Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0019857

Physical Location & Seq

Genomic Coordinates Forward (+)

13918418 .. 13930584

Gene Structure 12167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG081200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAAACTCAATCACTATCCTAGAGTCAGGGAACAATTTGAGGATCTTACAGCCCAGGGTTGCGATCGTCTAGCCCGTGTAGAGATAGGAAGGGATTGGTACAATAGGAAGGGATCATCGCCATTGTTGAAGATCCACCTCCCAGGAGCATTGACTTTTGAGGCTTTAAGAAGAACTACAAGCATCTTTCGGAGATTATTGTTCAAGCAAGGTGGGAGTCGAGCAACTTGGGAATACCCATTTGCTGTTGCTGGCATAAACATATCATTTATGTTGATTCAATTGCTGGCTCTTGGGTCAGCAAGACCAAGGTGTCTTCCAGGGATAAATTTCTTGCACTTATTAGGAGAAGATGAAGCTGCTTCTGATGTACTGTTCCGTATAGCTTTTGACATGGTCGATGCTCAGAAGATGAATCCTAAATTTGGTGAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko05100 ko05131 map05100 map05131

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

145

Amino Acids

16.55

Weight (kDa)

9.75

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	57 - 135	3.9e-08	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019857)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0333241 RchiOBHm_Chr1g0374341 RchiOBHm_Chr7g0213781
rosa_samantha	Rh1AG081200 Rh3DG352400 Rh5DG126400
rosa_wichuraiana	Rw1G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	312
AclWI	GGATC	3 cut(s)	51, 121, 127
AcsI	RAATTY	2 cut(s)	328, 422
AfaI	GTAC	2 cut(s)	101, 372
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgsI	TTSAA	3 cut(s)	130, 205, 281
AjnI	CCWGG	3 cut(s)	54, 142, 319
AluBI	AGCT	2 cut(s)	359, 386
AluI	AGCT	2 cut(s)	359, 386
AlwI	GGATC	3 cut(s)	51, 121, 127
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	2 cut(s)	328, 422
BbsI	GAAGAC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	346
BciT130I	CCWGG	3 cut(s)	56, 144, 321
BfaI	CTAG	2 cut(s)	21, 71
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	3 cut(s)	56, 144, 321
BmrFI	CCNGG	3 cut(s)	56, 144, 321
BmsI	GCATC	2 cut(s)	192, 391
BpiI	GAAGAC	1 cut(s)	308
BsaJI	CCNNGG	5 cut(s)	54, 55, 142, 308, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
BseBI	CCWGG	3 cut(s)	56, 144, 321
BseDI	CCNNGG	5 cut(s)	54, 55, 142, 308, 320
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMII	CTCAG	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	346
Bsh1285I	CGRYCG	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	425
Bsp143I	GATC	4 cut(s)	43, 64, 113, 132
BspCNI	CTCAG	1 cut(s)	418
BspPI	GGATC	3 cut(s)	51, 121, 127
BssECI	CCNNGG	5 cut(s)	54, 55, 142, 308, 320
BssMI	GATC	4 cut(s)	43, 64, 113, 132
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	3 cut(s)	56, 144, 321
Bst4CI	ACNGT	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	253, 288
BstDEI	CTNAG	1 cut(s)	405
BstKTI	GATC	4 cut(s)	46, 67, 116, 135
BstMBI	GATC	4 cut(s)	43, 64, 113, 132
BstMCI	CGRYCG	1 cut(s)	67
BstNI	CCWGG	3 cut(s)	56, 144, 321
BstSCI	CCNGG	3 cut(s)	54, 142, 319
BstV1I	GCAGC	1 cut(s)	346
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	2 cut(s)	43, 132
BstYI	RGATCY	2 cut(s)	43, 132
