Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0019844

Physical Location & Seq

Genomic Coordinates Reverse (-)

18549504 .. 18558836

Gene Structure 9333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG100800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGAGGTGGCGGCGATTGTGGAGGAGAGTGGCAGCCCGATCCCAATTTCCCATATGTCTTTGCAAGGGAGGTGGCCAGAGCGGTCCGAGTCGCGGCGGAGGACGAGGAGGTGGTGGTGGAAAGACGGTGGCTTTTGCAGATTGTGATCGATGGTTGGTTAGTTTACGGCGACCCCAGAAGAGTTCTGCTTCAACACACCATCTGCAGAGACTCTTCTGTTCCTTTCAACTGCCTTTACTGCGGCGACACCGGACTCACCAACGTTGCTAAATTTGAAAAGTCTGATCCTTGTATTGTGATGGACCCTCCTAACTGGACAAAAGCCAACTTTGCAGGCCCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0010363 GO:0010941 GO:0016020 GO:0031347 GO:0031348 GO:0034051 GO:0043067 GO:0043069 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

zf-LITAF-like

Protein Analysis

115

Amino Acids

12.77

Weight (kDa)

4.73

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019844)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337501 RchiOBHm_Chr4g0404941 RchiOBHm_Chr5g0057011
rosa_multiflora	Rmu_sc0006088.1_g000013
rosa_roxburghii	Rroxscaffold_2G00133340
rosa_samantha	Rh4AG092300 Rh4CG100800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	83
AccII	CGCG	1 cut(s)	95
AciI	CCGC	5 cut(s)	12, 83, 95, 98, 243
AclI	AACGTT	1 cut(s)	264
AclWI	GGATC	2 cut(s)	35, 281
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	3 cut(s)	194, 229, 278
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	35, 281
AlwNI	CAGNNNCTG	1 cut(s)	341
AoxI	GGCC	2 cut(s)	75, 337
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	272
AspS9I	GGNCC	3 cut(s)	85, 304, 338
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	2 cut(s)	85, 304
BalI	TGGCCA	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	3 cut(s)	146, 209, 295
BceAI	ACGGC	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	205
BisI	GCNGC	4 cut(s)	13, 35, 96, 244
BlsI	GCNGC	4 cut(s)	14, 36, 97, 245
Bme18I	GGWCC	2 cut(s)	85, 304
BmgT120I	GGNCC	3 cut(s)	85, 304, 338
BmiI	GGNNCC	1 cut(s)	306
Bsa29I	ATCGAT	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	146
BsaWI	WCCGGW	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	320
Bse8I	GATNNNNATC	1 cut(s)	146
BseCI	ATCGAT	1 cut(s)	150
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	2 cut(s)	39, 122
BseXI	GCAGC	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	77, 339
BshVI	ATCGAT	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	252
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	77, 339
Bsp143I	GATC	3 cut(s)	40, 147, 286
BspACI	CCGC	5 cut(s)	12, 83, 95, 98, 243
BspANI	GGCC	2 cut(s)	77, 339
BspDI	ATCGAT	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	209
BspPI	GGATC	2 cut(s)	35, 281
BsrBI	CCGCTC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	320
BssMI	GATC	3 cut(s)	40, 147, 286
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	2 cut(s)	175, 220
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	337
BstFNI	CGCG	1 cut(s)	95
BstKTI	GATC	3 cut(s)	43, 150, 289
