RLG00000029363

Ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018956
Physical Location & Seq
Reverse (-)
37133626 .. 37136179
2554 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029363

Sequence Viewer

Length: 1284 bp
ATGGCGTCGTCCAGTGAAGGAGTTGGGGAGGATTCATGGAAAGAGCTGGAAAAGGCAAAGAGAGAGATTGAGGAATTAAAGAAGGAGAGAGACAATTTGCGTGAGCAAGTGACAGAATTTGGGACTGTGAAGACGCAGATGAAGCAAGCACAACAAGAGGTTGGGGATTTGAGATACAACATTCAGAATTTGGTGACTCAACTCACAAAAGCCCAAAAGGACAACATTGAGGAATTGGAAACCCGAGTCGGGAAATCGGTGGATGATGCAAGCAAAGGCATTCAGCGTGTGACTACCTTTGTTGGGATTTTGGGGACTCAGCTGAAGCAAGCACGAAAAGACGTTGAGGATTTGAGAAACAATATTCAGGGTGTGAATACCCAACTGGCTAATGCAAACACAGGCATTAAGAAATTGGAGGGGGACTTGGAGAATGAGAAAACTAACAGTGGCAAGTTGGGAACAGAGAATGGGGAATTGAACGCCAAATTGGGTACTGCAGAAGAACTCAAAGGGAAATTGGACAGGGACTTGGCCACTGAGAAAACCAAGAGTGGTGAATTGGAGAGACAATTGGCCGAAGCATTGAAGCACAATCAAAGGTTGACATCCAGGATAGAGGCCAACAACCCCAATCCGTCAATCATCTGTAGTCTTGTGCACATTGTCATATATTTCTCTGTTGCAGCTATGATATGCTTTTCTACTTCTCATAATTTCACAGGCATGAAGAGTGGAAATAAATTTATGAATGTGCTATATTTTGTGGTAGTTACTACTCTTTCTGTTGGGTATGGCGACATATATCCCTGTAAGACAGGTTCAAAGTTGTTCACATGTTTATTGGTTGTCTTAGGGCCTCATATATCTAATTGTTTGACTGTTGTGCAAAGTTATATTTGGGGGAAGCTGAAAGCTAAGTTTCCCCACAATCTAAGTGAACTCCAGAGGAAAATAATCACTGGTATTTTGGCATTGCGAGCTGTTCTTATTTCAATATTTGGAGGGATGTGGGGAATCTATCTTTGTGAGAAGGGGAAGAATGTTGATAACATAGTTGGCTACAAATTGAATGCTACAGATTCCTTCTATTTGTCAATGATGTCACTGTCTACTGAAGGTTTTGGGGATTTCTCTTTTATAACGGTTGTTTCTAGTTCCCAAAGAAAAGGCAGGCATGCTCTGAGTTCCTTTCCTAAATTGATTGGCTCTGGTGAAGATCCTTTGACAACAGAAAAACACCTTGATGTTTTTAATAATAGCAGCGATGCTGCTGACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

428

Amino Acids

47.24

Weight (kDa)