BtgZI	GCGATG	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	253, 288
Csp6I	GTAC	2 cut(s)	100, 371
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	6 cut(s)	53, 74, 164, 290, 359, 386
CviKI_1	RGCY	6 cut(s)	53, 74, 164, 290, 359, 386
CviQI	GTAC	2 cut(s)	100, 371
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	4 cut(s)	45, 66, 115, 134
DpnII	GATC	4 cut(s)	43, 64, 113, 132
DrdI	GACNNNNNNGTC	1 cut(s)	312
DseDI	GACNNNNNNGTC	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	308
EcoRII	CCWGG	3 cut(s)	54, 142, 319
EcoT14I	CCWWGG	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	1 cut(s)	397
FaiI	YATR	5 cut(s)	257, 263, 272, 383, 395
FatI	CATG	1 cut(s)	393
Fnu4HI	GCNGC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	2 cut(s)	21, 71
GluI	GCNGC	1 cut(s)	360
Hin1II	CATG	1 cut(s)	397
HinfI	GANTC	4 cut(s)	24, 217, 277, 415
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	3 cut(s)	192, 367, 408
Hpy8I	GTNNAC	1 cut(s)	431
HpyAV	CCTTC	2 cut(s)	84, 103
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4V	TGCA	1 cut(s)	337
HpyF3I	CTNAG	1 cut(s)	405
Hsp92II	CATG	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	43, 64, 113, 132
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	9 cut(s)	13, 41, 68, 129, 156, 237, 272, 306, 333
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	2 cut(s)	192, 391
MaeI	CTAG	2 cut(s)	21, 71
MalI	GATC	4 cut(s)	45, 66, 115, 134
MboI	GATC	4 cut(s)	43, 64, 113, 132
MboII	GAAGA	5 cut(s)	142, 183, 308, 362, 421
MfeI	CAATTG	1 cut(s)	281
MflI	RGATCY	2 cut(s)	43, 132
MluCI	AATT	4 cut(s)	35, 281, 328, 422
MlyI	GAGTC	2 cut(s)	33, 226
MnlI	CCTC	3 cut(s)	34, 149, 154
MseI	TTAA	1 cut(s)	167
MspR9I	CCNGG	3 cut(s)	56, 144, 321
MunI	CAATTG	1 cut(s)	281
MvaI	CCWGG	3 cut(s)	56, 144, 321
NdeII	GATC	4 cut(s)	43, 64, 113, 132
NlaIII	CATG	1 cut(s)	397
PasI	CCCWGGG	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	277, 415
PflFI	GACNNNGTC	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	361
Ple19I	CGATCG	1 cut(s)	67
PleI	GAGTC	2 cut(s)	32, 225
PpsI	GAGTC	2 cut(s)	32, 225
Psp6I	CCWGG	3 cut(s)	54, 142, 319
PspGI	CCWGG	3 cut(s)	54, 142, 319
PsuI	RGATCY	2 cut(s)	43, 132
PsyI	GACNNNGTC	1 cut(s)	395
PvuI	CGATCG	1 cut(s)	67
RsaI	GTAC	2 cut(s)	101, 372
RsaNI	GTAC	2 cut(s)	100, 371
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	4 cut(s)	43, 64, 113, 132
SchI	GAGTC	2 cut(s)	33, 226
ScrFI	CCNGG	3 cut(s)	56, 144, 321
SetI	ASST	5 cut(s)	141, 214, 314, 361, 388
SfaNI	GCATC	2 cut(s)	192, 391
Sse9I	AATT	4 cut(s)	35, 281, 328, 422
SspMI	CTAG	2 cut(s)	21, 71
StyD4I	CCNGG	3 cut(s)	54, 142, 319
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	1 cut(s)	375
TaqI	TCGA	2 cut(s)	220, 399
TasI	AATT	4 cut(s)	35, 281, 328, 422
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	2 cut(s)	277, 415
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	3 cut(s)	17, 369, 428
TspGWI	ACGGA	1 cut(s)	368
Tth111I	GACNNNGTC	1 cut(s)	395
XapI	RAATTY	2 cut(s)	328, 422
XspI	CTAG	2 cut(s)	21, 71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.