Rh1DG153200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
32041274 .. 32041684
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG153200.1

Sequence Viewer

Length: 411 bp
ATGGCGTTGTCCAGTGAAGGAGTTGAGAATTTGGTGGATGATGAAAGCACATTCTTTCAGATTGTGACAGTCGTTGTTGAGACTTTGGTGACCCAACTGATGAATGCATGCAAACACACTAATGAATTGGACAAGGACTTGGAGAATGAGATAACTCTGAGTGGCAAGTTGGGAACAGATGCTGTTGATTTGAGGGCCGAATTGGGTACTGTAGAAAAACGCAATGGGGAATTGGACAGGGACTTGGCAGCTGAGCTAACCAAGAGTTGCAATTTGACAACAAAGTTTGATGCTTTGACGACTCAATCTGGTGAGGCAAACGCACTCGTTGAGAAATTGAACATGAACTTAGCAGCTGAGCAAACCAAGAGTGAGAACTTGACAACAACGGTTGATAGATTGATGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.85

Weight (kDa)

4.34

Isoelectric Point (pI)

19.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018956)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 28
AfaI GTAC 1 cut(s) 208
AgsI TTSAA 1 cut(s) 340
AluBI AGCT 3 cut(s) 251, 256, 356
AluI AGCT 3 cut(s) 251, 256, 356
Alw26I GTCTC 1 cut(s) 74
AlwNI CAGNNNCTG 1 cut(s) 182
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 248, 353
ApoI RAATTY 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 195
AsuHPI GGTGA 2 cut(s) 100, 323
BbvI GCAGC 2 cut(s) 260, 365
BcoDI GTCTC 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 2 cut(s) 249, 354
BlpI GCTNAGC 2 cut(s) 252, 357
BlsI GCNGC 2 cut(s) 250, 355
BmgT120I GGNCC 1 cut(s) 195
BmsI GCATC 2 cut(s) 169, 280
Bpu1102I GCTNAGC 2 cut(s) 252, 357
Bse1I ACTGG 1 cut(s) 12
Bse3DI GCAATG 1 cut(s) 229
BseGI GGATG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 3 cut(s) 149, 243, 348
BseNI ACTGG 1 cut(s) 12
BseXI GCAGC 2 cut(s) 260, 365
BshFI GGCC 1 cut(s) 197
BslFI GGGAC 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 1 cut(s) 197
Bsp1720I GCTNAGC 2 cut(s) 252, 357
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 3 cut(s) 150, 244, 349
BsrDI GCAATG 1 cut(s) 229
BsrI ACTGG 1 cut(s) 12
Bst4CI ACNGT 3 cut(s) 70, 211, 391
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 4 cut(s) 158, 252, 349, 357
BstEII GGTNACC 1 cut(s) 88
BstF5I GGATG 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 111
BstPI GGTNACC 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 260, 365
BsuRI GGCC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 109
CaiI CAGNNNCTG 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 195
Csp6I GTAC 1 cut(s) 207
CviAII CATG 2 cut(s) 108, 343
CviJI RGCY 4 cut(s) 197, 251, 256, 356
CviKI_1 RGCY 4 cut(s) 197, 251, 256, 356
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 4 cut(s) 158, 252, 349, 357
Eco91I GGTNACC 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 88
EcoT22I ATGCAT 1 cut(s) 109
FaeI CATG 2 cut(s) 111, 346
FaiI YATR 2 cut(s) 109, 344
FaqI GGGAC 1 cut(s) 254
FatI CATG 2 cut(s) 107, 342
Fnu4HI GCNGC 2 cut(s) 249, 354
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 249, 354
GluI GCNGC 2 cut(s) 249, 354
HaeIII GGCC 1 cut(s) 197
Hin1II CATG 2 cut(s) 111, 346
HinfI GANTC 1 cut(s) 301
HphI GGTGA 2 cut(s) 100, 323
Hpy188I TCNGA 2 cut(s) 60, 159
HpyAV CCTTC 1 cut(s) 11
HpyCH4III ACNGT 3 cut(s) 70, 211, 391
HpyCH4V TGCA 3 cut(s) 107, 111, 270
HpyF3I CTNAG 4 cut(s) 158, 252, 349, 357
Hsp92II CATG 2 cut(s) 111, 346
LpnPI CCDG 3 cut(s) 25, 223, 294
Lsp1109I GCAGC 2 cut(s) 260, 365
LweI GCATC 2 cut(s) 169, 280
MaeIII GTNAC 2 cut(s) 64, 88
MluCI AATT 6 cut(s) 28, 125, 200, 230, 271, 335
MlyI GAGTC 1 cut(s) 295
MnlI CCTC 2 cut(s) 186, 307
Mph1103I ATGCAT 1 cut(s) 109
MseI TTAA 1 cut(s) 409
MslI CAYNNNNRTG 1 cut(s) 120
MspA1I CMGCKG 2 cut(s) 251, 356
Mva1269I GAATGC 1 cut(s) 109
NlaIII CATG 2 cut(s) 111, 346
NmuCI GTSAC 2 cut(s) 64, 88
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 1 cut(s) 111
PaeI GCATGC 1 cut(s) 111
PctI GAATGC 1 cut(s) 109
PkrI GCNGC 2 cut(s) 250, 355
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PspEI GGTNACC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 195
PstNI CAGNNNCTG 1 cut(s) 182
PvuII CAGCTG 2 cut(s) 251, 356
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 1 cut(s) 409
SatI GCNGC 2 cut(s) 249, 354
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 1 cut(s) 295
SetI ASST 3 cut(s) 253, 258, 358
SfaNI GCATC 2 cut(s) 169, 280
SfcI CTRYAG 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 120
SphI GCATGC 1 cut(s) 111
Sse9I AATT 6 cut(s) 28, 125, 200, 230, 271, 335
TaaI ACNGT 3 cut(s) 70, 211, 391
TasI AATT 6 cut(s) 28, 125, 200, 230, 271, 335
Tru1I TTAA 1 cut(s) 409
Tru9I TTAA 1 cut(s) 409
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 2 cut(s) 64, 88
TseI GCWGC 2 cut(s) 248, 353
Tsp45I GTSAC 2 cut(s) 64, 88
TspDTI ATGAA 4 cut(s) 57, 116, 138, 359
TspRI CASTG 1 cut(s) 19
XapI RAATTY 1 cut(s) 28
XceI RCATGY 1 cut(s) 111
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.