Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0019857

Physical Location & Seq

Genomic Coordinates Reverse (-)

11478398 .. 11484777

Gene Structure 6380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG126400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCAAAAGAGCATTTGTATTGTTCTTTTGCCACTGTTCCTGATTCTGATATTGGGTGTTTGTTCGTTGTCCTATTGTAATTCAGATATTGGGGACAGTGTGCTATTCAAATTTGGAAGTACTGTGGATTCAGTGATGGCGTCAGAAACTATGATGAGGGGAAGAAAAAGATTATTAATACAGTGTGCTGCTGGAAGTAATGAAAGTAAAGACACAATTGAGCAAAGGAGAACTAAACGTAATCATGTTTTTTTTGGTGGAGATGAATATGATCGAATTAACTTAGAGAGATGGAAAACGATGTTTGATCCTCAAATTGCTGAAGCATCAAATGTATGTGAGAATCTCACTGGAATTGAACATTCTGACAAACAATGTAGAGCTGACGACCAAAATGTTGGTGCAACTCTAAATGAAGATCCATTTAGAGGTGTAGAAGTTATGCCGGTAGAGACTGCTTGCACAAGAACACATCATGCTGAAAATTATGACAATCAAGGGGAAATTCAAGAAATCTGTGATGCTCAGGATTCTAGCATAACCGCAGCTGAATCTGAAAGTATATTTTCCGGTTTGGACGAAGGTCATCAGGAACAATTTGAGGATCTTACAGCCCAGGGTTGCGATCGTCTAGCCCATGTAGAGATAGGAAGGGATTGGTACAATAGGAAGGGATCATCTCCATTGTTGAAGATCCACCTCCCAGGAGCATTGACTTTTGAGGCTTCAAGAAGAACTACAAGCATCTTTCGGAGATTATTGTTCAAGCAAGGTGGGAGTCGAGCAACTTGGGAATACCCATTTGCTGTTGCTGGCATAAACATATCATTTATGTTGATTCAATTGCTGGCTCTTGGGTCAGCAAGACCAAGGTGTCTTCCCGGGATAAATTTCTTGCACTTATTAGGAGAAGATGAAGCTGCTTCTGATGTACTGTTCCGTATAGCTTTTGACATGGTTGATGCTCAGTGGCTTGCTATGAATGCATCCTACATGCAGTTTAATGAGCTCTCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

339

Amino Acids

38.01

Weight (kDa)