8.06

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 229 - 286 1.6e-09 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018956)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0336491
rosa_laevigata RLG00000029363 RLG00000029365 RLG00000029368
rosa_multiflora Rmu_sc0001981.1_g000032
rosa_roxburghii Rroxscaffold_4G00315580 Rroxscaffold_4G00315630
rosa_samantha Rh1AG146300 Rh1DG153200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1142
AccI GTMKAC 1 cut(s) 1112
AclWI GGATC 1 cut(s) 1214
AcoI YGGCCR 2 cut(s) 534, 576
AcsI RAATTY 3 cut(s) 116, 187, 743
AcuI CTGAAG 2 cut(s) 344, 1137
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 496
AfiI CCNNNNNNNGG 2 cut(s) 249, 303
AflIII ACRYGT 1 cut(s) 836
AgsI TTSAA 5 cut(s) 481, 589, 825, 996, 1072
AjnI CCWGG 1 cut(s) 611
AjuI GAANNNNNNNTTGG 2 cut(s) 473, 505
AluBI AGCT 6 cut(s) 46, 322, 689, 910, 917, 983
AluI AGCT 6 cut(s) 46, 322, 689, 910, 917, 983
Alw21I GWGCWC 1 cut(s) 663
Alw26I GTCTC 2 cut(s) 84, 562
Alw44I GTGCAC 1 cut(s) 659
AlwI GGATC 1 cut(s) 1214
Ama87I CYCGRG 1 cut(s) 243
AoxI GGCC 4 cut(s) 534, 576, 621, 857
ApaLI GTGCAC 1 cut(s) 659
ApeKI GCWGC 3 cut(s) 686, 1263, 1271
ApoI RAATTY 3 cut(s) 116, 187, 743
AspS9I GGNCC 1 cut(s) 857
AsuHPI GGTGA 3 cut(s) 205, 569, 1226
AvaI CYCGRG 1 cut(s) 243
BaeGI GKGCMC 1 cut(s) 663
BalI TGGCCA 1 cut(s) 536
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 663
BbvI GCAGC 3 cut(s) 698, 1258, 1275
BciT130I CCWGG 1 cut(s) 613
BcoDI GTCTC 2 cut(s) 84, 562
BfaI CTAG 1 cut(s) 1155
BfmI CTRYAG 3 cut(s) 498, 649, 1077
BisI GCNGC 3 cut(s) 687, 1264, 1272
BlsI GCNGC 3 cut(s) 688, 1265, 1273
Bme1390I CCNGG 1 cut(s) 613
BmeT110I CYCGRG 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 857
BmrFI CCNGG 1 cut(s) 613
BmsI GCATC 2 cut(s) 256, 1258
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 1 cut(s) 929
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 303
Bse1I ACTGG 3 cut(s) 12, 390, 967
Bse3DI GCAATG 1 cut(s) 974
BseBI CCWGG 1 cut(s) 613
BseGI GGATG 3 cut(s) 268, 608, 1014
BseLI CCNNNNNNNGG 2 cut(s) 249, 303
BseMI GCAATG 1 cut(s) 974
BseMII CTCAG 3 cut(s) 332, 531, 1175
BseNI ACTGG 3 cut(s) 12, 390, 967
BseSI GKGCMC 1 cut(s) 663
BseXI GCAGC 3 cut(s) 698, 1258, 1275
BshFI GGCC 4 cut(s) 536, 578, 623, 859
BsiHKAI GWGCWC 1 cut(s) 663
BsiHKCI CYCGRG 1 cut(s) 243
BslFI GGGAC 4 cut(s) 136, 328, 437, 542
BslI CCNNNNNNNGG 2 cut(s) 249, 303
BsmAI GTCTC 2 cut(s) 84, 562
BsmFI GGGAC 4 cut(s) 136, 328, 437, 542
BsmI GAATGC 2 cut(s) 279, 1078
BsnI GGCC 4 cut(s) 536, 578, 623, 859
BsoBI CYCGRG 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 663
Bsp143I GATC 1 cut(s) 1219
