Rmu_sc0006088.1_g000013

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006088.1
OG0019844
Physical Location & Seq
Forward (+)
54410 .. 55440
1031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006088.1_g000013.1.cds

Sequence Viewer

Length: 573 bp
atgaatcactatctattcattgctattgttcttgatccgcgtcataaacttgagaaagttgttgactattttgagattcttgatgatggtgatacgaatgaaaatgtggaagctaacacaaagactgtgaatgatctcttgtatgacctttacaaggtgtatgaggaagagggaagggaaagtggtgttggtgaggttgtgggttctcaagtatcaagtgaggggacatctagttcatgtaagggtctaacggagttagaaaagagattgaaagagaaggagcaaaggagaagagcaatgaaagcagggatccccgatcccaatttcccatatgtctttgcaagggaggtggccagagcggtccgagtcgcggcggaggacgaggaagtggtggtggaaagacggtggcttttgcagattgtgatcgatggttggttagtttacggcgaccccagaagagttctgcttcaacacaccatctgcagagactcttctgttcctttcaactgcctttactgcggcgacaccggactcaccaacgtgaggtttaattctgagttcagaaatttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT

Protein Analysis

190

Amino Acids

21.83

Weight (kDa)

5.04

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019844)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0337501 RchiOBHm_Chr4g0404941 RchiOBHm_Chr5g0057011
rosa_multiflora Rmu_sc0006088.1_g000013
rosa_roxburghii Rroxscaffold_2G00133340
rosa_samantha Rh4AG092300 Rh4CG100800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 359
AccII CGCG 2 cut(s) 40, 371
AciI CCGC 5 cut(s) 38, 359, 371, 374, 519
AclWI GGATC 4 cut(s) 29, 304, 311, 317
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 1 cut(s) 565
AfiI CCNNNNNNNGG 3 cut(s) 154, 370, 543
AgsI TTSAA 3 cut(s) 271, 470, 505
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AleI CACNNNNGTG 1 cut(s) 539
AloI GAACNNNNNNTCC 2 cut(s) 217, 249
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 480
AlwI GGATC 4 cut(s) 29, 304, 311, 317
AoxI GGCC 1 cut(s) 351
ApoI RAATTY 1 cut(s) 565
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 3 cut(s) 101, 203, 526
AvaII GGWCC 1 cut(s) 361
BalI TGGCCA 1 cut(s) 353
BamHI GGATCC 1 cut(s) 309
BccI CCATC 3 cut(s) 80, 422, 485
BceAI ACGGC 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 480
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 481
BisI GCNGC 2 cut(s) 372, 520
BlsI GCNGC 2 cut(s) 373, 521
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 311
BpuEI CTTGAG 2 cut(s) 71, 192
Bsa29I ATCGAT 1 cut(s) 426
BsaBI GATNNNNATC 1 cut(s) 422
BsaWI WCCGGW 1 cut(s) 527
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 370, 543
Bse3DI GCAATG 2 cut(s) 18, 303
Bse8I GATNNNNATC 1 cut(s) 422
BseCI ATCGAT 1 cut(s) 426
BseJI GATNNNNATC 1 cut(s) 422
BseLI CCNNNNNNNGG 3 cut(s) 154, 370, 543
BseMI GCAATG 2 cut(s) 18, 303
BseMII CTCAG 1 cut(s) 546
Bsh1236I CGCG 2 cut(s) 40, 371
BshFI GGCC 1 cut(s) 353
BshVI ATCGAT 1 cut(s) 426
BsiSI CCGG 1 cut(s) 528
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 3 cut(s) 154, 370, 543
BsmAI GTCTC 1 cut(s) 480
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 1 cut(s) 353
Bsp143I GATC 5 cut(s) 34, 133, 309, 316, 423
BspACI CCGC 5 cut(s) 38, 359, 371, 374, 519
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 547
BspDI ATCGAT 1 cut(s) 426
BspFNI CGCG 2 cut(s) 40, 371
BspLI GGNNCC 1 cut(s) 311
BspMAI CTGCAG 1 cut(s) 485
BspPI GGATC 4 cut(s) 29, 304, 311, 317
BspQI GCTCTTC 1 cut(s) 286
BsrBI CCGCTC 1 cut(s) 359
BsrDI GCAATG 2 cut(s) 18, 303
BssMI GATC 5 cut(s) 34, 133, 309, 316, 423
Bst4CI ACNGT 2 cut(s) 127, 405
Bst6I CTCTTC 4 cut(s) 162, 286, 451, 496
BstDEI CTNAG 1 cut(s) 555
BstENI CCTNNNNNAGG 1 cut(s) 152
BstFNI CGCG 2 cut(s) 40, 371
BstKTI GATC 5 cut(s) 37, 136, 312, 319, 426
BstMAI GTCTC 1 cut(s) 480
BstMBI GATC 5 cut(s) 34, 133, 309, 316, 423
BstMWI GCNNNNNNNGC 2 cut(s) 302, 516
BstSFI CTRYAG 1 cut(s) 481
BstUI CGCG 2 cut(s) 40, 371
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
Bsu15I ATCGAT 1 cut(s) 426
BsuRI GGCC 1 cut(s) 353
