Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0337501 RchiOBHm_Chr4g0404941 RchiOBHm_Chr5g0057011 |
| rosa_multiflora | Rmu_sc0006088.1_g000013 |
| rosa_roxburghii | Rroxscaffold_2G00133340 |
| rosa_samantha | Rh4AG092300 Rh4CG100800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 71 |
| AciI | CCGC | 3 cut(s) | 69, 93, 332 |
| AcoI | YGGCCR | 1 cut(s) | 374 |
| AcsI | RAATTY | 1 cut(s) | 135 |
| AgsI | TTSAA | 2 cut(s) | 44, 79 |
| AluBI | AGCT | 2 cut(s) | 300, 312 |
| AluI | AGCT | 2 cut(s) | 300, 312 |
| AoxI | GGCC | 2 cut(s) | 329, 374 |
| ApeKI | GCWGC | 1 cut(s) | 309 |
| ApoI | RAATTY | 1 cut(s) | 135 |
| BbvI | GCAGC | 1 cut(s) | 321 |
| BccI | CCATC | 2 cut(s) | 59, 146 |
| BceAI | ACGGC | 1 cut(s) | 34 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 298, 332 |
| BfaI | CTAG | 1 cut(s) | 382 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 337 |
| BisI | GCNGC | 3 cut(s) | 94, 310, 332 |
| BlsI | GCNGC | 3 cut(s) | 95, 311, 333 |
| BmsI | GCATC | 2 cut(s) | 163, 227 |
| Bsa29I | ATCGAT | 1 cut(s) | 150 |
| Bse1I | ACTGG | 1 cut(s) | 326 |
| BseCI | ATCGAT | 1 cut(s) | 150 |
| BseNI | ACTGG | 1 cut(s) | 326 |
| BseRI | GAGGAG | 1 cut(s) | 45 |
| BseXI | GCAGC | 1 cut(s) | 321 |
| BshFI | GGCC | 2 cut(s) | 331, 376 |
| BshVI | ATCGAT | 1 cut(s) | 150 |
| BsiSI | CCGG | 1 cut(s) | 373 |
| BsmI | GAATGC | 2 cut(s) | 271, 292 |
| BsnI | GGCC | 2 cut(s) | 331, 376 |
| Bsp143I | GATC | 1 cut(s) | 147 |
| BspACI | CCGC | 3 cut(s) | 69, 93, 332 |
| BspANI | GGCC | 2 cut(s) | 331, 376 |
| BspDI | ATCGAT | 1 cut(s) | 150 |
| BsrBI | CCGCTC | 1 cut(s) | 71 |
| BsrI | ACTGG | 1 cut(s) | 326 |
| BssMI | GATC | 1 cut(s) | 147 |
| Bst4CI | ACNGT | 1 cut(s) | 116 |
| Bst6I | CTCTTC | 1 cut(s) | 320 |
| BstKTI | GATC | 1 cut(s) | 150 |
| BstMBI | GATC | 1 cut(s) | 147 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 90, 306, 337 |
| BstV1I | GCAGC | 1 cut(s) | 321 |
| Bsu15I | ATCGAT | 1 cut(s) | 150 |
| BsuRI | GGCC | 2 cut(s) | 331, 376 |
| BsuTUI | ATCGAT | 1 cut(s) | 150 |
| BtsIMutI | CAGTG | 1 cut(s) | 108 |
| ClaI | ATCGAT | 1 cut(s) | 150 |
| CviJI | RGCY | 5 cut(s) | 208, 300, 312, 331, 376 |
| CviKI_1 | RGCY | 5 cut(s) | 208, 300, 312, 331, 376 |
| DpnI | GATC | 1 cut(s) | 149 |
| DpnII | GATC | 1 cut(s) | 147 |
| EaeI | YGGCCR | 1 cut(s) | 374 |
| Eam1104I | CTCTTC | 1 cut(s) | 320 |
| EarI | CTCTTC | 1 cut(s) | 320 |
| FaiI | YATR | 3 cut(s) | 188, 200, 278 |
| FauI | CCCGC | 1 cut(s) | 76 |
| Fnu4HI | GCNGC | 3 cut(s) | 94, 310, 332 |
