Rroxscaffold_4G00315630

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0018956
Physical Location & Seq
Reverse (-)
40036417 .. 40038023
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315630.1

Sequence Viewer

Length: 846 bp
ATGGCGTCGTCCAGTGAAGGAGATGGGAATTTGGTGGATGATTCTTTCGAGTTGTACGTGACAGCCGCTGTTGAGACTTTGGTGACCCAACTGATGAATGCACGAAAACTCATTAACGAATTGGACAAGGACTTGGAGAATGAGAGAACTCTGAGTGGCAAGTTGGGAACAGATGCTGCAGATTTGAGGGCCGAGTTGTGTACTGCAAAAGAACGCAATGGGGAATTGGAGAAGGACTTGGCAGCTGAGCTAACCAAGAGTCGCAATTTTGACGACTCAATCTGGACAGAGGCCAACAACCCCAAGCCGTCAATCAAATGTTGTCTTGGGCACATTGTCGTATATTTCTTGGTTGCAATTCTGATATGCTATTTTAATTACCGAAGGTTCACAGGCATGGATAGAGGAAATATACTTACGAATGCCCTATATTTTGCAGTTGCTACTTGTCTCTCTGTTGGTTATATTTGGGACAAGCTGAAAGCTAAGTTTCTCCAAAATGTGAGTGAACCCAAGAGGACAATAATCATTGCTCTTTTGACATTGGGAGCTGTTCTTATTTCAATATTTGGAGGGATGTGGGGAATTTATGTTTATGAGAATGGGAAGAATGTTGATGACATAAAGGAATACAAATTGAATGCCACAGATTCATTCTATTTGTCAATGATGTCTCTGTCTACTGAAGGTTTTGGTGATTTTTCTTTTAAGACAGTACATGGGAGGGTGTTTGCAGTGTTCTGGTTACTACTTTTTCAACCTTTTTATGTTTTTGCTTTGACACATCTTATGAAACTTGTTGCAATGGCGACAAGGCACATTCTCCCTGCAGGTATTGCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

281

Amino Acids

31.47

Weight (kDa)

5.66

Isoelectric Point (pI)