BsuTUI ATCGAT 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 361
ClaI ATCGAT 1 cut(s) 426
CpoI CGGWCCG 1 cut(s) 361
CseI GACGC 1 cut(s) 29
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CspI CGGWCCG 1 cut(s) 361
CviAII CATG 1 cut(s) 237
CviJI RGCY 3 cut(s) 113, 353, 409
CviKI_1 RGCY 3 cut(s) 113, 353, 409
DdeI CTNAG 1 cut(s) 555
DpnI GATC 5 cut(s) 36, 135, 311, 318, 425
DpnII GATC 5 cut(s) 34, 133, 309, 316, 423
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 4 cut(s) 162, 286, 451, 496
EarI CTCTTC 4 cut(s) 162, 286, 451, 496
EciI GGCGGA 1 cut(s) 389
Eco47I GGWCC 1 cut(s) 361
EcoNI CCTNNNNNAGG 1 cut(s) 152
FaeI CATG 1 cut(s) 240
FaiI YATR 6 cut(s) 45, 144, 162, 238, 331, 333
FaqI GGGAC 1 cut(s) 238
FatI CATG 1 cut(s) 236
FauNDI CATATG 1 cut(s) 331
Fnu4HI GCNGC 2 cut(s) 372, 520
Fsp4HI GCNGC 2 cut(s) 372, 520
FspBI CTAG 1 cut(s) 231
GluI GCNGC 2 cut(s) 372, 520
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 528
HgaI GACGC 1 cut(s) 29
Hin1II CATG 1 cut(s) 240
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 5 cut(s) 4, 76, 366, 488, 531
HpaII CCGG 1 cut(s) 528
HphI GGTGA 3 cut(s) 101, 203, 526
Hpy166II GTNNAC 2 cut(s) 64, 442
Hpy188I TCNGA 3 cut(s) 365, 556, 563
Hpy188III TCNNGA 2 cut(s) 32, 80
Hpy8I GTNNAC 2 cut(s) 64, 442
HpyAV CCTTC 2 cut(s) 168, 271
HpyCH4III ACNGT 2 cut(s) 127, 405
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 3 cut(s) 341, 415, 483
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 516
HpyF3I CTNAG 1 cut(s) 555
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 1 cut(s) 240
Kzo9I GATC 5 cut(s) 34, 133, 309, 316, 423
LguI GCTCTTC 1 cut(s) 286
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 4 cut(s) 291, 367, 466, 541
MaeI CTAG 1 cut(s) 231
MaeII ACGT 1 cut(s) 540
MalI GATC 5 cut(s) 36, 135, 311, 318, 425
MbiI CCGCTC 1 cut(s) 359
MboI GATC 5 cut(s) 34, 133, 309, 316, 423
MboII GAAGA 4 cut(s) 179, 303, 468, 483
MflI RGATCY 1 cut(s) 309
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 3 cut(s) 322, 550, 565
MluNI TGGCCA 1 cut(s) 353
MlyI GAGTC 3 cut(s) 375, 482, 525
MnlI CCTC 8 cut(s) 157, 163, 187, 214, 340, 370, 376, 537
Mox20I TGGCCA 1 cut(s) 353
MscI TGGCCA 1 cut(s) 353
MseI TTAA 1 cut(s) 549
MslI CAYNNNNRTG 1 cut(s) 539
Msp20I TGGCCA 1 cut(s) 353
MspI CCGG 1 cut(s) 528
MvnI CGCG 2 cut(s) 40, 371
MwoI GCNNNNNNNGC 2 cut(s) 302, 516
NdeI CATATG 1 cut(s) 331
NdeII GATC 5 cut(s) 34, 133, 309, 316, 423
NlaIII CATG 1 cut(s) 240
NlaIV GGNNCC 1 cut(s) 311
OliI CACNNNNGTG 1 cut(s) 539
PciSI GCTCTTC 1 cut(s) 286
PfeI GAWTC 2 cut(s) 4, 76
PkrI GCNGC 2 cut(s) 373, 521
PleI GAGTC 3 cut(s) 374, 482, 525
PpsI GAGTC 3 cut(s) 374, 482, 525
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 1 cut(s) 361
PstI CTGCAG 1 cut(s) 485
PsuI RGATCY 1 cut(s) 309
RseI CAYNNNNRTG 1 cut(s) 539
Rsr2I CGGWCCG 1 cut(s) 361
RsrII CGGWCCG 1 cut(s) 361
SapI GCTCTTC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 2 cut(s) 372, 520
Sau3AI GATC 5 cut(s) 34, 133, 309, 316, 423
Sau96I GGNCC 1 cut(s) 361
SchI GAGTC 3 cut(s) 375, 482, 525
SetI ASST 7 cut(s) 115, 150, 159, 198, 351, 543, 548
SfcI CTRYAG 1 cut(s) 481
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 2 cut(s) 50, 207
SmoI CTYRAG 2 cut(s) 50, 207
Sse9I AATT 3 cut(s) 322, 550, 565
SsiI CCGC 5 cut(s) 38, 359, 371, 374, 519
SspMI CTAG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 127, 405
TaiI ACGT 1 cut(s) 543
TaqI TCGA 1 cut(s) 426
TasI AATT 3 cut(s) 322, 550, 565
TauI GCSGC 2 cut(s) 374, 522
TfiI GAWTC 2 cut(s) 4, 76
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TspDTI ATGAA 5 cut(s) 7, 17, 114, 225, 314
TspGWI ACGGA 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 361
XagI CCTNNNNNAGG 1 cut(s) 152
XapI RAATTY 1 cut(s) 565
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.