Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0019862

Physical Location & Seq

Genomic Coordinates Reverse (-)

36359873 .. 36365874

Gene Structure 6002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00356910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGGATGCTCCGAGTGTGGGACACTCCGACCCGAGCACGGGAGGCTCCCTTCTTTCGGGCCGGACAGCGGCGAGCGAGTAGCCGATCCGAAGAACCGAGTGGACGCCGGTCCGGATGTATTGCAACGCCACCGGAGTTTGGTGACAACGTCGGATTTCGCCGTAATGGACGCTCGTTCGACTCAATCAACGTCCGAGAGCTCCTCCTCTCGTGGGCGCGAGGACCTCGGCGACCGCACCACACCTCTCTCCACCTCCTCATCCAACGCCTCGACTCCCACTCCCTCAAAATCAAGTCCAAAATCCAATCCTACCTCTCTCTCACCACGAAGGAGGCGAGGGAGAAGTGGGAGCTGCTTTGGAGCTGGTGCTAGAGAGGCGGCGAGGAATGCGCGGGTTGATGAGGGTGAGCCCGTTGTTTATAGCTTGTTGAGGAAGGAGTGGTCGACCGCTATGATGAGAGGAATTCGGTTTCGGTTTGTAGATTCAAGAGGGTTCTTGGACTCGATGCTTTGGAAGATTGACATGGCCAAGAATATCGAGTTGATTATTTCTAAGTTTCTTTCCAAGGAAGAAGACGAAATCTTGGGAAGATCTAGGAATTTGCTTCTACAATGTGATTTTGCTATTTCTCAAGAGAATACAAGGAGGAAAGGTAAGCGAGGATGGGGCTGCGGCAATACTCCGGAAGATGTTGACTTGCTATTTCTTTCGGAACGGTGTGTGGTGTCCAAAGCGACAATTCAATTAATGAAGTTAGTGCACGTGACACTCAAGGATGTCGCTTGTCATCCCCTAGAGTTGCATTGGAATTTTATCGTGCTGCTAGGGATGTACTACTTTTATATGAAGTTGTCATACGTCACGTCGGAACGGCGGCTTGATGGCATCAACCAGGTTGTTGTTCTCATGCACAACGATTGCCTTTATCTATCTCGGGAGCTTCTTGGGCTTGCATTTGAGACTTTCCAACTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006810 GO:0006888 GO:0007049 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016192 GO:0022402 GO:0030071 GO:0031577 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048193 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990423 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zw10

Protein Analysis

326

Amino Acids

36.58

Weight (kDa)

9.02

Isoelectric Point (pI)

