Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019862

Physical Location & Seq

Genomic Coordinates Reverse (-)

31624860 .. 31625831

Gene Structure 972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGGCAGAAGAAACATTAGAGCTTCAAAGACTGATTCACTTGATGCTGGAAAACCTAACTTCTTTGTTGGGGTCCCTGGCTGCTCTTCAAATTGAGAAGTCACTAGAAGGCATGACATCTCTTGATGATCTTATACCATCATTACGAAAAATTAGGAAATTGGCAGAATTATTAGATATGCCCTTAAAAGCAATCACTACAGCTTGGGAAACTGGAGAACTGCGAAATGGTGGCTTTACATCGTCAGAGGTAGAAGATTTCATCAAAGCAATTTTTCAAGACTCACCTTTGCGGAAAGACTACTTATTGAGGGTACATGGCAACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006810 GO:0006888 GO:0007049 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016192 GO:0022402 GO:0030071 GO:0031577 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048193 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990423 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zw10

Protein Analysis

110

Amino Acids

12.39

Weight (kDa)

4.98

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZW10_C2	PF22766	1 - 106	1.7e-21	ZW10 C-terminal helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019862)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340121
rosa_roxburghii	Rroxscaffold_4G00312340 Rroxscaffold_5G00356910 Rroxscaffold_6G00390990 Rroxscaffold_6G00395340 Rroxscaffold_7G00200560
rosa_rugosa	RorugMtG0000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 295
AfaI	GTAC	1 cut(s)	318
AgsI	TTSAA	3 cut(s)	29, 92, 281
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	2 cut(s)	25, 206
AluI	AGCT	2 cut(s)	25, 206
ApeKI	GCWGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	279
AvaII	GGWCC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	2 cut(s)	6, 84
BlsI	GCNGC	2 cut(s)	7, 85
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	76, 77
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	2 cut(s)	5, 295
BspLI	GGNNCC	2 cut(s)	76, 77
BspQI	GCTCTTC	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	93
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	2 cut(s)	115, 320
CviJI	RGCY	4 cut(s)	25, 83, 206, 237
CviKI_1	RGCY	4 cut(s)	25, 83, 206, 237
CviQI	GTAC	1 cut(s)	317
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	78
FaeI	CATG	2 cut(s)	118, 323
FaiI	YATR	4 cut(s)	116, 137, 182, 321
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	2 cut(s)	114, 319
Fnu4HI	GCNGC	2 cut(s)	6, 84
Fsp4HI	GCNGC	2 cut(s)	6, 84
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	2 cut(s)	6, 84
GsuI	CTGGAG	1 cut(s)	237
Hin1II	CATG	2 cut(s)	118, 323
HinfI	GANTC	2 cut(s)	37, 284
HphI	GGTGA	1 cut(s)	279
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	2 cut(s)	125, 281
HpyAV	CCTTC	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	118, 323
KflI	GGGWCCC	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	130
LguI	GCTCTTC	1 cut(s)	93
LpnPI	CCDG	4 cut(s)	35, 65, 92, 201
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	3 cut(s)	23, 80, 269
MluCI	AATT	5 cut(s)	93, 153, 161, 170, 273
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	2 cut(s)	244, 306
MseI	TTAA	2 cut(s)	188, 331
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	118, 323
NlaIV	GGNNCC	2 cut(s)	76, 77
NmuCI	GTSAC	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	7, 85
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PpuMI	RGGWCCY	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	76, 77
PspPI	GGNCC	1 cut(s)	75
PspPPI	RGGWCCY	1 cut(s)	75
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	188, 331
SatI	GCNGC	2 cut(s)	6, 84
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	5 cut(s)	27, 60, 208, 255, 292
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	75
Sse9I	AATT	5 cut(s)	93, 153, 161, 170, 273
SsiI	CCGC	2 cut(s)	5, 295
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	78
TasI	AATT	5 cut(s)	93, 153, 161, 170, 273
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	2 cut(s)	188, 331
Tru9I	TTAA	2 cut(s)	188, 331
TseFI	GTSAC	1 cut(s)	102
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	102
TspDTI	ATGAA	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	75
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.