RchiOBHm_Chr1g0335081

U5 small nuclear ribonucleoprotein 200 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017748
Physical Location & Seq
Forward (+)
27266768 .. 27267013
246 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 246 bp
ATGCATGGCTTAGAAGGTGATGTTCTGACAGAAGATAGTAAGCTGGAGGAGAGGCGAGCTGATTTGATCCATTCCACTGCAACCATCTTGGAGAAGAACAACATGATCAAATATGATAGAAAAAGTGGATACTTTCATGTTACAGACTTGGGTCGCATTGCCAGTCATTATTATATAACACATGGAACAGTGTGCACATATAATGAGCATTTAAAGCCAACGATGGGGGACAGTGAGCTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
DEAD Helicase_C Sec63

Protein Analysis

81

Amino Acids

9.27

Weight (kDa)

5.79

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec63 PF02889 48 - 80 6.5e-09 Sec63 Brl domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 224
AluBI AGCT 3 cut(s) 43, 59, 238
AluI AGCT 3 cut(s) 43, 59, 238
Alw21I GWGCWC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 193
AlwI GGATC 1 cut(s) 61
ApaLI GTGCAC 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 197
BccI CCATC 2 cut(s) 92, 217
BciVI GTATCC 1 cut(s) 122
BclI TGATCA 1 cut(s) 105
BfuI GTATCC 1 cut(s) 122
BoxI GACNNNNGTC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 197
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 2 cut(s) 66, 105
BspPI GGATC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 156
BsrI ACTGG 1 cut(s) 162
BssMI GATC 2 cut(s) 66, 105
Bst4CI ACNGT 2 cut(s) 190, 233
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 10
BstKTI GATC 2 cut(s) 69, 108
BstMBI GATC 2 cut(s) 66, 105
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstPAI GACNNNNGTC 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 197
BsuI GTATCC 1 cut(s) 122
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 3 cut(s) 75, 195, 238
Cac8I GCNNGC 1 cut(s) 57
CviAII CATG 4 cut(s) 5, 103, 137, 182
CviJI RGCY 5 cut(s) 9, 43, 59, 217, 238
CviKI_1 RGCY 5 cut(s) 9, 43, 59, 217, 238
DdeI CTNAG 1 cut(s) 10
DpnI GATC 2 cut(s) 68, 107
DpnII GATC 2 cut(s) 66, 105
DraI TTTAAA 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 8, 106, 140, 185
FaiI YATR 9 cut(s) 6, 104, 114, 138, 174, 176, 183, 199, 201
FaqI GGGAC 1 cut(s) 242
FatI CATG 4 cut(s) 4, 102, 136, 181
FbaI TGATCA 1 cut(s) 105
GsuI CTGGAG 1 cut(s) 65
Hin1II CATG 4 cut(s) 8, 106, 140, 185
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 1 cut(s) 27
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 1 cut(s) 8
HpyCH4III ACNGT 2 cut(s) 190, 233
HpyCH4V TGCA 3 cut(s) 4, 80, 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 1 cut(s) 10
Hsp92II CATG 4 cut(s) 8, 106, 140, 185
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 2 cut(s) 66, 105
LpnPI CCDG 2 cut(s) 29, 175
MaeIII GTNAC 1 cut(s) 139
MalI GATC 2 cut(s) 68, 107
MboI GATC 2 cut(s) 66, 105
MboII GAAGA 2 cut(s) 44, 106
MhlI GDGCHC 1 cut(s) 197
MnlI CCTC 2 cut(s) 40, 45
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 214
NdeII GATC 2 cut(s) 66, 105
NlaIII CATG 4 cut(s) 8, 106, 140, 185
NsiI ATGCAT 1 cut(s) 6
PshAI GACNNNNGTC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 212
Sau3AI GATC 2 cut(s) 66, 105
SduI GDGCHC 1 cut(s) 197
SetI ASST 4 cut(s) 19, 45, 61, 240
SgeI CNNG 9 cut(s) 17, 56, 68, 100, 115, 149, 160, 174, 194
TaaI ACNGT 2 cut(s) 190, 233
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 3 cut(s) 82, 195, 238
TspDTI ATGAA 1 cut(s) 125
TspRI CASTG 3 cut(s) 82, 195, 238
VneI GTGCAC 1 cut(s) 193
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.