Rmu_sc0001981.1_g000032

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001981.1
OG0018956
Physical Location & Seq
Reverse (-)
97895 .. 98548
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001981.1_g000032.1.cds

Sequence Viewer

Length: 654 bp
atggcgtcgtccagtgaaggagttggggaggattcatggaaagagctggaaaaggcaaagagggagattgaggaattaaagaaggagagagacaatttgcgtgagcaagtgacggaatttggtaatgtgaagacgcagctgaagcaagcacaagaagaggttggggatttgagatacaatattcagaatttggtgactcaactcacaaaagaccaaaaggacaacattgaggaattggaaacccgagtcgggaaatcggtggatgatgcaagcaaaggcagtcagcgtgtgactacctttgttgggattttgggaactcaactgaagcaagcacgaaaagacgttgaggatttgagaaacaatattcagggtgtgaatacccaactggctaatgcaaacagagacattaagaaattggagggggacttggagaatgagaaaactaagagtggcaagttgggaacagagaatggggaattgaacgccaaattgggtactgcagaagaactcaaagggaaattggacagggacttggccactgagaaaaccaaaagtggtgaattggagagacaattggccgaagcattgaagcacaatcaatggttgacatccaggtttgatgtattaattgtattctatgcattagttgtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.46

Weight (kDa)