| Fsp4HI | GCNGC | 3 cut(s) | 94, 310, 332 |
| FspBI | CTAG | 1 cut(s) | 382 |
| GluI | GCNGC | 3 cut(s) | 94, 310, 332 |
| HaeIII | GGCC | 2 cut(s) | 331, 376 |
| HapII | CCGG | 1 cut(s) | 373 |
| HinfI | GANTC | 4 cut(s) | 178, 211, 361, 369 |
| HpaII | CCGG | 1 cut(s) | 373 |
| Hpy166II | GTNNAC | 1 cut(s) | 16 |
| Hpy188I | TCNGA | 2 cut(s) | 133, 366 |
| Hpy8I | GTNNAC | 1 cut(s) | 16 |
| Hpy99I | CGWCG | 1 cut(s) | 345 |
| HpyCH4III | ACNGT | 1 cut(s) | 116 |
| HpyCH4V | TGCA | 2 cut(s) | 57, 271 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 90, 306, 337 |
| Kzo9I | GATC | 1 cut(s) | 147 |
| LmnI | GCTCC | 1 cut(s) | 76 |
| LpnPI | CCDG | 5 cut(s) | 40, 110, 200, 274, 307 |
| Lsp1109I | GCAGC | 1 cut(s) | 321 |
| LweI | GCATC | 2 cut(s) | 163, 227 |
| MaeI | CTAG | 1 cut(s) | 382 |
| MalI | GATC | 1 cut(s) | 149 |
| MbiI | CCGCTC | 1 cut(s) | 71 |
| MboI | GATC | 1 cut(s) | 147 |
| MboII | GAAGA | 1 cut(s) | 337 |
| MfeI | CAATTG | 1 cut(s) | 79 |
| MluCI | AATT | 4 cut(s) | 79, 120, 135, 165 |
| MlyI | GAGTC | 2 cut(s) | 220, 370 |
| MmeI | TCCRAC | 1 cut(s) | 344 |
| MnlI | CCTC | 3 cut(s) | 23, 299, 321 |
| MseI | TTAA | 2 cut(s) | 119, 164 |
| MspA1I | CMGCKG | 1 cut(s) | 93 |
| MspI | CCGG | 1 cut(s) | 373 |
| MunI | CAATTG | 1 cut(s) | 79 |
| Mva1269I | GAATGC | 2 cut(s) | 271, 292 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 90, 306, 337 |
| NdeII | GATC | 1 cut(s) | 147 |
| NmeAIII | GCCGAG | 1 cut(s) | 234 |
| PctI | GAATGC | 2 cut(s) | 271, 292 |
| PfeI | GAWTC | 2 cut(s) | 178, 369 |
| PkrI | GCNGC | 3 cut(s) | 95, 311, 333 |
| PleI | GAGTC | 2 cut(s) | 219, 369 |
| PpsI | GAGTC | 2 cut(s) | 219, 369 |
| SaqAI | TTAA | 2 cut(s) | 119, 164 |
| SatI | GCNGC | 3 cut(s) | 94, 310, 332 |
| Sau3AI | GATC | 1 cut(s) | 147 |
| SchI | GAGTC | 2 cut(s) | 220, 370 |
| SetI | ASST | 2 cut(s) | 302, 314 |
| SfaNI | GCATC | 2 cut(s) | 163, 227 |
| Sse9I | AATT | 4 cut(s) | 79, 120, 135, 165 |
| SsiI | CCGC | 3 cut(s) | 69, 93, 332 |
| SspMI | CTAG | 1 cut(s) | 382 |
| TaaI | ACNGT | 1 cut(s) | 116 |
| TaqI | TCGA | 3 cut(s) | 150, 296, 318 |
| TasI | AATT | 4 cut(s) | 79, 120, 135, 165 |
| TauI | GCSGC | 2 cut(s) | 96, 334 |
| TfiI | GAWTC | 2 cut(s) | 178, 369 |
| Tru1I | TTAA | 2 cut(s) | 119, 164 |
| Tru9I | TTAA | 2 cut(s) | 119, 164 |
| TscAI | CASTG | 1 cut(s) | 115 |
| TseI | GCWGC | 1 cut(s) | 309 |
| TspDTI | ATGAA | 1 cut(s) | 203 |
| TspRI | CASTG | 1 cut(s) | 115 |
| XapI | RAATTY | 1 cut(s) | 135 |
| XspI | CTAG | 1 cut(s) | 382 |