Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0019862

Physical Location & Seq

Genomic Coordinates Reverse (-)

47923746 .. 47925282

Gene Structure 1537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTGGCAAGGATTCTTCAAGCCTCCAACCAACAATTGGTCTTGGATGACATATCTGAAGTTGGTGTAACCAAACTCAAGCACTTTGTTTCTGCTGTTGGTATTGTCGGCCATGAAAGGAACTTTGTTTTGAAAAAAAGAAGAAAGCTTTCATCTTTGGCCGAAATTGTCGGTGGAGAGATTCTTCGAGGCGAGGGAGAAGCGGGAGCTGCTGGAGCTGGTGAGGAAATTCTGGAAATAAGCGAAAAATTAAAGGCTGCTAGAGAGACGGCGAGGAATGCGCGGGTTGATGAGGGTGAGCCTGTTGTTTATAGCTTGTTGAGGAAGGAGTGGTCGGTCGCTATGATGAGAGGAATTCGGTTTCGGTTTGTAGATTCAAGAGGGTTCTTGGACTCGATGCTTTGGAAGATTGACATGGCCAAGAATATCGAGTTGATGATTTCTAAGTTTCTTTCCAAGGAAGAAGACAGAAATCTTGGGAAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006810 GO:0006888 GO:0007049 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016192 GO:0022402 GO:0030071 GO:0031577 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048193 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990423 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zw10

Protein Analysis

162

Amino Acids

18.11

Weight (kDa)

9.22

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019862)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340121
rosa_roxburghii	Rroxscaffold_4G00312340 Rroxscaffold_5G00356910 Rroxscaffold_6G00390990 Rroxscaffold_6G00395340 Rroxscaffold_7G00200560
rosa_rugosa	RorugMtG0000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	37
AccII	CGCG	1 cut(s)	283
AciI	CCGC	2 cut(s)	203, 283
AcoI	YGGCCR	3 cut(s)	109, 159, 417
AcsI	RAATTY	2 cut(s)	228, 354
AcuI	CTGAAG	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	3 cut(s)	20, 133, 378
AluBI	AGCT	4 cut(s)	148, 209, 218, 315
AluI	AGCT	4 cut(s)	148, 209, 218, 315
Alw26I	GTCTC	1 cut(s)	260
AoxI	GGCC	3 cut(s)	109, 159, 417
ApeKI	GCWGC	2 cut(s)	209, 257
ApoI	RAATTY	2 cut(s)	228, 354
Asp700I	GAANNNNTTC	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	283
AsuHPI	GGTGA	2 cut(s)	233, 308
BalI	TGGCCA	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	196, 244
BceAI	ACGGC	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	2 cut(s)	261, 487
BglII	AGATCT	1 cut(s)	483
BisI	GCNGC	2 cut(s)	210, 258
BlsI	GCNGC	2 cut(s)	211, 259
BmsI	GCATC	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	196, 244
Bsh1236I	CGCG	1 cut(s)	283
Bsh1285I	CGRYCG	1 cut(s)	339
BshFI	GGCC	3 cut(s)	111, 161, 419
BsiEI	CGRYCG	1 cut(s)	339
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	260
BsmBI	CGTCTC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	3 cut(s)	111, 161, 419
Bsp143I	GATC	1 cut(s)	483
BspACI	CCGC	2 cut(s)	203, 283
BspANI	GGCC	3 cut(s)	111, 161, 419
BspFNI	CGCG	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	1 cut(s)	483
BssT1I	CCWWGG	1 cut(s)	456
BstDEI	CTNAG	1 cut(s)	444
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	1 cut(s)	486
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	483
BstMCI	CGRYCG	1 cut(s)	339
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 215, 278
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	2 cut(s)	196, 244
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
BsuRI	GGCC	3 cut(s)	111, 161, 419
BtsCI	GGATG	1 cut(s)	52
CfoI	GCGC	1 cut(s)	283
CviAII	CATG	2 cut(s)	113, 415
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	1 cut(s)	485
DpnII	GATC	1 cut(s)	483
EaeI	YGGCCR	3 cut(s)	109, 159, 417
Eco130I	CCWWGG	1 cut(s)	456
Eco57I	CTGAAG	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	456
Esp3I	CGTCTC	1 cut(s)	260
FaeI	CATG	2 cut(s)	116, 418
FaiI	YATR	5 cut(s)	53, 114, 312, 344, 416
FatI	CATG	2 cut(s)	112, 414
FauI	CCCGC	2 cut(s)	196, 276
Fnu4HI	GCNGC	2 cut(s)	210, 258
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	210, 258
FspBI	CTAG	2 cut(s)	261, 487
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	210, 258
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	111, 161, 419
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	116, 418
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	4 cut(s)	13, 181, 374, 392
HphI	GGTGA	2 cut(s)	233, 308
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	233, 378
HpyAV	CCTTC	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 215, 278
HpyF3I	CTNAG	1 cut(s)	444
Hsp92II	CATG	2 cut(s)	116, 418
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	1 cut(s)	483
LmnI	GCTCC	2 cut(s)	206, 215
LpnPI	CCDG	4 cut(s)	198, 204, 218, 315
Lsp1109I	GCAGC	2 cut(s)	196, 244
LweI	GCATC	1 cut(s)	387
MaeI	CTAG	2 cut(s)	261, 487
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	485
MboI	GATC	1 cut(s)	483
MboII	GAAGA	6 cut(s)	8, 153, 176, 418, 473, 476
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	1 cut(s)	483
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	5 cut(s)	35, 165, 228, 248, 354
MluNI	TGGCCA	1 cut(s)	419
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	9 cut(s)	34, 182, 187, 217, 267, 286, 315, 344, 374
Mox20I	TGGCCA	1 cut(s)	419
MroXI	GAANNNNTTC	1 cut(s)	148
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	1 cut(s)	251
Msp20I	TGGCCA	1 cut(s)	419
MunI	CAATTG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	283
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	3 cut(s)	209, 215, 278
NdeII	GATC	1 cut(s)	483
NlaIII	CATG	2 cut(s)	116, 418
PctI	GAATGC	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	148
PfeI	GAWTC	3 cut(s)	13, 181, 374
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	211, 259
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	2 cut(s)	210, 258
Sau3AI	GATC	1 cut(s)	483
SchI	GAGTC	1 cut(s)	386
SetI	ASST	4 cut(s)	150, 211, 220, 317
SfaNI	GCATC	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	5 cut(s)	35, 165, 228, 248, 354
SsiI	CCGC	2 cut(s)	203, 283
SspMI	CTAG	2 cut(s)	261, 487
StyI	CCWWGG	1 cut(s)	456
TaqI	TCGA	3 cut(s)	187, 395, 429
TaqII	GACCGA	1 cut(s)	325
TasI	AATT	5 cut(s)	35, 165, 228, 248, 354
TfiI	GAWTC	3 cut(s)	13, 181, 374
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TseI	GCWGC	2 cut(s)	209, 257
TspDTI	ATGAA	2 cut(s)	129, 141
Van91I	CCANNNNNTGG	1 cut(s)	37
XapI	RAATTY	2 cut(s)	228, 354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	148
XspI	CTAG	2 cut(s)	261, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.