5.06

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	243 - 336	1.7e-14	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019857)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0333241 RchiOBHm_Chr1g0374341 RchiOBHm_Chr7g0213781
rosa_samantha	Rh1AG081200 Rh3DG352400 Rh5DG126400
rosa_wichuraiana	Rw1G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	873
AciI	CCGC	1 cut(s)	543
AclWI	GGATC	5 cut(s)	302, 413, 612, 682, 688
AcsI	RAATTY	3 cut(s)	110, 504, 889
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	3 cut(s)	121, 662, 933
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	7 cut(s)	109, 359, 509, 691, 729, 766, 842
AjnI	CCWGG	2 cut(s)	615, 703
AluBI	AGCT	5 cut(s)	383, 548, 920, 947, 1009
AluI	AGCT	5 cut(s)	383, 548, 920, 947, 1009
Alw21I	GWGCWC	1 cut(s)	1011
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	5 cut(s)	302, 413, 612, 682, 688
Ama87I	CYCGRG	1 cut(s)	881
ApeKI	GCWGC	3 cut(s)	188, 545, 920
ApoI	RAATTY	3 cut(s)	110, 504, 889
AseI	ATTAAT	1 cut(s)	176
AsuC2I	CCSGG	2 cut(s)	882, 883
AvaI	CYCGRG	1 cut(s)	881
BanII	GRGCYC	1 cut(s)	1011
BbsI	GAAGAC	1 cut(s)	869
Bbv12I	GWGCWC	1 cut(s)	1011
BbvI	GCAGC	3 cut(s)	175, 557, 907
BccI	CCATC	2 cut(s)	130, 285
BciT130I	CCWGG	2 cut(s)	617, 705
BcnI	CCSGG	2 cut(s)	882, 883
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	2 cut(s)	534, 632
BisI	GCNGC	3 cut(s)	189, 546, 921
BlsI	GCNGC	3 cut(s)	190, 547, 922
BmcAI	AGTACT	1 cut(s)	121
Bme1390I	CCNGG	4 cut(s)	617, 705, 882, 883
BmeT110I	CYCGRG	1 cut(s)	881
BmrFI	CCNGG	4 cut(s)	617, 705, 882, 883
BmsI	GCATC	5 cut(s)	335, 511, 753, 952, 995
BoxI	GACNNNNGTC	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	869
BpmI	CTGGAG	1 cut(s)	997
Bpu10I	CCTNAGC	1 cut(s)	525
BpuMI	CCSGG	2 cut(s)	882, 883
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	5 cut(s)	615, 616, 703, 869, 881
BsaWI	WCCGGW	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse118I	RCCGGY	1 cut(s)	445
Bse1I	ACTGG	1 cut(s)	355
BseBI	CCWGG	2 cut(s)	617, 705
BseDI	CCNNGG	5 cut(s)	615, 616, 703, 869, 881
BseGI	GGATG	1 cut(s)	986
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	2 cut(s)	539, 980
BseNI	ACTGG	1 cut(s)	355
BseXI	GCAGC	3 cut(s)	175, 557, 907
Bsh1285I	CGRYCG	1 cut(s)	628
BsiEI	CGRYCG	1 cut(s)	628
BsiHKAI	GWGCWC	1 cut(s)	1011
BsiHKCI	CYCGRG	1 cut(s)	881
BsiSI	CCGG	3 cut(s)	446, 570, 882
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	988
BsoBI	CYCGRG	1 cut(s)	881
Bsp1286I	GDGCHC	1 cut(s)	1011
Bsp143I	GATC	7 cut(s)	271, 307, 418, 604, 625, 674, 693
BspACI	CCGC	1 cut(s)	543
BspCNI	CTCAG	2 cut(s)	538, 979
BspPI	GGATC	5 cut(s)	302, 413, 612, 682, 688
BsrFI	RCCGGY	1 cut(s)	445
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	445
BssECI	CCNNGG	5 cut(s)	615, 616, 703, 869, 881