5.29

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018956)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0336491
rosa_laevigata RLG00000029363 RLG00000029365 RLG00000029368
rosa_multiflora Rmu_sc0001981.1_g000032
rosa_roxburghii Rroxscaffold_4G00315580 Rroxscaffold_4G00315630
rosa_samantha Rh1AG146300 Rh1DG153200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 534, 576
AcsI RAATTY 2 cut(s) 116, 187
AcuI CTGAAG 2 cut(s) 161, 344
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 496
AfiI CCNNNNNNNGG 2 cut(s) 249, 303
AgsI TTSAA 2 cut(s) 481, 589
AjnI CCWGG 1 cut(s) 611
AjuI GAANNNNNNNTTGG 2 cut(s) 473, 505
AluBI AGCT 2 cut(s) 46, 139
AluI AGCT 2 cut(s) 46, 139
Alw26I GTCTC 3 cut(s) 84, 396, 562
Ama87I CYCGRG 1 cut(s) 243
AoxI GGCC 2 cut(s) 534, 576
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 2 cut(s) 116, 187
AseI ATTAAT 1 cut(s) 626
AsuHPI GGTGA 2 cut(s) 205, 569
AvaI CYCGRG 1 cut(s) 243
BalI TGGCCA 1 cut(s) 536
BbsI GAAGAC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 613
BcoDI GTCTC 3 cut(s) 84, 396, 562
BfmI CTRYAG 1 cut(s) 498
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 613
BmeT110I CYCGRG 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 613
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 303
Bse1I ACTGG 2 cut(s) 12, 390
BseBI CCWGG 1 cut(s) 613
BseGI GGATG 2 cut(s) 268, 608
BseLI CCNNNNNNNGG 2 cut(s) 249, 303
BseMII CTCAG 1 cut(s) 531
BseNI ACTGG 2 cut(s) 12, 390
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 2 cut(s) 536, 578
BsiHKCI CYCGRG 1 cut(s) 243
BslFI GGGAC 2 cut(s) 437, 542
BslI CCNNNNNNNGG 2 cut(s) 249, 303
BsmAI GTCTC 3 cut(s) 84, 396, 562
BsmFI GGGAC 2 cut(s) 437, 542
BsnI GGCC 2 cut(s) 536, 578
BsoBI CYCGRG 1 cut(s) 243
BspANI GGCC 2 cut(s) 536, 578
BspCNI CTCAG 1 cut(s) 532
BspMAI CTGCAG 1 cut(s) 502
BsrI ACTGG 2 cut(s) 12, 390
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 613
Bst6I CTCTTC 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 147, 271, 330
BstDEI CTNAG 2 cut(s) 444, 540
BstF5I GGATG 2 cut(s) 268, 608
BstMAI GTCTC 3 cut(s) 84, 396, 562
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 613
BstSCI CCNGG 1 cut(s) 611
BstSFI CTRYAG 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 137
BsuRI GGCC 2 cut(s) 536, 578
BtsCI GGATG 2 cut(s) 268, 608
BtsIMutI CAGTG 2 cut(s) 19, 537
Cac8I GCNNGC 3 cut(s) 147, 271, 330
CseI GACGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 495
CviAII CATG 1 cut(s) 36
CviJI RGCY 5 cut(s) 46, 139, 389, 536, 578
CviKI_1 RGCY 5 cut(s) 46, 139, 389, 536, 578
CviQI GTAC 1 cut(s) 495
DdeI CTNAG 2 cut(s) 444, 540
EaeI YGGCCR 2 cut(s) 534, 576
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco57I CTGAAG 2 cut(s) 161, 344
Eco88I CYCGRG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 611
EcoT22I ATGCAT 1 cut(s) 643
FaeI CATG 1 cut(s) 39
FaiI YATR 3 cut(s) 37, 639, 652
FaqI GGGAC 2 cut(s) 437, 542
FatI CATG 1 cut(s) 35
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 2 cut(s) 275, 595
Fsp4HI GCNGC 1 cut(s) 137
GluI GCNGC 1 cut(s) 137
HaeIII GGCC 2 cut(s) 536, 578
HgaI GACGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 39
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HinfI GANTC 3 cut(s) 32, 196, 246
HphI GGTGA 2 cut(s) 205, 569
Hpy166II GTNNAC 1 cut(s) 606
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 606
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 11, 76
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 4 cut(s) 269, 395, 500, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 2 cut(s) 444, 540
HpySE526I ACGT 1 cut(s) 342
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 39
LpnPI CCDG 7 cut(s) 25, 32, 353, 371, 511, 598, 625
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 256
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 3 cut(s) 109, 193, 289
MboII GAAGA 3 cut(s) 142, 167, 515
MfeI CAATTG 1 cut(s) 572
MlsI TGGCCA 1 cut(s) 536
MluNI TGGCCA 1 cut(s) 536
MlyI GAGTC 2 cut(s) 190, 255
MnlI CCTC 7 cut(s) 22, 54, 64, 151, 223, 340, 412
Mox20I TGGCCA 1 cut(s) 536
Mph1103I ATGCAT 1 cut(s) 643
MscI TGGCCA 1 cut(s) 536
MseI TTAA 3 cut(s) 77, 408, 626
Msp20I TGGCCA 1 cut(s) 536
MspA1I CMGCKG 1 cut(s) 139
MspR9I CCNGG 1 cut(s) 613
MunI CAATTG 1 cut(s) 572
MvaI CCWGG 1 cut(s) 613
MwoI GCNNNNNNNGC 1 cut(s) 142
NlaIII CATG 1 cut(s) 39
NmuCI GTSAC 3 cut(s) 109, 193, 289
NsiI ATGCAT 1 cut(s) 643
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 138
PleI GAGTC 2 cut(s) 190, 254
PpsI GAGTC 2 cut(s) 190, 254
PshBI ATTAAT 1 cut(s) 626
Psp6I CCWGG 1 cut(s) 611
PspGI CCWGG 1 cut(s) 611
PstI CTGCAG 1 cut(s) 502
PvuII CAGCTG 1 cut(s) 139
RsaI GTAC 1 cut(s) 496
RsaNI GTAC 1 cut(s) 495
SaqAI TTAA 3 cut(s) 77, 408, 626
SatI GCNGC 1 cut(s) 137
SchI GAGTC 2 cut(s) 190, 255
ScrFI CCNGG 1 cut(s) 613
SetI ASST 6 cut(s) 48, 141, 162, 299, 345, 617
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 498
SspI AATATT 2 cut(s) 181, 364
StyD4I CCNGG 1 cut(s) 611
TaiI ACGT 1 cut(s) 345
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 3 cut(s) 77, 408, 626
Tru9I TTAA 3 cut(s) 77, 408, 626
TscAI CASTG 2 cut(s) 19, 544
TseFI GTSAC 3 cut(s) 109, 193, 289
TseI GCWGC 1 cut(s) 136
Tsp45I GTSAC 3 cut(s) 109, 193, 289
TspDTI ATGAA 1 cut(s) 24
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 2 cut(s) 19, 544
VspI ATTAAT 1 cut(s) 626
XapI RAATTY 2 cut(s) 116, 187
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.