27.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 186 - 267 6.4e-09 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018956)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0336491
rosa_laevigata RLG00000029363 RLG00000029365 RLG00000029368
rosa_multiflora Rmu_sc0001981.1_g000032
rosa_roxburghii Rroxscaffold_4G00315580 Rroxscaffold_4G00315630
rosa_samantha Rh1AG146300 Rh1DG153200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 821
AccI GTMKAC 1 cut(s) 680
AciI CCGC 1 cut(s) 66
AcsI RAATTY 2 cut(s) 28, 585
AcuI CTGAAG 1 cut(s) 705
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 56, 202, 717
AgsI TTSAA 3 cut(s) 564, 640, 758
AluBI AGCT 5 cut(s) 245, 250, 478, 485, 551
AluI AGCT 5 cut(s) 245, 250, 478, 485, 551
Alw26I GTCTC 3 cut(s) 68, 455, 678
AlwNI CAGNNNCTG 2 cut(s) 68, 176
AoxI GGCC 2 cut(s) 189, 291
ApeKI GCWGC 2 cut(s) 176, 242
ApoI RAATTY 2 cut(s) 28, 585
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 2 cut(s) 94, 707
BaeGI GKGCMC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 163, 254
BccI CCATC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 292
BcoDI GTCTC 3 cut(s) 68, 455, 678
BfmI CTRYAG 2 cut(s) 177, 828
BfuAI ACCTGC 1 cut(s) 821
BisI GCNGC 3 cut(s) 66, 177, 243
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 3 cut(s) 67, 178, 244
BmgT120I GGNCC 1 cut(s) 189
BmsI GCATC 1 cut(s) 163
Bpu1102I GCTNAGC 1 cut(s) 246
BsaAI YACGTR 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 12
Bse3DI GCAATG 3 cut(s) 223, 528, 810
BseGI GGATG 2 cut(s) 43, 582
BseMI GCAATG 3 cut(s) 223, 528, 810
BseMII CTCAG 2 cut(s) 143, 237
BseNI ACTGG 1 cut(s) 12
BseSI GKGCMC 1 cut(s) 333
BseXI GCAGC 2 cut(s) 163, 254
BshFI GGCC 2 cut(s) 191, 293
BslFI GGGAC 1 cut(s) 485
BsmAI GTCTC 3 cut(s) 68, 455, 678
BsmFI GGGAC 1 cut(s) 485
BsmI GAATGC 3 cut(s) 103, 427, 646
BsnI GGCC 2 cut(s) 191, 293
Bsp1286I GDGCHC 1 cut(s) 333
Bsp1720I GCTNAGC 1 cut(s) 246
BspACI CCGC 1 cut(s) 66
BspANI GGCC 2 cut(s) 191, 293
BspCNI CTCAG 2 cut(s) 144, 238
BspMAI CTGCAG 2 cut(s) 181, 832
BspMI ACCTGC 1 cut(s) 821
BsrDI GCAATG 3 cut(s) 223, 528, 810
BsrI ACTGG 1 cut(s) 12
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 1 cut(s) 715
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 836
BstBAI YACGTR 1 cut(s) 58
BstDEI CTNAG 3 cut(s) 152, 246, 486
BstEII GGTNACC 1 cut(s) 82
BstF5I GGATG 2 cut(s) 43, 582
BstMAI GTCTC 3 cut(s) 68, 455, 678
BstMWI GCNNNNNNNGC 1 cut(s) 836
BstPI GGTNACC 1 cut(s) 82
BstSFI CTRYAG 2 cut(s) 177, 828
BstSLI GKGCMC 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 163, 254
BsuRI GGCC 2 cut(s) 191, 293
BtsCI GGATG 2 cut(s) 43, 582
BtsI GCAGTG 1 cut(s) 741
BtsIMutI CAGTG 2 cut(s) 19, 741
BveI ACCTGC 1 cut(s) 821
CaiI CAGNNNCTG 2 cut(s) 68, 176
Cfr13I GGNCC 1 cut(s) 189
Csp6I GTAC 3 cut(s) 55, 201, 716
CviAII CATG 2 cut(s) 397, 719
CviJI RGCY 9 cut(s) 65, 191, 245, 250, 293, 307, 478, 485, 551
CviKI_1 RGCY 9 cut(s) 65, 191, 245, 250, 293, 307, 478, 485, 551
CviQI GTAC 3 cut(s) 55, 201, 716
DdeI CTNAG 3 cut(s) 152, 246, 486
Eco57I CTGAAG 1 cut(s) 705
Eco91I GGTNACC 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 82
FaeI CATG 2 cut(s) 400, 722
FaqI GGGAC 1 cut(s) 485
FatI CATG 2 cut(s) 396, 718
FblI GTMKAC 1 cut(s) 680
Fnu4HI GCNGC 3 cut(s) 66, 177, 243
FokI GGATG 2 cut(s) 50, 589
Fsp4HI GCNGC 3 cut(s) 66, 177, 243
GluI GCNGC 3 cut(s) 66, 177, 243
HaeIII GGCC 2 cut(s) 191, 293
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 400, 722
HinfI GANTC 4 cut(s) 41, 259, 275, 650
HphI GGTGA 2 cut(s) 94, 707
Hpy166II GTNNAC 4 cut(s) 201, 390, 509, 681
Hpy188I TCNGA 2 cut(s) 153, 363
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 4 cut(s) 201, 390, 509, 681
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 4 cut(s) 11, 226, 378, 680
HpyCH4III ACNGT 1 cut(s) 715
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 8 cut(s) 101, 179, 206, 356, 437, 734, 803, 830
HpyF10VI GCNNNNNNNGC 1 cut(s) 836
HpyF3I CTNAG 3 cut(s) 152, 246, 486
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 400, 722
LmnI GCTCC 1 cut(s) 548
LpnPI CCDG 6 cut(s) 25, 268, 378, 727, 816, 840
Lsp1109I GCAGC 2 cut(s) 163, 254
LweI GCATC 1 cut(s) 163
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 3 cut(s) 58, 82, 744
MboII GAAGA 1 cut(s) 619
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 8 cut(s) 28, 119, 224, 265, 357, 376, 585, 635
MlyI GAGTC 2 cut(s) 268, 269
MnlI CCTC 6 cut(s) 180, 283, 398, 510, 566, 717
MseI TTAA 3 cut(s) 114, 375, 708
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 2 cut(s) 68, 245
Mva1269I GAATGC 3 cut(s) 103, 427, 646
MwoI GCNNNNNNNGC 1 cut(s) 836
NlaIII CATG 2 cut(s) 400, 722
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 2 cut(s) 58, 82
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PctI GAATGC 3 cut(s) 103, 427, 646
PfeI GAWTC 2 cut(s) 41, 650
PkrI GCNGC 3 cut(s) 67, 178, 244
PleI GAGTC 2 cut(s) 267, 269
PpsI GAGTC 2 cut(s) 267, 269
Ppu21I YACGTR 1 cut(s) 58
PspEI GGTNACC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 189
PstI CTGCAG 2 cut(s) 181, 832
PstNI CAGNNNCTG 2 cut(s) 68, 176
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 3 cut(s) 56, 202, 717
RsaNI GTAC 3 cut(s) 55, 201, 716
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 3 cut(s) 114, 375, 708
SatI GCNGC 3 cut(s) 66, 177, 243
Sau96I GGNCC 1 cut(s) 189
SbfI CCTGCAGG 1 cut(s) 832
SchI GAGTC 2 cut(s) 268, 269
SdaI CCTGCAGG 1 cut(s) 832
SduI GDGCHC 1 cut(s) 333
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 2 cut(s) 177, 828
SmiMI CAYNNNNRTG 1 cut(s) 395
Sse8387I CCTGCAGG 1 cut(s) 832
Sse9I AATT 8 cut(s) 28, 119, 224, 265, 357, 376, 585, 635
SsiI CCGC 1 cut(s) 66
SspI AATATT 1 cut(s) 567
TaaI ACNGT 1 cut(s) 715
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 48
TasI AATT 8 cut(s) 28, 119, 224, 265, 357, 376, 585, 635
TatI WGTACW 2 cut(s) 200, 715
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 2 cut(s) 41, 650
Tru1I TTAA 3 cut(s) 114, 375, 708
Tru9I TTAA 3 cut(s) 114, 375, 708
TscAI CASTG 2 cut(s) 19, 741
TseFI GTSAC 2 cut(s) 58, 82
TseI GCWGC 2 cut(s) 176, 242
Tsp45I GTSAC 2 cut(s) 58, 82
TspDTI ATGAA 3 cut(s) 110, 642, 806
TspRI CASTG 2 cut(s) 19, 741
XapI RAATTY 2 cut(s) 28, 585
XmiI GTMKAC 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.