BspANI GGCC 4 cut(s) 536, 578, 623, 859
BspCNI CTCAG 3 cut(s) 331, 532, 1176
BspMAI CTGCAG 1 cut(s) 502
BspPI GGATC 1 cut(s) 1214
BsrDI GCAATG 1 cut(s) 974
BsrI ACTGG 3 cut(s) 12, 390, 967
BssMI GATC 1 cut(s) 1219
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 613
Bst4CI ACNGT 5 cut(s) 127, 449, 883, 1110, 1147
Bst6I CTCTTC 1 cut(s) 725
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 6 cut(s) 147, 271, 330, 981, 1175, 1179
BstDEI CTNAG 6 cut(s) 318, 540, 853, 918, 935, 1184
BstF5I GGATG 3 cut(s) 268, 608, 1014
BstKTI GATC 1 cut(s) 1222
BstMAI GTCTC 2 cut(s) 84, 562
BstMBI GATC 1 cut(s) 1219
BstMWI GCNNNNNNNGC 2 cut(s) 142, 980
BstNI CCWGG 1 cut(s) 613
BstNSI RCATGY 2 cut(s) 840, 1181
BstSCI CCNGG 1 cut(s) 611
BstSFI CTRYAG 3 cut(s) 498, 649, 1077
BstSLI GKGCMC 1 cut(s) 663
BstV1I GCAGC 3 cut(s) 698, 1258, 1275
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 1219
BstYI RGATCY 1 cut(s) 1219
BsuRI GGCC 4 cut(s) 536, 578, 623, 859
BtsCI GGATG 3 cut(s) 268, 608, 1014
BtsIMutI CAGTG 5 cut(s) 19, 454, 537, 960, 1106
Cac8I GCNNGC 6 cut(s) 147, 271, 330, 981, 1175, 1179
Cfr13I GGNCC 1 cut(s) 857
CseI GACGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 495
CviAII CATG 4 cut(s) 36, 727, 837, 1178
CviQI GTAC 1 cut(s) 495
DdeI CTNAG 6 cut(s) 318, 540, 853, 918, 935, 1184
DpnI GATC 1 cut(s) 1221
DpnII GATC 1 cut(s) 1219
EaeI YGGCCR 2 cut(s) 534, 576
Eam1104I CTCTTC 1 cut(s) 725
EarI CTCTTC 1 cut(s) 725
Eco57I CTGAAG 2 cut(s) 344, 1137
Eco88I CYCGRG 1 cut(s) 243
EcoO109I RGGNCCY 1 cut(s) 857
EcoRII CCWGG 1 cut(s) 611
FaeI CATG 4 cut(s) 39, 730, 840, 1181
FaqI GGGAC 4 cut(s) 136, 328, 437, 542
FatI CATG 4 cut(s) 35, 726, 836, 1177
FblI GTMKAC 1 cut(s) 1112
Fnu4HI GCNGC 3 cut(s) 687, 1264, 1272
FokI GGATG 3 cut(s) 275, 595, 1021
Fsp4HI GCNGC 3 cut(s) 687, 1264, 1272
FspBI CTAG 1 cut(s) 1155
GluI GCNGC 3 cut(s) 687, 1264, 1272
GsuI CTGGAG 1 cut(s) 929
HaeIII GGCC 4 cut(s) 536, 578, 623, 859
HgaI GACGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 39, 730, 840, 1181
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HinfI GANTC 6 cut(s) 32, 196, 246, 316, 1017, 1082
HphI GGTGA 3 cut(s) 205, 569, 1226
Hpy166II GTNNAC 5 cut(s) 606, 661, 834, 941, 1113
Hpy188I TCNGA 2 cut(s) 186, 1185
Hpy188III TCNNGA 2 cut(s) 250, 946
Hpy8I GTNNAC 5 cut(s) 606, 661, 834, 941, 1113
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 5 cut(s) 11, 76, 1027, 1096, 1112
HpyCH4III ACNGT 5 cut(s) 127, 449, 883, 1110, 1147
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 6 cut(s) 269, 395, 500, 661, 686, 889
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 980
HpyF3I CTNAG 6 cut(s) 318, 540, 853, 918, 935, 1184
