RchiOBHm_Chr1g0374341

ELMO domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0019857
Physical Location & Seq
Reverse (-)
62184569 .. 62189668
5100 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59815

Sequence Viewer

Length: 189 bp
ATGTTGATTCAATTGCTGGATCTTTGGTCAGCAAGACCAAGGTGTCTTCCTGGGATAAATTTCTTGCACTTATTAGGAGAAGATGAAGCTGCTTCTGATGTACTGTTCCATATAGCTTTTGACATGGTCTATGCTCAGTGGCTTGCTATGAATGCATCATGCATGCAGTTTAATGAGCTCTCCAGATGA

Protein Analysis

62

Amino Acids

7.13

Weight (kDa)

4.63

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019857)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0333241 RchiOBHm_Chr1g0374341 RchiOBHm_Chr7g0213781
rosa_samantha Rh1AG081200 Rh3DG352400 Rh5DG126400
rosa_wichuraiana Rw1G007180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 42
AclWI GGATC 1 cut(s) 27
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 1 cut(s) 102
AgsI TTSAA 1 cut(s) 11
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 3 cut(s) 89, 116, 178
AluI AGCT 3 cut(s) 89, 116, 178
Alw21I GWGCWC 1 cut(s) 180
AlwI GGATC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 58
BanII GRGCYC 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 51
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 38, 50
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 38, 50
BseMII CTCAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 180
BsmI GAATGC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 148
BspPI GGATC 1 cut(s) 27
BssECI CCNNGG 2 cut(s) 38, 50
BssMI GATC 1 cut(s) 19
BssT1I CCWWGG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 144, 164
BstDEI CTNAG 1 cut(s) 135
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 2 cut(s) 144, 164
Csp6I GTAC 1 cut(s) 101
CviAII CATG 3 cut(s) 124, 159, 163
CviJI RGCY 4 cut(s) 89, 116, 142, 178
CviKI_1 RGCY 4 cut(s) 89, 116, 142, 178
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
DrdI GACNNNNNNGTC 1 cut(s) 42
DseDI GACNNNNNNGTC 1 cut(s) 42
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 38
EcoT22I ATGCAT 2 cut(s) 157, 164
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 3 cut(s) 127, 162, 166
FaiI YATR 7 cut(s) 111, 113, 125, 132, 149, 160, 164
FatI CATG 3 cut(s) 123, 158, 162
Fnu4HI GCNGC 1 cut(s) 90
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 166
Hin1II CATG 3 cut(s) 127, 162, 166
HinfI GANTC 1 cut(s) 7
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 4 cut(s) 67, 155, 162, 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 3 cut(s) 127, 162, 166
Kzo9I GATC 1 cut(s) 19
LpnPI CCDG 3 cut(s) 2, 36, 63
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 164
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 2 cut(s) 38, 92
MfeI CAATTG 1 cut(s) 11
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 2 cut(s) 11, 58
Mph1103I ATGCAT 2 cut(s) 157, 164
MseI TTAA 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 1 cut(s) 11
Mva1269I GAATGC 1 cut(s) 157
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 19
NlaIII CATG 3 cut(s) 127, 162, 166
NsiI ATGCAT 2 cut(s) 157, 164
NspI RCATGY 1 cut(s) 166
PaeI GCATGC 1 cut(s) 166
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PsuI RGATCY 1 cut(s) 19
PsyI GACNNNGTC 1 cut(s) 125
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 180
SetI ASST 4 cut(s) 44, 91, 118, 180
SfaNI GCATC 1 cut(s) 164
SphI GCATGC 1 cut(s) 166
Sse9I AATT 2 cut(s) 11, 58
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 105
TasI AATT 2 cut(s) 11, 58
TatI WGTACW 1 cut(s) 100
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 143
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 2 cut(s) 99, 164
TspRI CASTG 1 cut(s) 143
Tth111I GACNNNGTC 1 cut(s) 125
XapI RAATTY 1 cut(s) 58
XceI RCATGY 1 cut(s) 166
Zsp2I ATGCAT 2 cut(s) 157, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.