Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019857

Physical Location & Seq

Genomic Coordinates Reverse (-)

25260542 .. 25265194

Gene Structure 4653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGTTGATTCAATTGTTGGCTCTTGGGTCAGCAAGACCAAGGTGTCTTCCCGGGATAAATTTCTTGCACTTATTAGGAGAAGATGAACCTGCTTCTGATGTACTGTTCCGTATAGCTTTTGACATGGTCGATGCTCAGTGGCTTGCTATGAATGCATCCTGCATGCAGTTTAATGAGCTCTCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

62

Amino Acids

6.95

Weight (kDa)

4.65

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019857)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0333241 RchiOBHm_Chr1g0374341 RchiOBHm_Chr7g0213781
rosa_samantha	Rh1AG081200 Rh3DG352400 Rh5DG126400
rosa_wichuraiana	Rw1G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	42
Acc36I	ACCTGC	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	58
AfaI	GTAC	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	11
AluBI	AGCT	2 cut(s)	116, 178
AluI	AGCT	2 cut(s)	116, 178
Alw21I	GWGCWC	1 cut(s)	180
Ama87I	CYCGRG	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	58
AsuC2I	CCSGG	2 cut(s)	51, 52
AvaI	CYCGRG	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	180
BcnI	CCSGG	2 cut(s)	51, 52
BfuAI	ACCTGC	1 cut(s)	97
Bme1390I	CCNGG	2 cut(s)	51, 52
BmeT110I	CYCGRG	1 cut(s)	50
BmrFI	CCNGG	2 cut(s)	51, 52
BmsI	GCATC	2 cut(s)	121, 164
BpiI	GAAGAC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	166
BpuMI	CCSGG	2 cut(s)	51, 52
BsaJI	CCNNGG	2 cut(s)	38, 50
BseDI	CCNNGG	2 cut(s)	38, 50
BseGI	GGATG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	51
BsmI	GAATGC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	38, 50
BssT1I	CCWWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	144, 164
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	49, 50
BstV2I	GAAGAC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	143
BveI	ACCTGC	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	144, 164
Cfr9I	CCCGGG	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	2 cut(s)	124, 163
CviJI	RGCY	4 cut(s)	20, 116, 142, 178
CviKI_1	RGCY	4 cut(s)	20, 116, 142, 178
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	1 cut(s)	135
DrdI	GACNNNNNNGTC	1 cut(s)	42
DseDI	GACNNNNNNGTC	1 cut(s)	42
Ecl136II	GAGCTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	178
Eco88I	CYCGRG	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	38
EcoT22I	ATGCAT	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	2 cut(s)	127, 166
FaiI	YATR	4 cut(s)	113, 125, 149, 164
FatI	CATG	2 cut(s)	123, 162
FokI	GGATG	1 cut(s)	142
FriOI	GRGCYC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	166
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	2 cut(s)	127, 166
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	51
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	183
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4V	TGCA	4 cut(s)	67, 155, 162, 166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	127, 166
LpnPI	CCDG	3 cut(s)	64, 102, 172
LweI	GCATC	2 cut(s)	121, 164
MboII	GAAGA	2 cut(s)	38, 92
MfeI	CAATTG	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	2 cut(s)	11, 58
Mph1103I	ATGCAT	1 cut(s)	157
MseI	TTAA	1 cut(s)	171
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	51, 52
MunI	CAATTG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	2 cut(s)	51, 52
NlaIII	CATG	2 cut(s)	127, 166
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	1 cut(s)	166
PaeI	GCATGC	1 cut(s)	166
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	7
PflFI	GACNNNGTC	1 cut(s)	125
Psp124BI	GAGCTC	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	125
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	171
ScrFI	CCNGG	2 cut(s)	51, 52
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	4 cut(s)	44, 91, 118, 180
SfaNI	GCATC	2 cut(s)	121, 164
SmaI	CCCGGG	1 cut(s)	52
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	2 cut(s)	11, 58
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	49, 50
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	129
TasI	AATT	2 cut(s)	11, 58
TatI	WGTACW	1 cut(s)	100
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	99, 164
TspGWI	ACGGA	1 cut(s)	98
TspMI	CCCGGG	1 cut(s)	50
TspRI	CASTG	1 cut(s)	143
Tth111I	GACNNNGTC	1 cut(s)	125
XapI	RAATTY	1 cut(s)	58
XceI	RCATGY	1 cut(s)	166
XmaI	CCCGGG	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.