Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0019857

Physical Location & Seq

Genomic Coordinates Reverse (-)

42293401 .. 42295195

Gene Structure 1795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG352400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGAAAGATCAATTGTTGCTGCAATCACGAACAATTTGAGGATCTTACAGCCAGGGTTGCGATCGTCTAGCCCGTGTAGAGATAGGAAGGGATTGGTATTGTGTAGTGTTGTTCTATACTCACCCTGTATCTTTCGGAGATTATTGTTCAAGCAAGGTGGGAGTCGAGCAACTTGGGAATACCCATTTGCTGTTGCTGGCATAAACATATCATTTATGTTGATTCAATTGCTGGATCTTTGGTCAGCAAGACCAAGGTGTCTTCCTGGGATAAATTTCTTGCACTTATTAGGAGAAGATGAAGCTGCTTCTGATGTACTGTTCCATATAGCTTTTGACATGGTCGATGCTCAGTGGCTTGCTATGAATGCATCCTGCATGCAGTTTAATGAGCTCTCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

134

Amino Acids

15.11

Weight (kDa)

8.37

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	37 - 131	1.2e-14	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019857)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0333241 RchiOBHm_Chr1g0374341 RchiOBHm_Chr7g0213781
rosa_samantha	Rh1AG081200 Rh3DG352400 Rh5DG126400
rosa_wichuraiana	Rw1G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	258
AclWI	GGATC	2 cut(s)	50, 243
AcsI	RAATTY	1 cut(s)	274
AfaI	GTAC	1 cut(s)	318
AgsI	TTSAA	2 cut(s)	151, 227
AjnI	CCWGG	2 cut(s)	52, 265
AluBI	AGCT	3 cut(s)	305, 332, 394
AluI	AGCT	3 cut(s)	305, 332, 394
Alw21I	GWGCWC	1 cut(s)	396
AlwI	GGATC	2 cut(s)	50, 243
ApeKI	GCWGC	2 cut(s)	20, 305
ApoI	RAATTY	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	7, 292
BciT130I	CCWGG	2 cut(s)	54, 267
BfaI	CTAG	1 cut(s)	69
BisI	GCNGC	2 cut(s)	21, 306
BlsI	GCNGC	2 cut(s)	22, 307
Bme1390I	CCNGG	2 cut(s)	54, 267
BmrFI	CCNGG	2 cut(s)	54, 267
BmsI	GCATC	2 cut(s)	337, 380
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	382
BsaJI	CCNNGG	3 cut(s)	53, 254, 266
BseBI	CCWGG	2 cut(s)	54, 267
BseDI	CCNNGG	3 cut(s)	53, 254, 266
BseGI	GGATG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	365
BseXI	GCAGC	2 cut(s)	7, 292
Bsh1285I	CGRYCG	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	396
BsmI	GAATGC	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	4 cut(s)	8, 42, 62, 235
BspCNI	CTCAG	1 cut(s)	364
BspPI	GGATC	2 cut(s)	50, 243
BssECI	CCNNGG	3 cut(s)	53, 254, 266
BssMI	GATC	4 cut(s)	8, 42, 62, 235
BssT1I	CCWWGG	1 cut(s)	254
Bst2UI	CCWGG	2 cut(s)	54, 267
Bst4CI	ACNGT	1 cut(s)	321
BstC8I	GCNNGC	3 cut(s)	199, 360, 380
BstDEI	CTNAG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	371
BstKTI	GATC	4 cut(s)	11, 45, 65, 238
BstMBI	GATC	4 cut(s)	8, 42, 62, 235
BstMCI	CGRYCG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 368
BstNI	CCWGG	2 cut(s)	54, 267
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	2 cut(s)	52, 265
BstV1I	GCAGC	2 cut(s)	7, 292
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	42, 235
BstYI	RGATCY	2 cut(s)	42, 235
BtsCI	GGATG	1 cut(s)	371
BtsIMutI	CAGTG	1 cut(s)	359
Cac8I	GCNNGC	3 cut(s)	199, 360, 380
Csp6I	GTAC	1 cut(s)	317
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviAII	CATG	2 cut(s)	340, 379
CviJI	RGCY	6 cut(s)	52, 72, 305, 332, 358, 394
CviKI_1	RGCY	6 cut(s)	52, 72, 305, 332, 358, 394
