651, 666, 726
DpnI GATC 5 cut(s) 246, 309, 347, 616, 714
DpnII GATC 5 cut(s) 244, 307, 345, 614, 712
EaeI YGGCCR 1 cut(s) 300
EciI GGCGGA 1 cut(s) 549
Ecl136II GAGCTC 1 cut(s) 604
Eco24I GRGCYC 1 cut(s) 606
Eco53kI GAGCTC 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 413
EcoICRI GAGCTC 1 cut(s) 604
EcoRII CCWGG 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 606
FaiI YATR 7 cut(s) 70, 200, 225, 442, 580, 582, 612
FaqI GGGAC 1 cut(s) 610
FauNDI CATATG 1 cut(s) 580
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 3 cut(s) 324, 327, 597
FokI GGATG 2 cut(s) 161, 337
FriOI GRGCYC 1 cut(s) 606
Fsp4HI GCNGC 3 cut(s) 324, 327, 597
GluI GCNGC 3 cut(s) 324, 327, 597
GsaI CCCAGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 1 cut(s) 302
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 3 cut(s) 188, 379, 736
Hpy188I TCNGA 2 cut(s) 12, 667
Hpy188III TCNNGA 4 cut(s) 76, 532, 681, 716
Hpy8I GTNNAC 3 cut(s) 188, 379, 736
HpyAV CCTTC 2 cut(s) 235, 549
HpyCH4III ACNGT 2 cut(s) 89, 550
HpyCH4IV ACGT 2 cut(s) 212, 234
HpyCH4V TGCA 4 cut(s) 251, 329, 421, 631
HpyF10VI GCNNNNNNNGC 2 cut(s) 418, 575
HpyF3I CTNAG 8 cut(s) 59, 363, 587, 600, 640, 651, 666, 726
HpySE526I ACGT 2 cut(s) 212, 234
Kzo9I GATC 5 cut(s) 244, 307, 345, 614, 712
LmnI GCTCC 2 cut(s) 203, 256
Lsp1109I GCAGC 2 cut(s) 313, 583
LweI GCATC 1 cut(s) 139
MaeII ACGT 2 cut(s) 212, 234
MaeIII GTNAC 3 cut(s) 89, 470, 706
MalI GATC 5 cut(s) 246, 309, 347, 616, 714
MboI GATC 5 cut(s) 244, 307, 345, 614, 712
MboII GAAGA 1 cut(s) 713
MflI RGATCY 2 cut(s) 244, 614
MhlI GDGCHC 1 cut(s) 606
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 2 cut(s) 79, 437
MluNI TGGCCA 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 3 cut(s) 367, 485, 640
Mox20I TGGCCA 1 cut(s) 302
MscI TGGCCA 1 cut(s) 302
MseI TTAA 2 cut(s) 44, 455
Msp20I TGGCCA 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 566
MvaI CCWGG 1 cut(s) 566
MwoI GCNNNNNNNGC 2 cut(s) 418, 575
NdeI CATATG 1 cut(s) 580
NdeII GATC 5 cut(s) 244, 307, 345, 614, 712
NlaIV GGNNCC 2 cut(s) 246, 530
NmuCI GTSAC 2 cut(s) 470, 706
PflMI CCANNNNNTGG 1 cut(s) 176
PkrI GCNGC 3 cut(s) 325, 328, 598
PshAI GACNNNNGTC 1 cut(s) 588
Psp124BI GAGCTC 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 564
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 2 cut(s) 246, 530
PsrI GAACNNNNNNTAC 2 cut(s) 100, 132
PsuI RGATCY 2 cut(s) 244, 614
RsaI GTAC 2 cut(s) 390, 671
RsaNI GTAC 2 cut(s) 389, 670
SacI GAGCTC 1 cut(s) 606
SaqAI TTAA 2 cut(s) 44, 455
SatI GCNGC 3 cut(s) 324, 327, 597
Sau3AI GATC 5 cut(s) 244, 307, 345, 614, 712
ScrFI CCNGG 1 cut(s) 566
SduI GDGCHC 1 cut(s) 606
SfaNI GCATC 1 cut(s) 139
SfcI CTRYAG 2 cut(s) 140, 549
Sse9I AATT 2 cut(s) 79, 437
SsiI CCGC 2 cut(s) 323, 560
SspI AATATT 1 cut(s) 689
SstI GAGCTC 1 cut(s) 606
StyD4I CCNGG 1 cut(s) 564
TaaI ACNGT 2 cut(s) 89, 550
TaiI ACGT 2 cut(s) 215, 237
TaqII GACCGA 1 cut(s) 396
TasI AATT 2 cut(s) 79, 437
TauI GCSGC 1 cut(s) 326
Tru1I TTAA 2 cut(s) 44, 455
Tru9I TTAA 2 cut(s) 44, 455
TscAI CASTG 2 cut(s) 258, 715
TseFI GTSAC 2 cut(s) 470, 706
TseI GCWGC 2 cut(s) 326, 596
Tsp45I GTSAC 2 cut(s) 470, 706
TspDTI ATGAA 3 cut(s) 17, 42, 333
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 2 cut(s) 258, 715
Van91I CCANNNNNTGG 1 cut(s) 176
XapI RAATTY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.