Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0337501 RchiOBHm_Chr4g0404941 RchiOBHm_Chr5g0057011 |
| rosa_multiflora | Rmu_sc0006088.1_g000013 |
| rosa_roxburghii | Rroxscaffold_2G00133340 |
| rosa_samantha | Rh4AG092300 Rh4CG100800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 93 |
| AclI | AACGTT | 1 cut(s) | 114 |
| AclWI | GGATC | 1 cut(s) | 131 |
| AcsI | RAATTY | 1 cut(s) | 122 |
| AgsI | TTSAA | 3 cut(s) | 44, 79, 128 |
| Alw26I | GTCTC | 1 cut(s) | 54 |
| AlwI | GGATC | 1 cut(s) | 131 |
| AoxI | GGCC | 1 cut(s) | 187 |
| ApoI | RAATTY | 1 cut(s) | 122 |
| AspS9I | GGNCC | 1 cut(s) | 154 |
| AsuHPI | GGTGA | 2 cut(s) | 100, 107 |
| AvaII | GGWCC | 1 cut(s) | 154 |
| BccI | CCATC | 2 cut(s) | 59, 145 |
| BceAI | ACGGC | 1 cut(s) | 34 |
| BcoDI | GTCTC | 1 cut(s) | 54 |
| BfmI | CTRYAG | 1 cut(s) | 55 |
| Bme18I | GGWCC | 1 cut(s) | 154 |
| BmgT120I | GGNCC | 1 cut(s) | 154 |
| BmiI | GGNNCC | 1 cut(s) | 156 |
| BsaWI | WCCGGW | 1 cut(s) | 101 |
| Bse1I | ACTGG | 1 cut(s) | 170 |
| BseNI | ACTGG | 1 cut(s) | 170 |
| BshFI | GGCC | 1 cut(s) | 189 |
| BsiSI | CCGG | 1 cut(s) | 102 |
| BsmAI | GTCTC | 1 cut(s) | 54 |
| BsnI | GGCC | 1 cut(s) | 189 |
| Bsp143I | GATC | 1 cut(s) | 136 |
| BspACI | CCGC | 1 cut(s) | 93 |
| BspANI | GGCC | 1 cut(s) | 189 |
| BspLI | GGNNCC | 1 cut(s) | 156 |
| BspMAI | CTGCAG | 1 cut(s) | 59 |
| BspPI | GGATC | 1 cut(s) | 131 |
| BsrI | ACTGG | 1 cut(s) | 170 |
| BssMI | GATC | 1 cut(s) | 136 |
| Bst6I | CTCTTC | 1 cut(s) | 70 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 191 |
| BstC8I | GCNNGC | 1 cut(s) | 187 |
| BstKTI | GATC | 1 cut(s) | 139 |
| BstMAI | GTCTC | 1 cut(s) | 54 |
| BstMBI | GATC | 1 cut(s) | 136 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 90, 182, 191 |
| BstSFI | CTRYAG | 1 cut(s) | 55 |
| BsuRI | GGCC | 1 cut(s) | 189 |
| Cac8I | GCNNGC | 1 cut(s) | 187 |
| Cfr13I | GGNCC | 1 cut(s) | 154 |
| CviAII | CATG | 1 cut(s) | 195 |
| CviJI | RGCY | 3 cut(s) | 84, 176, 189 |
| CviKI_1 | RGCY | 3 cut(s) | 84, 176, 189 |
| DpnI | GATC | 1 cut(s) | 138 |
| DpnII | GATC | 1 cut(s) | 136 |
| Eam1104I | CTCTTC | 1 cut(s) | 70 |
| EarI | CTCTTC | 1 cut(s) | 70 |
| Eco147I | AGGCCT | 1 cut(s) | 189 |
| Eco47I | GGWCC | 1 cut(s) | 154 |
| FaeI | CATG | 1 cut(s) | 198 |
| FaiI | YATR | 1 cut(s) | 196 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 24, 56 |
| FatI | CATG | 1 cut(s) | 194 |
| HaeIII | GGCC | 1 cut(s) | 189 |
| HapII | CCGG | 1 cut(s) | 102 |
| Hin1II | CATG | 1 cut(s) | 198 |
| HinfI | GANTC | 2 cut(s) | 62, 105 |
| HpaII | CCGG | 1 cut(s) | 102 |
| HphI | GGTGA | 2 cut(s) | 100, 107 |
| Hpy166II | GTNNAC | 1 cut(s) | 16 |
| Hpy188I | TCNGA | 1 cut(s) | 136 |
| Hpy8I | GTNNAC | 1 cut(s) | 16 |
| HpyCH4IV | ACGT | 1 cut(s) | 114 |
| HpyCH4V | TGCA | 3 cut(s) | 57, 185, 194 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 90, 182, 191 |
| HpySE526I | ACGT | 1 cut(s) | 114 |
| Hsp92II | CATG | 1 cut(s) | 198 |
| Kzo9I | GATC | 1 cut(s) | 136 |
| LmnI | GCTCC | 1 cut(s) | 76 |
| LpnPI | CCDG | 4 cut(s) | 40, 115, 151, 171 |
| MaeII | ACGT | 1 cut(s) | 114 |
| MaeIII | GTNAC | 1 cut(s) | 95 |
| MalI | GATC | 1 cut(s) | 138 |
| MboI | GATC | 1 cut(s) | 136 |
| MboII | GAAGA | 1 cut(s) | 57 |
| MluCI | AATT | 1 cut(s) | 122 |
| MlyI | GAGTC | 2 cut(s) | 56, 99 |
| MnlI | CCTC | 1 cut(s) | 168 |
| MspI | CCGG | 1 cut(s) | 102 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 90, 182, 191 |
| NdeII | GATC | 1 cut(s) | 136 |
| NlaIII | CATG | 1 cut(s) | 198 |
| NlaIV | GGNNCC | 1 cut(s) | 156 |
| NmuCI | GTSAC | 1 cut(s) | 95 |
| PceI | AGGCCT | 1 cut(s) | 189 |
| PleI | GAGTC | 2 cut(s) | 56, 99 |
| PpsI | GAGTC | 2 cut(s) | 56, 99 |
| Psp1406I | AACGTT | 1 cut(s) | 114 |
| PspN4I | GGNNCC | 1 cut(s) | 156 |
| PspPI | GGNCC | 1 cut(s) | 154 |
| PstI | CTGCAG | 1 cut(s) | 59 |
| Sau3AI | GATC | 1 cut(s) | 136 |
| Sau96I | GGNCC | 1 cut(s) | 154 |
| SchI | GAGTC | 2 cut(s) | 56, 99 |
| SetI | ASST | 1 cut(s) | 117 |
| SfcI | CTRYAG | 1 cut(s) | 55 |
| SgeI | CNNG | 4 cut(s) | 39, 114, 153, 178 |
| SinI | GGWCC | 1 cut(s) | 154 |
| Sse9I | AATT | 1 cut(s) | 122 |
| SseBI | AGGCCT | 1 cut(s) | 189 |
| SsiI | CCGC | 1 cut(s) | 93 |
| StuI | AGGCCT | 1 cut(s) | 189 |
| TaiI | ACGT | 1 cut(s) | 117 |
| TasI | AATT | 1 cut(s) | 122 |
| TseFI | GTSAC | 1 cut(s) | 95 |
| Tsp45I | GTSAC | 1 cut(s) | 95 |
| VpaK11BI | GGWCC | 1 cut(s) | 154 |
| XapI | RAATTY | 1 cut(s) | 122 |