58.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZW10_C	PF20666	236 - 322	1.4e-16	Centromere/kinetochore protein zw10, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019862)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340121
rosa_roxburghii	Rroxscaffold_4G00312340 Rroxscaffold_5G00356910 Rroxscaffold_6G00390990 Rroxscaffold_6G00395340 Rroxscaffold_7G00200560
rosa_rugosa	RorugMtG0000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	446
AccII	CGCG	2 cut(s)	219, 394
AccIII	TCCGGA	2 cut(s)	112, 685
AciI	CCGC	7 cut(s)	69, 235, 380, 394, 450, 675, 877
AclWI	GGATC	1 cut(s)	80
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	3 cut(s)	465, 601, 811
AcvI	CACGTG	1 cut(s)	766
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	1 cut(s)	836
AfiI	CCNNNNNNNGG	7 cut(s)	18, 38, 39, 56, 68, 139, 213
AgsI	TTSAA	3 cut(s)	489, 746, 977
AjiI	CACGTC	1 cut(s)	867
AjnI	CCWGG	1 cut(s)	894
AluBI	AGCT	5 cut(s)	201, 354, 365, 426, 943
AluI	AGCT	5 cut(s)	201, 354, 365, 426, 943
Alw21I	GWGCWC	3 cut(s)	39, 203, 765
Alw26I	GTCTC	1 cut(s)	956
Alw44I	GTGCAC	1 cut(s)	761
AlwI	GGATC	1 cut(s)	80
Ama87I	CYCGRG	2 cut(s)	32, 936
Aor13HI	TCCGGA	2 cut(s)	112, 685
AoxI	GGCC	2 cut(s)	59, 528
ApaLI	GTGCAC	1 cut(s)	761
ApeKI	GCWGC	3 cut(s)	354, 672, 823
ApoI	RAATTY	3 cut(s)	465, 601, 811
AseI	ATTAAT	1 cut(s)	749
AspLEI	GCGC	2 cut(s)	219, 394
AspS9I	GGNCC	3 cut(s)	59, 110, 223
AsuHPI	GGTGA	3 cut(s)	154, 315, 419
AvaI	CYCGRG	2 cut(s)	32, 936
AvaII	GGWCC	2 cut(s)	110, 223
BaeGI	GKGCMC	1 cut(s)	765
BalI	TGGCCA	1 cut(s)	530
BanII	GRGCYC	2 cut(s)	203, 414
BarI	GAAGNNNNNNTAC	2 cut(s)	842, 874
BauI	CACGAG	1 cut(s)	210
BbrPI	CACGTG	1 cut(s)	766
BbsI	GAAGAC	1 cut(s)	582
Bbv12I	GWGCWC	3 cut(s)	39, 203, 765
BbvI	GCAGC	3 cut(s)	341, 659, 810
BccI	CCATC	2 cut(s)	660, 878
BceAI	ACGGC	2 cut(s)	146, 890
BciT130I	CCWGG	1 cut(s)	896
BcoDI	GTCTC	1 cut(s)	956
BfaI	CTAG	4 cut(s)	372, 597, 797, 827
BglII	AGATCT	1 cut(s)	593
BisI	GCNGC	7 cut(s)	70, 355, 381, 673, 676, 824, 878
BlsI	GCNGC	7 cut(s)	71, 356, 382, 674, 677, 825, 879
Bme1390I	CCNGG	1 cut(s)	896
Bme18I	GGWCC	2 cut(s)	110, 223
BmeT110I	CYCGRG	2 cut(s)	32, 936
BmgBI	CACGTC	1 cut(s)	867
BmgT120I	GGNCC	3 cut(s)	59, 110, 223
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	896
BmsI	GCATC	2 cut(s)	498, 897
BoxI	GACNNNNGTC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	582
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BpuEI	CTTGAG	2 cut(s)	618, 758
BsaAI	YACGTR	1 cut(s)	766
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	226, 567
BsaWI	WCCGGW	3 cut(s)	112, 132, 685
BsaXI	ACNNNNNCTCC	4 cut(s)	265, 295, 640, 670
Bsc4I	CCNNNNNNNGG	7 cut(s)	18, 38, 39, 56, 68, 139, 213
Bse118I	RCCGGY	1 cut(s)	107
BseAI	TCCGGA	2 cut(s)	112, 685
BseBI	CCWGG	1 cut(s)	896
BseDI	CCNNGG	2 cut(s)	226, 567
BseGI	GGATG	7 cut(s)	11, 121, 260, 671, 784, 790, 837
BseLI	CCNNNNNNNGG	7 cut(s)	18, 38, 39, 56, 68, 139, 213
BseRI	GAGGAG	3 cut(s)	193, 196, 247
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	3 cut(s)	341, 659, 810
Bsh1236I	CGCG	2 cut(s)	219, 394
Bsh1285I	CGRYCG	2 cut(s)	235, 450
BshFI	GGCC	2 cut(s)	61, 530
BsiEI	CGRYCG	2 cut(s)	235, 450
BsiHKAI	GWGCWC	3 cut(s)	39, 203, 765
BsiHKCI	CYCGRG	2 cut(s)	32, 936
BsiSI	CCGG	5 cut(s)	62, 108, 113, 133, 686
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	7 cut(s)	18, 38, 39, 56, 68, 139, 213
BsmAI	GTCTC	1 cut(s)	956
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	61, 530
