Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0337501 RchiOBHm_Chr4g0404941 RchiOBHm_Chr5g0057011 |
| rosa_multiflora | Rmu_sc0006088.1_g000013 |
| rosa_roxburghii | Rroxscaffold_2G00133340 |
| rosa_samantha | Rh4AG092300 Rh4CG100800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 287 |
| AciI | CCGC | 1 cut(s) | 93 |
| AclWI | GGATC | 1 cut(s) | 242 |
| AcsI | RAATTY | 2 cut(s) | 135, 233 |
| AgsI | TTSAA | 5 cut(s) | 44, 79, 133, 190, 239 |
| AluBI | AGCT | 2 cut(s) | 71, 291 |
| AluI | AGCT | 2 cut(s) | 71, 291 |
| Alw26I | GTCTC | 1 cut(s) | 54 |
| AlwI | GGATC | 1 cut(s) | 242 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 302 |
| ApoI | RAATTY | 2 cut(s) | 135, 233 |
| AspS9I | GGNCC | 2 cut(s) | 265, 299 |
| AvaII | GGWCC | 2 cut(s) | 265, 299 |
| BccI | CCATC | 3 cut(s) | 59, 146, 256 |
| BceAI | ACGGC | 1 cut(s) | 34 |
| BcoDI | GTCTC | 1 cut(s) | 54 |
| BfmI | CTRYAG | 1 cut(s) | 55 |
| BfuAI | ACCTGC | 1 cut(s) | 287 |
| BisI | GCNGC | 1 cut(s) | 94 |
| BlsI | GCNGC | 1 cut(s) | 95 |
| Bme18I | GGWCC | 2 cut(s) | 265, 299 |
| BmgT120I | GGNCC | 2 cut(s) | 265, 299 |
| BmiI | GGNNCC | 1 cut(s) | 267 |
| BmsI | GCATC | 2 cut(s) | 163, 227 |
| BpmI | CTGGAG | 1 cut(s) | 51 |
| Bsa29I | ATCGAT | 1 cut(s) | 150 |
| Bse1I | ACTGG | 1 cut(s) | 281 |
| BseCI | ATCGAT | 1 cut(s) | 150 |
| BseNI | ACTGG | 1 cut(s) | 281 |
| BseRI | GAGGAG | 1 cut(s) | 45 |
| BshVI | ATCGAT | 1 cut(s) | 150 |
| BsmAI | GTCTC | 1 cut(s) | 54 |
| Bsp143I | GATC | 2 cut(s) | 147, 247 |
| BspACI | CCGC | 1 cut(s) | 93 |
| BspDI | ATCGAT | 1 cut(s) | 150 |
| BspLI | GGNNCC | 1 cut(s) | 267 |
| BspMAI | CTGCAG | 1 cut(s) | 59 |
| BspMI | ACCTGC | 1 cut(s) | 287 |
| BspPI | GGATC | 1 cut(s) | 242 |
| BsrI | ACTGG | 1 cut(s) | 281 |
| BssMI | GATC | 2 cut(s) | 147, 247 |
| Bst4CI | ACNGT | 1 cut(s) | 116 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 302 |
| BstC8I | GCNNGC | 1 cut(s) | 289 |
| BstKTI | GATC | 2 cut(s) | 150, 250 |
| BstMAI | GTCTC | 1 cut(s) | 54 |
| BstMBI | GATC | 2 cut(s) | 147, 247 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 90, 293, 302 |
| BstSFI | CTRYAG | 1 cut(s) | 55 |
| Bsu15I | ATCGAT | 1 cut(s) | 150 |
| BsuTUI | ATCGAT | 1 cut(s) | 150 |
| BtsIMutI | CAGTG | 1 cut(s) | 108 |
| BveI | ACCTGC | 1 cut(s) | 287 |
| Cac8I | GCNNGC | 1 cut(s) | 289 |
| CaiI | CAGNNNCTG | 1 cut(s) | 302 |
| Cfr13I | GGNCC | 2 cut(s) | 265, 299 |
| ClaI | ATCGAT | 1 cut(s) | 150 |
| CviJI | RGCY | 4 cut(s) | 71, 208, 287, 291 |
| CviKI_1 | RGCY | 4 cut(s) | 71, 208, 287, 291 |