BssMI	GATC	7 cut(s)	271, 307, 418, 604, 625, 674, 693
BssNI	GRCGYC	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	869
Bst2UI	CCWGG	2 cut(s)	617, 705
Bst4CI	ACNGT	5 cut(s)	36, 98, 124, 183, 936
BstACI	GRCGYC	1 cut(s)	140
BstC8I	GCNNGC	4 cut(s)	460, 814, 849, 975
BstDEI	CTNAG	3 cut(s)	283, 525, 966
BstF5I	GGATG	1 cut(s)	986
BstKTI	GATC	7 cut(s)	274, 310, 421, 607, 628, 677, 696
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	7 cut(s)	271, 307, 418, 604, 625, 674, 693
BstMCI	CGRYCG	1 cut(s)	628
BstMWI	GCNNNNNNNGC	1 cut(s)	983
BstNI	CCWGG	2 cut(s)	617, 705
BstNSI	RCATGY	1 cut(s)	997
BstPAI	GACNNNNGTC	1 cut(s)	582
BstSCI	CCNGG	4 cut(s)	615, 703, 880, 881
BstV1I	GCAGC	3 cut(s)	175, 557, 907
BstV2I	GAAGAC	1 cut(s)	869
BstX2I	RGATCY	3 cut(s)	418, 604, 693
BstXI	CCANNNNNNTGG	1 cut(s)	398
BstYI	RGATCY	3 cut(s)	418, 604, 693
BtsCI	GGATG	1 cut(s)	986
BtsIMutI	CAGTG	6 cut(s)	32, 103, 138, 188, 348, 974
Cac8I	GCNNGC	4 cut(s)	460, 814, 849, 975
Cfr10I	RCCGGY	1 cut(s)	445
Cfr9I	CCCGGG	1 cut(s)	881
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	3 cut(s)	120, 661, 932
CspCI	CAANNNNNGTGG	2 cut(s)	754, 789
CviAII	CATG	5 cut(s)	245, 476, 638, 955, 994
CviQI	GTAC	3 cut(s)	120, 661, 932
DdeI	CTNAG	3 cut(s)	283, 525, 966
DpnI	GATC	7 cut(s)	273, 309, 420, 606, 627, 676, 695
DpnII	GATC	7 cut(s)	271, 307, 418, 604, 625, 674, 693
DrdI	GACNNNNNNGTC	1 cut(s)	873
DseDI	GACNNNNNNGTC	1 cut(s)	873
Ecl136II	GAGCTC	1 cut(s)	1009
Eco130I	CCWWGG	1 cut(s)	869
Eco24I	GRGCYC	1 cut(s)	1011
Eco53kI	GAGCTC	1 cut(s)	1009
Eco57I	CTGAAG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	881
EcoICRI	GAGCTC	1 cut(s)	1009
EcoRII	CCWGG	2 cut(s)	615, 703
EcoT14I	CCWWGG	1 cut(s)	869
EcoT22I	ATGCAT	1 cut(s)	988
EcoT38I	GRGCYC	1 cut(s)	1011
ErhI	CCWWGG	1 cut(s)	869
FaeI	CATG	5 cut(s)	248, 479, 641, 958, 997
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	5 cut(s)	244, 475, 637, 954, 993
Fnu4HI	GCNGC	3 cut(s)	189, 546, 921
FokI	GGATG	1 cut(s)	973
FriOI	GRGCYC	1 cut(s)	1011
Fsp4HI	GCNGC	3 cut(s)	189, 546, 921
FspBI	CTAG	2 cut(s)	534, 632
GluI	GCNGC	3 cut(s)	189, 546, 921
GsuI	CTGGAG	1 cut(s)	997
HapII	CCGG	3 cut(s)	446, 570, 882
HgaI	GACGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	5 cut(s)	248, 479, 641, 958, 997
HinfI	GANTC	7 cut(s)	43, 128, 343, 530, 551, 778, 838
HpaII	CCGG	3 cut(s)	446, 570, 882
Hpy188I	TCNGA	7 cut(s)	48, 85, 145, 367, 556, 753, 928
Hpy188III	TCNNGA	6 cut(s)	40, 509, 527, 590, 729, 1014
HpyAV	CCTTC	3 cut(s)	575, 645, 664
HpyCH4III	ACNGT	5 cut(s)	36, 98, 124, 183, 936
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	6 cut(s)	4, 404, 462, 898, 986, 997
HpyF10VI	GCNNNNNNNGC	1 cut(s)	983
HpyF3I	CTNAG	3 cut(s)	283, 525, 966
HpySE526I	ACGT	1 cut(s)	238
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	5 cut(s)	248, 479, 641, 958, 997