BsoBI	CYCGRG	2 cut(s)	32, 936
Bsp1286I	GDGCHC	4 cut(s)	39, 203, 414, 765
Bsp13I	TCCGGA	2 cut(s)	112, 685
Bsp143I	GATC	2 cut(s)	85, 593
BspACI	CCGC	7 cut(s)	69, 235, 380, 394, 450, 675, 877
BspANI	GGCC	2 cut(s)	61, 530
BspEI	TCCGGA	2 cut(s)	112, 685
BspFNI	CGCG	2 cut(s)	219, 394
BspLI	GGNNCC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	226, 567
BssMI	GATC	2 cut(s)	85, 593
BssNI	GRCGYC	1 cut(s)	105
BssSI	CACGAG	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	567
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	896
Bst4CI	ACNGT	1 cut(s)	720
BstACI	GRCGYC	1 cut(s)	105
BstBAI	YACGTR	1 cut(s)	766
BstC8I	GCNNGC	2 cut(s)	74, 954
BstDEI	CTNAG	1 cut(s)	555
BstF5I	GGATG	7 cut(s)	11, 121, 260, 671, 784, 790, 837
BstFNI	CGCG	2 cut(s)	219, 394
BstHHI	GCGC	2 cut(s)	219, 394
BstKTI	GATC	2 cut(s)	88, 596
BstMAI	GTCTC	1 cut(s)	956
BstMBI	GATC	2 cut(s)	85, 593
BstMCI	CGRYCG	2 cut(s)	235, 450
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 377, 389, 949
BstNI	CCWGG	1 cut(s)	896
BstPAI	GACNNNNGTC	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	894
BstSLI	GKGCMC	1 cut(s)	765
BstUI	CGCG	2 cut(s)	219, 394
BstV1I	GCAGC	3 cut(s)	341, 659, 810
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	2 cut(s)	61, 530
BtrI	CACGTC	1 cut(s)	867
BtsCI	GGATG	7 cut(s)	11, 121, 260, 671, 784, 790, 837
Cac8I	GCNNGC	2 cut(s)	74, 954
CfoI	GCGC	2 cut(s)	219, 394
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	3 cut(s)	59, 110, 223
CpoI	CGGWCCG	1 cut(s)	110
CseI	GACGC	2 cut(s)	113, 179
CsiI	ACCWGGT	1 cut(s)	894
Csp6I	GTAC	1 cut(s)	835
CspI	CGGWCCG	1 cut(s)	110
CviAII	CATG	2 cut(s)	526, 910
CviQI	GTAC	1 cut(s)	835
DdeI	CTNAG	1 cut(s)	555
DpnI	GATC	2 cut(s)	87, 595
DpnII	GATC	2 cut(s)	85, 593
EaeI	YGGCCR	1 cut(s)	528
Ecl136II	GAGCTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	567
Eco24I	GRGCYC	2 cut(s)	203, 414
Eco47I	GGWCC	2 cut(s)	110, 223
Eco53kI	GAGCTC	1 cut(s)	201
Eco72I	CACGTG	1 cut(s)	766
Eco88I	CYCGRG	2 cut(s)	32, 936
EcoICRI	GAGCTC	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	894
EcoT14I	CCWWGG	1 cut(s)	567
EcoT38I	GRGCYC	2 cut(s)	203, 414
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	2 cut(s)	529, 913
FaiI	YATR	7 cut(s)	423, 455, 527, 846, 848, 859, 911
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	2 cut(s)	525, 909
FauI	CCCGC	1 cut(s)	387
FblI	GTMKAC	1 cut(s)	446
Fnu4HI	GCNGC	7 cut(s)	70, 355, 381, 673, 676, 824, 878
FokI	GGATG	7 cut(s)	18, 128, 247, 678, 777, 791, 844
FriOI	GRGCYC	2 cut(s)	203, 414
Fsp4HI	GCNGC	7 cut(s)	70, 355, 381, 673, 676, 824, 878
FspBI	CTAG	4 cut(s)	372, 597, 797, 827
GlaI	GCGC	2 cut(s)	218, 393
GluI	GCNGC	7 cut(s)	70, 355, 381, 673, 676, 824, 878
HaeIII	GGCC	2 cut(s)	61, 530
HapII	CCGG	5 cut(s)	62, 108, 113, 133, 686
HgaI	GACGC	2 cut(s)	113, 179
HhaI	GCGC	2 cut(s)	219, 394
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	529, 913
Hin6I	GCGC	2 cut(s)	217, 392
HinP1I	GCGC	2 cut(s)	217, 392
HincII	GTYRAC	2 cut(s)	447, 697
HindII	GTYRAC	2 cut(s)	447, 697
HinfI	GANTC	4 cut(s)	181, 274, 485, 503
HpaII	CCGG	5 cut(s)	62, 108, 113, 133, 686
HphI	GGTGA	3 cut(s)	154, 315, 419
Hpy166II	GTNNAC	4 cut(s)	103, 447, 697, 763
Hpy188I	TCNGA	7 cut(s)	13, 29, 90, 154, 196, 715, 871
Hpy188III	TCNNGA	5 cut(s)	113, 489, 635, 686, 938
Hpy8I	GTNNAC	4 cut(s)	103, 447, 697, 763
Hpy99I	CGWCG	2 cut(s)	154, 871
HpyAV	CCTTC	3 cut(s)	60, 324, 430
HpyCH4III	ACNGT	1 cut(s)	720
HpyCH4IV	ACGT	5 cut(s)	149, 191, 765, 861, 866