| DpnI | GATC | 2 cut(s) | 149, 249 |
| DpnII | GATC | 2 cut(s) | 147, 247 |
| Eco47I | GGWCC | 2 cut(s) | 265, 299 |
| EcoO109I | RGGNCCY | 1 cut(s) | 299 |
| FaiI | YATR | 1 cut(s) | 200 |
| Fnu4HI | GCNGC | 1 cut(s) | 94 |
| Fsp4HI | GCNGC | 1 cut(s) | 94 |
| GluI | GCNGC | 1 cut(s) | 94 |
| GsuI | CTGGAG | 1 cut(s) | 51 |
| HinfI | GANTC | 3 cut(s) | 62, 105, 211 |
| Hpy166II | GTNNAC | 1 cut(s) | 16 |
| Hpy188I | TCNGA | 1 cut(s) | 247 |
| Hpy8I | GTNNAC | 1 cut(s) | 16 |
| HpyCH4III | ACNGT | 1 cut(s) | 116 |
| HpyCH4V | TGCA | 3 cut(s) | 57, 296, 305 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 90, 293, 302 |
| Kzo9I | GATC | 2 cut(s) | 147, 247 |
| LmnI | GCTCC | 1 cut(s) | 76 |
| LpnPI | CCDG | 8 cut(s) | 40, 81, 110, 115, 200, 262, 282, 301 |
| LweI | GCATC | 2 cut(s) | 163, 227 |
| MalI | GATC | 2 cut(s) | 149, 249 |
| MboI | GATC | 2 cut(s) | 147, 247 |
| MluCI | AATT | 4 cut(s) | 120, 135, 165, 233 |
| MlyI | GAGTC | 3 cut(s) | 56, 99, 220 |
| MnlI | CCTC | 2 cut(s) | 23, 279 |
| MseI | TTAA | 2 cut(s) | 119, 164 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 90, 293, 302 |
| NdeII | GATC | 2 cut(s) | 147, 247 |
| NlaIV | GGNNCC | 1 cut(s) | 267 |
| NmeAIII | GCCGAG | 1 cut(s) | 234 |
| PkrI | GCNGC | 1 cut(s) | 95 |
| PleI | GAGTC | 3 cut(s) | 56, 99, 219 |
| PpsI | GAGTC | 3 cut(s) | 56, 99, 219 |
| PpuMI | RGGWCCY | 1 cut(s) | 299 |
| Psp5II | RGGWCCY | 1 cut(s) | 299 |
| PspN4I | GGNNCC | 1 cut(s) | 267 |
| PspPI | GGNCC | 2 cut(s) | 265, 299 |
| PspPPI | RGGWCCY | 1 cut(s) | 299 |
| PstI | CTGCAG | 1 cut(s) | 59 |
| PstNI | CAGNNNCTG | 1 cut(s) | 302 |
| SaqAI | TTAA | 2 cut(s) | 119, 164 |
| SatI | GCNGC | 1 cut(s) | 94 |
| Sau3AI | GATC | 2 cut(s) | 147, 247 |
| Sau96I | GGNCC | 2 cut(s) | 265, 299 |
| SchI | GAGTC | 3 cut(s) | 56, 99, 220 |
| SetI | ASST | 3 cut(s) | 73, 293, 301 |
| SfaNI | GCATC | 2 cut(s) | 163, 227 |
| SfcI | CTRYAG | 1 cut(s) | 55 |
| SgeI | CNNG | 9 cut(s) | 39, 80, 114, 137, 222, 227, 264, 289, 300 |
| SinI | GGWCC | 2 cut(s) | 265, 299 |
| Sse9I | AATT | 4 cut(s) | 120, 135, 165, 233 |
| SsiI | CCGC | 1 cut(s) | 93 |
| TaaI | ACNGT | 1 cut(s) | 116 |
| TaqI | TCGA | 1 cut(s) | 150 |
| TasI | AATT | 4 cut(s) | 120, 135, 165, 233 |
| TauI | GCSGC | 1 cut(s) | 96 |
| Tru1I | TTAA | 2 cut(s) | 119, 164 |
| Tru9I | TTAA | 2 cut(s) | 119, 164 |
| TscAI | CASTG | 1 cut(s) | 115 |
| TspRI | CASTG | 1 cut(s) | 115 |
| VpaK11BI | GGWCC | 2 cut(s) | 265, 299 |
| XapI | RAATTY | 2 cut(s) | 135, 233 |