HpySE526I ACGT 1 cut(s) 342
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 39, 730, 840, 1181
Kzo9I GATC 1 cut(s) 1219
Lsp1109I GCAGC 3 cut(s) 698, 1258, 1275
LweI GCATC 2 cut(s) 256, 1258
MaeI CTAG 1 cut(s) 1155
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 5 cut(s) 109, 193, 289, 772, 1104
MalI GATC 1 cut(s) 1221
MboI GATC 1 cut(s) 1219
MboII GAAGA 5 cut(s) 142, 515, 742, 1051, 1229
MfeI CAATTG 1 cut(s) 572
MflI RGATCY 1 cut(s) 1219
MhlI GDGCHC 1 cut(s) 663
MlsI TGGCCA 1 cut(s) 536
MluNI TGGCCA 1 cut(s) 536
MlyI GAGTC 3 cut(s) 190, 255, 310
Mox20I TGGCCA 1 cut(s) 536
MscI TGGCCA 1 cut(s) 536
MseI TTAA 3 cut(s) 77, 408, 1254
MslI CAYNNNNRTG 2 cut(s) 725, 1245
Msp20I TGGCCA 1 cut(s) 536
MspA1I CMGCKG 1 cut(s) 322
MspR9I CCNGG 1 cut(s) 613
MunI CAATTG 1 cut(s) 572
Mva1269I GAATGC 2 cut(s) 279, 1078
MvaI CCWGG 1 cut(s) 613
MwoI GCNNNNNNNGC 2 cut(s) 142, 980
NdeII GATC 1 cut(s) 1219
NlaIII CATG 4 cut(s) 39, 730, 840, 1181
NmuCI GTSAC 4 cut(s) 109, 193, 289, 1104
NspI RCATGY 2 cut(s) 840, 1181
PaeI GCATGC 1 cut(s) 1181
PciI ACATGT 1 cut(s) 836
PctI GAATGC 2 cut(s) 279, 1078
PfeI GAWTC 3 cut(s) 32, 1017, 1082
PfoI TCCNGGA 1 cut(s) 611
PkrI GCNGC 3 cut(s) 688, 1265, 1273
PleI GAGTC 3 cut(s) 190, 254, 310
PpsI GAGTC 3 cut(s) 190, 254, 310
PscI ACATGT 1 cut(s) 836
PsiI TTATAA 1 cut(s) 1142
Psp6I CCWGG 1 cut(s) 611
PspGI CCWGG 1 cut(s) 611
PspPI GGNCC 1 cut(s) 857
PsrI GAACNNNNNNTAC 2 cut(s) 805, 837
PstI CTGCAG 1 cut(s) 502
PsuI RGATCY 1 cut(s) 1219
PvuII CAGCTG 1 cut(s) 322
RsaI GTAC 1 cut(s) 496
RsaNI GTAC 1 cut(s) 495
RseI CAYNNNNRTG 2 cut(s) 725, 1245
SaqAI TTAA 3 cut(s) 77, 408, 1254
SatI GCNGC 3 cut(s) 687, 1264, 1272
Sau3AI GATC 1 cut(s) 1219
Sau96I GGNCC 1 cut(s) 857
SchI GAGTC 3 cut(s) 190, 255, 310
ScrFI CCNGG 1 cut(s) 613
SduI GDGCHC 1 cut(s) 663
SfaNI GCATC 2 cut(s) 256, 1258
SfcI CTRYAG 3 cut(s) 498, 649, 1077
SmiMI CAYNNNNRTG 2 cut(s) 725, 1245
SphI GCATGC 1 cut(s) 1181
SspI AATATT 2 cut(s) 364, 999
SspMI CTAG 1 cut(s) 1155
StyD4I CCNGG 1 cut(s) 611
TaaI ACNGT 5 cut(s) 127, 449, 883, 1110, 1147
TaiI ACGT 1 cut(s) 345
TfiI GAWTC 3 cut(s) 32, 1017, 1082
Tru1I TTAA 3 cut(s) 77, 408, 1254
Tru9I TTAA 3 cut(s) 77, 408, 1254
TscAI CASTG 5 cut(s) 19, 454, 544, 967, 1113
TseFI GTSAC 4 cut(s) 109, 193, 289, 1104
TseI GCWGC 3 cut(s) 686, 1263, 1271
Tsp45I GTSAC 4 cut(s) 109, 193, 289, 1104
TspDTI ATGAA 4 cut(s) 24, 155, 743, 764
TspGWI ACGGA 1 cut(s) 627
TspRI CASTG 5 cut(s) 19, 454, 544, 967, 1113
VneI GTGCAC 1 cut(s) 659
XapI RAATTY 3 cut(s) 116, 187, 743
XceI RCATGY 2 cut(s) 840, 1181
XmiI GTMKAC 1 cut(s) 1112
XspI CTAG 1 cut(s) 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.