Kzo9I	GATC	7 cut(s)	271, 307, 418, 604, 625, 674, 693
LmnI	GCTCC	1 cut(s)	707
Lsp1109I	GCAGC	3 cut(s)	175, 557, 907
LweI	GCATC	5 cut(s)	335, 511, 753, 952, 995
MaeI	CTAG	2 cut(s)	534, 632
MaeII	ACGT	1 cut(s)	238
MalI	GATC	7 cut(s)	273, 309, 420, 606, 627, 676, 695
MboI	GATC	7 cut(s)	271, 307, 418, 604, 625, 674, 693
MboII	GAAGA	6 cut(s)	174, 428, 703, 744, 869, 923
MfeI	CAATTG	2 cut(s)	216, 842
MflI	RGATCY	3 cut(s)	418, 604, 693
MhlI	GDGCHC	1 cut(s)	1011
MlyI	GAGTC	1 cut(s)	787
MnlI	CCTC	6 cut(s)	150, 321, 422, 595, 710, 715
Mph1103I	ATGCAT	1 cut(s)	988
MseI	TTAA	3 cut(s)	176, 279, 1002
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	3 cut(s)	446, 570, 882
MspR9I	CCNGG	4 cut(s)	617, 705, 882, 883
MunI	CAATTG	2 cut(s)	216, 842
Mva1269I	GAATGC	1 cut(s)	988
MvaI	CCWGG	2 cut(s)	617, 705
MwoI	GCNNNNNNNGC	1 cut(s)	983
NciI	CCSGG	2 cut(s)	882, 883
NdeII	GATC	7 cut(s)	271, 307, 418, 604, 625, 674, 693
NlaIII	CATG	5 cut(s)	248, 479, 641, 958, 997
NsiI	ATGCAT	1 cut(s)	988
NspI	RCATGY	1 cut(s)	997
PasI	CCCWGGG	1 cut(s)	616
PctI	GAATGC	1 cut(s)	988
PfeI	GAWTC	6 cut(s)	43, 128, 343, 530, 551, 838
PkrI	GCNGC	3 cut(s)	190, 547, 922
Ple19I	CGATCG	1 cut(s)	628
PleI	GAGTC	1 cut(s)	786
PpsI	GAGTC	1 cut(s)	786
PshAI	GACNNNNGTC	1 cut(s)	582
PshBI	ATTAAT	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	1011
Psp6I	CCWGG	2 cut(s)	615, 703
PspGI	CCWGG	2 cut(s)	615, 703
PsuI	RGATCY	3 cut(s)	418, 604, 693
PvuI	CGATCG	1 cut(s)	628
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	3 cut(s)	121, 662, 933
RsaNI	GTAC	3 cut(s)	120, 661, 932
SacI	GAGCTC	1 cut(s)	1011
SaqAI	TTAA	3 cut(s)	176, 279, 1002
SatI	GCNGC	3 cut(s)	189, 546, 921
Sau3AI	GATC	7 cut(s)	271, 307, 418, 604, 625, 674, 693
ScaI	AGTACT	1 cut(s)	121
SchI	GAGTC	1 cut(s)	787
ScrFI	CCNGG	4 cut(s)	617, 705, 882, 883
SduI	GDGCHC	1 cut(s)	1011
SfaNI	GCATC	5 cut(s)	335, 511, 753, 952, 995
SmaI	CCCGGG	1 cut(s)	883
SsiI	CCGC	1 cut(s)	543
SspMI	CTAG	2 cut(s)	534, 632
SstI	GAGCTC	1 cut(s)	1011
StyD4I	CCNGG	4 cut(s)	615, 703, 880, 881
StyI	CCWWGG	1 cut(s)	869
TaaI	ACNGT	5 cut(s)	36, 98, 124, 183, 936
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	274, 781
TatI	WGTACW	2 cut(s)	119, 931
TfiI	GAWTC	6 cut(s)	43, 128, 343, 530, 551, 838
Tru1I	TTAA	3 cut(s)	176, 279, 1002
Tru9I	TTAA	3 cut(s)	176, 279, 1002
TscAI	CASTG	6 cut(s)	39, 103, 138, 188, 355, 974
TseI	GCWGC	3 cut(s)	188, 545, 920
TspDTI	ATGAA	5 cut(s)	216, 279, 429, 930, 995
TspGWI	ACGGA	1 cut(s)	929
TspMI	CCCGGG	1 cut(s)	881
TspRI	CASTG	6 cut(s)	39, 103, 138, 188, 355, 974
VspI	ATTAAT	1 cut(s)	176
XapI	RAATTY	3 cut(s)	110, 504, 889
XceI	RCATGY	1 cut(s)	997
XmaI	CCCGGG	1 cut(s)	881
XspI	CTAG	2 cut(s)	534, 632
ZrmI	AGTACT	1 cut(s)	121
Zsp2I	ATGCAT	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.