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	4 cut(s)	10, 44, 64, 237
DpnII	GATC	4 cut(s)	8, 42, 62, 235
DrdI	GACNNNNNNGTC	1 cut(s)	258
DseDI	GACNNNNNNGTC	1 cut(s)	258
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	394
EcoICRI	GAGCTC	1 cut(s)	394
EcoRII	CCWGG	2 cut(s)	52, 265
EcoT14I	CCWWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	2 cut(s)	343, 382
FaiI	YATR	9 cut(s)	118, 203, 209, 218, 327, 329, 341, 365, 380
FatI	CATG	2 cut(s)	339, 378
Fnu4HI	GCNGC	2 cut(s)	21, 306
FokI	GGATG	1 cut(s)	358
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	2 cut(s)	21, 306
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	2 cut(s)	21, 306
GsuI	CTGGAG	1 cut(s)	382
Hin1II	CATG	2 cut(s)	343, 382
HinfI	GANTC	2 cut(s)	163, 223
HphI	GGTGA	1 cut(s)	114
Hpy188I	TCNGA	2 cut(s)	138, 313
Hpy188III	TCNNGA	2 cut(s)	28, 399
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4V	TGCA	5 cut(s)	23, 283, 371, 378, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 368
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	343, 382
Kzo9I	GATC	4 cut(s)	8, 42, 62, 235
LpnPI	CCDG	8 cut(s)	39, 66, 139, 183, 218, 252, 279, 388
Lsp1109I	GCAGC	2 cut(s)	7, 292
LweI	GCATC	2 cut(s)	337, 380
MaeI	CTAG	1 cut(s)	69
MalI	GATC	4 cut(s)	10, 44, 64, 237
MboI	GATC	4 cut(s)	8, 42, 62, 235
MboII	GAAGA	2 cut(s)	254, 308
MfeI	CAATTG	2 cut(s)	12, 227
MflI	RGATCY	2 cut(s)	42, 235
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	4 cut(s)	12, 34, 227, 274
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	1 cut(s)	33
Mph1103I	ATGCAT	1 cut(s)	373
MseI	TTAA	1 cut(s)	387
MspR9I	CCNGG	2 cut(s)	54, 267
MunI	CAATTG	2 cut(s)	12, 227
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	2 cut(s)	54, 267
MwoI	GCNNNNNNNGC	2 cut(s)	58, 368
NdeII	GATC	4 cut(s)	8, 42, 62, 235
NlaIII	CATG	2 cut(s)	343, 382
NsiI	ATGCAT	1 cut(s)	373
NspI	RCATGY	1 cut(s)	382
PaeI	GCATGC	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	223
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	22, 307
Ple19I	CGATCG	1 cut(s)	65
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	52, 265
PspGI	CCWGG	2 cut(s)	52, 265
PsuI	RGATCY	2 cut(s)	42, 235
PsyI	GACNNNGTC	1 cut(s)	341
PvuI	CGATCG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	2 cut(s)	21, 306
Sau3AI	GATC	4 cut(s)	8, 42, 62, 235
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	2 cut(s)	54, 267
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	5 cut(s)	160, 260, 307, 334, 396
SfaNI	GCATC	2 cut(s)	337, 380
SphI	GCATGC	1 cut(s)	382
Sse9I	AATT	4 cut(s)	12, 34, 227, 274
SspMI	CTAG	1 cut(s)	69
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	2 cut(s)	52, 265
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	166, 345
TasI	AATT	4 cut(s)	12, 34, 227, 274
TatI	WGTACW	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	1 cut(s)	359
TseI	GCWGC	2 cut(s)	20, 305
TspDTI	ATGAA	2 cut(s)	315, 380
TspRI	CASTG	1 cut(s)	359
Tth111I	GACNNNGTC	1 cut(s)	341
XapI	RAATTY	1 cut(s)	274
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	1 cut(s)	69
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.