Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0019857

Physical Location & Seq

Genomic Coordinates Reverse (-)

15094249 .. 15096833

Gene Structure 2585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTACTTTTTTTTTATTCACAAATATGAAAAAAAATCTCTTTTATTGTTGGGATTTTTTTTATATCTATTTTGCAGGAACAATTTGAGGATCTTCAGCACAGGGTTGCGATCGGCTAGCCCGCTTCAAGAAGAACTACAAGTACCTTTTGACGAGACTCACCCTGTATGCCTCTATCCTGTTTTTGAAGGCATCTTTCGGAGATTATTGTTCAAGCAAGGTGGGAGTCGAGCAACTTGGGAATACCCATTTGCTGTTGCTGGCATAAACATATCATTTATGTTGATTCAATTGCTGGCTCTTGGGTCAGCAAGACCAAGGTGTCTTCCCGGGATAAATTTCTTGCACTTATTAGGAGAAGATGAAGCTGCTTCTGATGTACTGTTCCGTATAGCTTTTGACATGGTTGATGCTCAGTGGCTTGCTATGAATGCATCCTACATGCAGTTTAATTTGGAAAGAGAACCATCTTTAGAAGATATCAAGAGTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

164

Amino Acids

18.97

Weight (kDa)

5.91

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	64 - 151	5.5e-14	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019857)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0333241 RchiOBHm_Chr1g0374341 RchiOBHm_Chr7g0213781
rosa_samantha	Rh1AG081200 Rh3DG352400 Rh5DG126400
rosa_wichuraiana	Rw1G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	321
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	79
AfaI	GTAC	3 cut(s)	5, 144, 381
AgsI	TTSAA	4 cut(s)	128, 188, 214, 290
AluBI	AGCT	2 cut(s)	368, 395
AluI	AGCT	2 cut(s)	368, 395
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	337
AsuC2I	CCSGG	2 cut(s)	330, 331
AsuHPI	GGTGA	1 cut(s)	152
AsuNHI	GCTAGC	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	1 cut(s)	475
BcnI	CCSGG	2 cut(s)	330, 331
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	117
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	2 cut(s)	330, 331
BmeT110I	CYCGRG	1 cut(s)	329
BmrFI	CCNGG	2 cut(s)	330, 331
BmsI	GCATC	3 cut(s)	201, 400, 443
BmtI	GCTAGC	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	317
BpuMI	CCSGG	2 cut(s)	330, 331
BsaJI	CCNNGG	2 cut(s)	317, 329
BseDI	CCNNGG	2 cut(s)	317, 329
BseGI	GGATG	1 cut(s)	434
BseMII	CTCAG	1 cut(s)	428
BseXI	GCAGC	1 cut(s)	355
Bsh1285I	CGRYCG	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	149
BsmI	GAATGC	1 cut(s)	436
BsoBI	CYCGRG	1 cut(s)	329
Bsp143I	GATC	2 cut(s)	90, 110
BspACI	CCGC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	427
BspOI	GCTAGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	317, 329
BssMI	GATC	2 cut(s)	90, 110
BssT1I	CCWWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	384
BstC8I	GCNNGC	5 cut(s)	118, 122, 262, 297, 423
BstDEI	CTNAG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	434
BstKTI	GATC	2 cut(s)	93, 113
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	2 cut(s)	90, 110
BstMCI	CGRYCG	1 cut(s)	113
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNSI	RCATGY	1 cut(s)	445
BstSCI	CCNGG	2 cut(s)	328, 329
BstV1I	GCAGC	1 cut(s)	355
BstV2I	GAAGAC	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	434
BtsIMutI	CAGTG	1 cut(s)	422
Cac8I	GCNNGC	5 cut(s)	118, 122, 262, 297, 423
Cfr9I	CCCGGG	1 cut(s)	329
Csp6I	GTAC	3 cut(s)	4, 143, 380
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	2 cut(s)	403, 442
CviJI	RGCY	6 cut(s)	116, 120, 299, 368, 395, 421
CviKI_1	RGCY	6 cut(s)	116, 120, 299, 368, 395, 421
CviQI	GTAC	3 cut(s)	4, 143, 380
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	2 cut(s)	92, 112
DpnII	GATC	2 cut(s)	90, 110
DrdI	GACNNNNNNGTC	1 cut(s)	321
DseDI	GACNNNNNNGTC	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	317
Eco32I	GATATC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	79
Eco88I	CYCGRG	1 cut(s)	329
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	317
EcoT22I	ATGCAT	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	2 cut(s)	406, 445
FatI	CATG	2 cut(s)	402, 441
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	1 cut(s)	421
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	1 cut(s)	369
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	2 cut(s)	406, 445
HinfI	GANTC	3 cut(s)	157, 226, 286
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	201, 376
Hpy188III	TCNNGA	2 cut(s)	128, 484
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	384
HpyCH4V	TGCA	4 cut(s)	75, 346, 434, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	1 cut(s)	414
Hsp92II	CATG	2 cut(s)	406, 445
Kzo9I	GATC	2 cut(s)	90, 110
LpnPI	CCDG	7 cut(s)	61, 87, 177, 192, 246, 281, 343
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	3 cut(s)	201, 400, 443
MaeI	CTAG	1 cut(s)	117
MalI	GATC	2 cut(s)	92, 112
MboI	GATC	2 cut(s)	90, 110
MboII	GAAGA	5 cut(s)	85, 143, 317, 371, 488
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	1 cut(s)	90
MluCI	AATT	4 cut(s)	82, 290, 337, 451
MlyI	GAGTC	2 cut(s)	151, 235
MnlI	CCTC	2 cut(s)	81, 182
Mph1103I	ATGCAT	1 cut(s)	436
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	2 cut(s)	330, 331
MunI	CAATTG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	436
MwoI	GCNNNNNNNGC	1 cut(s)	431
NciI	CCSGG	2 cut(s)	330, 331
NdeII	GATC	2 cut(s)	90, 110
NheI	GCTAGC	1 cut(s)	116
NlaIII	CATG	2 cut(s)	406, 445
NsiI	ATGCAT	1 cut(s)	436
NspI	RCATGY	1 cut(s)	445
PctI	GAATGC	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	370
Ple19I	CGATCG	1 cut(s)	113
PleI	GAGTC	2 cut(s)	151, 234
PpsI	GAGTC	2 cut(s)	151, 234
PsrI	GAACNNNNNNTAC	2 cut(s)	126, 158
PsuI	RGATCY	1 cut(s)	90
PvuI	CGATCG	1 cut(s)	113
RsaI	GTAC	3 cut(s)	5, 144, 381
RsaNI	GTAC	3 cut(s)	4, 143, 380
RseI	CAYNNNNRTG	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	2 cut(s)	90, 110
SchI	GAGTC	2 cut(s)	151, 235
ScrFI	CCNGG	2 cut(s)	330, 331
SetI	ASST	5 cut(s)	148, 223, 323, 370, 397
SfaNI	GCATC	3 cut(s)	201, 400, 443
SmaI	CCCGGG	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	4 cut(s)	82, 290, 337, 451
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	328, 329
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	384
TaqI	TCGA	1 cut(s)	229
TasI	AATT	4 cut(s)	82, 290, 337, 451
TatI	WGTACW	2 cut(s)	3, 379
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	1 cut(s)	422
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	3 cut(s)	42, 378, 443
TspGWI	ACGGA	1 cut(s)	377
TspMI	CCCGGG	1 cut(s)	329
TspRI	CASTG	1 cut(s)	422
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	1 cut(s)	445
XmaI	CCCGGG	1 cut(s)	329
XspI	CTAG	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.