RchiOBHm_Chr1g0337311

Domain of unknown function (DUF4787)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0013556
Physical Location & Seq
Forward (+)
28978999 .. 28984988
5990 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 381 bp
ATGGTGAACCGAAATTCCTCATGTTGTTCTTCTCCACTCAGAATCCAAATCCTCTTAGTATTGTCGTTGCTATTCTCTCCCGCAGTTCTCGCCAAGTCCCGTCGCCCAATCAGTGACATTGAGACAAGGCAGAAGAAGACCCAATGTTATGCTGACATTGACAGTGGCTTGTGGGGATGGCAATGCAAGTCAACTATGATAGCAAAGGAGAATTGTGTTTTGAAATGCCTCTCTCCAACTTGTTATGAGCTCGTCTATGAGAGTGATCCGCTTGAAGAAGGAGAGAAAGATCTTCTTAGAGGACAAGAGTTCAAGTACTGTATGCATAAGTTATCTTTGGGGGAGAGCCTTGAGGGTATTAAGGGCTCCTTTAATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4787

Protein Analysis

126

Amino Acids

14.28

Weight (kDa)

7.49

Isoelectric Point (pI)

57.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4787 PF16029 39 - 107 1e-24 Domain of unknown function (DUF4787)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17610
fragaria_vesca FvH4_7g07210 FvH4_7g07210 FvH4_7g07210
malus_domestica MD02G1238400.v1.1 MD07G1078200.v1.1
prunus_persica Prupe.2G100000_v2.0.a1 Prupe.2G100000_v2.0.a1
pyrus_communis pycom02g20380 pycom07g06190
rosa_chinensis RchiOBHm_Chr1g0337311
rosa_multiflora Rmu_sc0006824.1_g000023 Rmu_sc0022984.1_g000002
rosa_roxburghii Rroxscaffold_4G00314550
rosa_rugosa Rorug01G0134300.1
rosa_samantha Rh1AG153400 Rh1CG144300
rosa_wichuraiana Rw1G012560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 81, 269
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 1 cut(s) 317
AgsI TTSAA 3 cut(s) 223, 275, 313
AloI GAACNNNNNNTCC 1 cut(s) 31
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 16
BanII GRGCYC 2 cut(s) 252, 368
BbsI GAAGAC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 252
BccI CCATC 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 116
BglII AGATCT 1 cut(s) 289
BmcAI AGTACT 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 367
BpiI GAAGAC 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 188
BseGI GGATG 1 cut(s) 182
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 252
BslFI GGGAC 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 252, 368
Bsp143I GATC 2 cut(s) 265, 289
BspACI CCGC 2 cut(s) 81, 269
BspCNI CTCAG 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 367
BspPI GGATC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 188
BssMI GATC 2 cut(s) 265, 289
Bst4CI ACNGT 2 cut(s) 164, 320
BstDEI CTNAG 3 cut(s) 38, 55, 296
BstF5I GGATG 1 cut(s) 182
BstKTI GATC 2 cut(s) 268, 292
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 2 cut(s) 265, 289
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BtsCI GGATG 1 cut(s) 182
BtsIMutI CAGTG 2 cut(s) 118, 169
Csp6I GTAC 1 cut(s) 316
CviAII CATG 1 cut(s) 21
CviJI RGCY 4 cut(s) 168, 250, 348, 366
CviKI_1 RGCY 4 cut(s) 168, 250, 348, 366
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 3 cut(s) 38, 55, 296
DpnI GATC 2 cut(s) 267, 291
DpnII GATC 2 cut(s) 265, 289
Ecl136II GAGCTC 1 cut(s) 250
Eco24I GRGCYC 2 cut(s) 252, 368
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 327
EcoT38I GRGCYC 2 cut(s) 252, 368
FaeI CATG 1 cut(s) 24
FaiI YATR 7 cut(s) 22, 150, 197, 246, 258, 323, 327
FalI AAGNNNNNCTT 3 cut(s) 279, 311, 353
FaqI GGGAC 1 cut(s) 82
FatI CATG 1 cut(s) 20
FauI CCCGC 1 cut(s) 88
FokI GGATG 1 cut(s) 189
FriOI GRGCYC 2 cut(s) 252, 368
Hin1II CATG 1 cut(s) 24
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HinfI GANTC 1 cut(s) 42
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 7, 192
Hpy188I TCNGA 1 cut(s) 41
Hpy8I GTNNAC 2 cut(s) 7, 192
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 2 cut(s) 164, 320
HpyCH4V TGCA 2 cut(s) 186, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 3 cut(s) 38, 55, 296
Hsp92II CATG 1 cut(s) 24
Kzo9I GATC 2 cut(s) 265, 289
LmnI GCTCC 1 cut(s) 371
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 267, 291
MboI GATC 2 cut(s) 265, 289
MboII GAAGA 5 cut(s) 21, 145, 148, 284, 287
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 2 cut(s) 252, 368
MluCI AATT 3 cut(s) 13, 211, 373
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 5 cut(s) 28, 62, 239, 293, 346
Mph1103I ATGCAT 1 cut(s) 327
MseI TTAA 3 cut(s) 360, 372, 379
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 2 cut(s) 265, 289
NlaIII CATG 1 cut(s) 24
NlaIV GGNNCC 1 cut(s) 367
NmuCI GTSAC 1 cut(s) 113
NsiI ATGCAT 1 cut(s) 327
PfeI GAWTC 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 367
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 3 cut(s) 360, 372, 379
Sau3AI GATC 2 cut(s) 265, 289
ScaI AGTACT 1 cut(s) 317
SduI GDGCHC 2 cut(s) 252, 368
SetI ASST 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 3 cut(s) 13, 211, 373
SsiI CCGC 2 cut(s) 81, 269
SstI GAGCTC 1 cut(s) 252
TaaI ACNGT 2 cut(s) 164, 320
TasI AATT 3 cut(s) 13, 211, 373
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 3 cut(s) 360, 372, 379
Tru9I TTAA 3 cut(s) 360, 372, 379
TscAI CASTG 2 cut(s) 118, 169
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspRI CASTG 2 cut(s) 118, 169
XapI RAATTY 1 cut(s) 13
ZrmI AGTACT 1 cut(s) 317
Zsp2I ATGCAT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.