RchiOBHm_Chr1g0336491

Potassium channel

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
28203287 .. 28203915
629 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 543 bp
ATGAAGGCCAACAACCCCAATCCGTCAATCAGCTGTAGTCTTGTGCACATTGTCGTATATTTCTTTCTTGCAACTATGATGTGCTTTTCTACTTCTTCTAATTTCACAGGCATGGACGACAGTGGATATATATTTATGGATGTGCTATATTTTGTGGTAGTTACTACTCTTTCTGTTGGGTATGGCGACATACATCCCCGTATGACAGGTTCAAAGTTATTCACATGTTTATTGGTTGTCTTAGGGCATCATATTTTGCAAAGTTATATTTGGGGGAAGCTGAAAGCTAAGTTTCCCCATAATCTAAGTGAACTCCAGAGGAAAATAATCACCGGTATTTTGGCACTGGGAGCTGTTCTTATTTCAATATTTGGAGGGATGTGGGGTATTTATTCTCTTGAGAATGGGATTATTGTTAATAAAAAGGACTACAAATTGATTAATGCTACAGATTCCTTCTATTTGTCAATGATGTCACTGTCTACTGAAGGTTTTGGAGATTTCTCTTTTAAGACGGTACGTGGGAGGGTGTTTGCAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

180

Amino Acids

20.01

Weight (kDa)

8.98

Isoelectric Point (pI)

25.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 17 - 82 5e-10 Ion channel
Ion_trans_2 PF07885 120 - 180 1.5e-06 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018956)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 482
AcuI CTGAAG 1 cut(s) 507
AfaI GTAC 1 cut(s) 519
AflIII ACRYGT 1 cut(s) 224
AgeI ACCGGT 1 cut(s) 332
AgsI TTSAA 2 cut(s) 213, 366
AluBI AGCT 4 cut(s) 33, 280, 287, 353
AluI AGCT 4 cut(s) 33, 280, 287, 353
Alw21I GWGCWC 1 cut(s) 48
Alw44I GTGCAC 1 cut(s) 44
AoxI GGCC 1 cut(s) 6
ApaLI GTGCAC 1 cut(s) 44
AseI ATTAAT 1 cut(s) 441
AsiGI ACCGGT 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 322
BaeGI GKGCMC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 48
BfmI CTRYAG 2 cut(s) 34, 447
BmrI ACTGGG 1 cut(s) 356
BmsI GCATC 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 356
BpmI CTGGAG 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 419
BsaAI YACGTR 1 cut(s) 521
BsaWI WCCGGW 1 cut(s) 332
Bse118I RCCGGY 1 cut(s) 332
Bse1I ACTGG 1 cut(s) 351
BseGI GGATG 3 cut(s) 145, 193, 384
BseNI ACTGG 1 cut(s) 351
BseSI GKGCMC 1 cut(s) 48
BshFI GGCC 1 cut(s) 8
BshTI ACCGGT 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 333
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 48
BspANI GGCC 1 cut(s) 8
BsrFI RCCGGY 1 cut(s) 332
BsrI ACTGG 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 332
Bst4CI ACNGT 3 cut(s) 122, 480, 517
BstBAI YACGTR 1 cut(s) 521
BstDEI CTNAG 3 cut(s) 241, 288, 305
BstF5I GGATG 3 cut(s) 145, 193, 384
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 228
BstSFI CTRYAG 2 cut(s) 34, 447
BstSLI GKGCMC 1 cut(s) 48
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 3 cut(s) 145, 193, 384
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 4 cut(s) 127, 344, 476, 543
Cfr10I RCCGGY 1 cut(s) 332
Csp6I GTAC 1 cut(s) 518
CspAI ACCGGT 1 cut(s) 332
CviAII CATG 2 cut(s) 112, 225
CviJI RGCY 5 cut(s) 8, 33, 280, 287, 353
CviKI_1 RGCY 5 cut(s) 8, 33, 280, 287, 353
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 3 cut(s) 241, 288, 305
Eco57I CTGAAG 1 cut(s) 507
FaeI CATG 2 cut(s) 115, 228
FatI CATG 2 cut(s) 111, 224
FblI GTMKAC 1 cut(s) 482
FokI GGATG 3 cut(s) 152, 180, 391
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 333
Hin1II CATG 2 cut(s) 115, 228
HinfI GANTC 1 cut(s) 452
HpaII CCGG 1 cut(s) 333
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 3 cut(s) 46, 311, 483
Hpy188III TCNNGA 2 cut(s) 316, 398
Hpy8I GTNNAC 3 cut(s) 46, 311, 483
HpyAV CCTTC 2 cut(s) 466, 482
HpyCH4III ACNGT 3 cut(s) 122, 480, 517
HpyCH4IV ACGT 1 cut(s) 520
HpyCH4V TGCA 4 cut(s) 46, 71, 259, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 3 cut(s) 241, 288, 305
HpySE526I ACGT 1 cut(s) 520
Hsp92II CATG 2 cut(s) 115, 228
LmnI GCTCC 1 cut(s) 350
LpnPI CCDG 5 cut(s) 93, 192, 329, 332, 346
LweI GCATC 1 cut(s) 256
MaeII ACGT 1 cut(s) 520
MaeIII GTNAC 2 cut(s) 160, 474
MboII GAAGA 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 2 cut(s) 100, 434
MnlI CCTC 3 cut(s) 312, 368, 519
MseI TTAA 3 cut(s) 417, 441, 510
MslI CAYNNNNRTG 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 350
NlaIII CATG 2 cut(s) 115, 228
NmuCI GTSAC 1 cut(s) 474
NspI RCATGY 1 cut(s) 228
PciI ACATGT 1 cut(s) 224
PfeI GAWTC 1 cut(s) 452
PinAI ACCGGT 1 cut(s) 332
Ppu21I YACGTR 1 cut(s) 521
PscI ACATGT 1 cut(s) 224
PshBI ATTAAT 1 cut(s) 441
PsrI GAACNNNNNNTAC 2 cut(s) 193, 225
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 3 cut(s) 417, 441, 510
SduI GDGCHC 1 cut(s) 48
SetI ASST 7 cut(s) 35, 211, 282, 289, 355, 493, 523
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 2 cut(s) 34, 447
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 2 cut(s) 100, 434
SspI AATATT 1 cut(s) 369
TaaI ACNGT 3 cut(s) 122, 480, 517
TaiI ACGT 1 cut(s) 523
TasI AATT 2 cut(s) 100, 434
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 3 cut(s) 417, 441, 510
Tru9I TTAA 3 cut(s) 417, 441, 510
TscAI CASTG 4 cut(s) 127, 351, 483, 543
TseFI GTSAC 1 cut(s) 474
Tsp45I GTSAC 1 cut(s) 474
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 12
TspRI CASTG 4 cut(s) 127, 351, 483, 543
VneI GTGCAC 1 cut(s) 44
VspI ATTAAT 1 cut(s) 441
XceI RCATGY 1 cut(s) 228
XmiI GTMKAC 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.