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	3 cut(s)	40, 147, 286
BstMWI	GCNNNNNNNGC	3 cut(s)	240, 332, 341
BstSFI	CTRYAG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	77, 339
BsuTUI	ATCGAT	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	337
CaiI	CAGNNNCTG	1 cut(s)	341
Cfr13I	GGNCC	3 cut(s)	85, 304, 338
ClaI	ATCGAT	1 cut(s)	150
CpoI	CGGWCCG	1 cut(s)	85
CspCI	CAANNNNNGTGG	2 cut(s)	54, 89
CspI	CGGWCCG	1 cut(s)	85
CviAII	CATG	1 cut(s)	345
CviJI	RGCY	5 cut(s)	37, 77, 133, 326, 339
CviKI_1	RGCY	5 cut(s)	37, 77, 133, 326, 339
DpnI	GATC	3 cut(s)	42, 149, 288
DpnII	GATC	3 cut(s)	40, 147, 286
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	2 cut(s)	175, 220
EarI	CTCTTC	2 cut(s)	175, 220
EciI	GGCGGA	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	85, 304
EcoO109I	RGGNCCY	1 cut(s)	338
FaeI	CATG	1 cut(s)	348
FaiI	YATR	3 cut(s)	55, 57, 346
FatI	CATG	1 cut(s)	344
FauNDI	CATATG	1 cut(s)	55
Fnu4HI	GCNGC	4 cut(s)	13, 35, 96, 244
Fsp4HI	GCNGC	4 cut(s)	13, 35, 96, 244
GluI	GCNGC	4 cut(s)	13, 35, 96, 244
HaeIII	GGCC	2 cut(s)	77, 339
HapII	CCGG	1 cut(s)	252
Hin1II	CATG	1 cut(s)	348
HinfI	GANTC	3 cut(s)	90, 212, 255
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	89, 286
Hpy8I	GTNNAC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	5 cut(s)	65, 139, 207, 335, 344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	240, 332, 341
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	348
Kzo9I	GATC	3 cut(s)	40, 147, 286
LpnPI	CCDG	5 cut(s)	91, 190, 265, 301, 321
Lsp1109I	GCAGC	1 cut(s)	46
MaeII	ACGT	1 cut(s)	264
MalI	GATC	3 cut(s)	42, 149, 288
MbiI	CCGCTC	1 cut(s)	83
MboI	GATC	3 cut(s)	40, 147, 286
MboII	GAAGA	2 cut(s)	192, 207
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	2 cut(s)	46, 272
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	3 cut(s)	99, 206, 249
MnlI	CCTC	6 cut(s)	17, 64, 94, 100, 103, 318
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	77
MspI	CCGG	1 cut(s)	252
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	3 cut(s)	240, 332, 341
NdeI	CATATG	1 cut(s)	55
NdeII	GATC	3 cut(s)	40, 147, 286
NlaIII	CATG	1 cut(s)	348
NlaIV	GGNNCC	1 cut(s)	306
PkrI	GCNGC	4 cut(s)	14, 36, 97, 245
PleI	GAGTC	3 cut(s)	98, 206, 249
PpsI	GAGTC	3 cut(s)	98, 206, 249
Psp1406I	AACGTT	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	3 cut(s)	85, 304, 338
PstI	CTGCAG	1 cut(s)	209
PstNI	CAGNNNCTG	1 cut(s)	341
Rsr2I	CGGWCCG	1 cut(s)	85
RsrII	CGGWCCG	1 cut(s)	85
SatI	GCNGC	4 cut(s)	13, 35, 96, 244
Sau3AI	GATC	3 cut(s)	40, 147, 286
Sau96I	GGNCC	3 cut(s)	85, 304, 338
SchI	GAGTC	3 cut(s)	99, 206, 249
SetI	ASST	4 cut(s)	10, 75, 114, 267
SfcI	CTRYAG	1 cut(s)	205
SinI	GGWCC	2 cut(s)	85, 304
Sse9I	AATT	2 cut(s)	46, 272
SsiI	CCGC	5 cut(s)	12, 83, 95, 98, 243
TaaI	ACNGT	1 cut(s)	129
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	46, 272
TauI	GCSGC	3 cut(s)	15, 98, 246
TseI	GCWGC	1 cut(s)	34
VpaK11BI	GGWCC	2 cut(s)	85, 304
XapI	RAATTY	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.