HpyCH4V	TGCA	5 cut(s)	124, 763, 805, 913, 956
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 377, 389, 949
HpyF3I	CTNAG	1 cut(s)	555
HpySE526I	ACGT	5 cut(s)	149, 191, 765, 861, 866
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	529, 913
HspAI	GCGC	2 cut(s)	217, 392
Kpn2I	TCCGGA	2 cut(s)	112, 685
Kzo9I	GATC	2 cut(s)	85, 593
LmnI	GCTCC	6 cut(s)	14, 51, 206, 351, 362, 940
LpnPI	CCDG	8 cut(s)	75, 121, 126, 146, 351, 699, 881, 908
Lsp1109I	GCAGC	3 cut(s)	341, 659, 810
LweI	GCATC	2 cut(s)	498, 897
MabI	ACCWGGT	1 cut(s)	894
MaeI	CTAG	4 cut(s)	372, 597, 797, 827
MaeII	ACGT	5 cut(s)	149, 191, 765, 861, 866
MaeIII	GTNAC	3 cut(s)	142, 766, 862
MalI	GATC	2 cut(s)	87, 595
MboI	GATC	2 cut(s)	85, 593
MboII	GAAGA	6 cut(s)	103, 529, 584, 587, 603, 701
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	4 cut(s)	39, 203, 414, 765
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	5 cut(s)	465, 601, 741, 746, 811
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	3 cut(s)	175, 268, 497
MmeI	TCCRAC	4 cut(s)	52, 132, 288, 849
Mox20I	TGGCCA	1 cut(s)	530
MroI	TCCGGA	2 cut(s)	112, 685
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	1 cut(s)	749
Msp20I	TGGCCA	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	69
MspI	CCGG	5 cut(s)	62, 108, 113, 133, 686
MspR9I	CCNGG	1 cut(s)	896
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	896
MvnI	CGCG	2 cut(s)	219, 394
MwoI	GCNNNNNNNGC	4 cut(s)	43, 377, 389, 949
NdeII	GATC	2 cut(s)	85, 593
NlaIII	CATG	2 cut(s)	529, 913
NlaIV	GGNNCC	1 cut(s)	47
NmeAIII	GCCGAG	1 cut(s)	207
NmuCI	GTSAC	3 cut(s)	142, 766, 862
PcsI	WCGNNNNNNNCGW	1 cut(s)	334
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	485
PflFI	GACNNNGTC	1 cut(s)	148
PkrI	GCNGC	7 cut(s)	71, 356, 382, 674, 677, 825, 879
PleI	GAGTC	3 cut(s)	175, 268, 497
PmaCI	CACGTG	1 cut(s)	766
PmlI	CACGTG	1 cut(s)	766
PpsI	GAGTC	3 cut(s)	175, 268, 497
Ppu21I	YACGTR	1 cut(s)	766
PpuMI	RGGWCCY	1 cut(s)	223
PshAI	GACNNNNGTC	1 cut(s)	108
PshBI	ATTAAT	1 cut(s)	749
Psp124BI	GAGCTC	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	894
PspCI	CACGTG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	894
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	3 cut(s)	59, 110, 223
PspPPI	RGGWCCY	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	593
PsyI	GACNNNGTC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	836
RsaNI	GTAC	1 cut(s)	835
Rsr2I	CGGWCCG	1 cut(s)	110
RsrII	CGGWCCG	1 cut(s)	110
SacI	GAGCTC	1 cut(s)	203
SalI	GTCGAC	1 cut(s)	445
SaqAI	TTAA	1 cut(s)	749
SatI	GCNGC	7 cut(s)	70, 355, 381, 673, 676, 824, 878
Sau3AI	GATC	2 cut(s)	85, 593
Sau96I	GGNCC	3 cut(s)	59, 110, 223
SchI	GAGTC	3 cut(s)	175, 268, 497
ScrFI	CCNGG	1 cut(s)	896
SduI	GDGCHC	4 cut(s)	39, 203, 414, 765
SexAI	ACCWGGT	1 cut(s)	894
SfaNI	GCATC	2 cut(s)	498, 897
SinI	GGWCC	2 cut(s)	110, 223
SmlI	CTYRAG	2 cut(s)	633, 773
SmoI	CTYRAG	2 cut(s)	633, 773
Sse9I	AATT	5 cut(s)	465, 601, 741, 746, 811
SsiI	CCGC	7 cut(s)	69, 235, 380, 394, 450, 675, 877
SspMI	CTAG	4 cut(s)	372, 597, 797, 827
SstI	GAGCTC	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	894
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	1 cut(s)	720
TaiI	ACGT	5 cut(s)	152, 194, 768, 864, 869
TaqI	TCGA	5 cut(s)	179, 272, 446, 506, 540
TasI	AATT	5 cut(s)	465, 601, 741, 746, 811
TatI	WGTACW	1 cut(s)	834
TauI	GCSGC	4 cut(s)	72, 383, 678, 880
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	1 cut(s)	749
Tru9I	TTAA	1 cut(s)	749
TseFI	GTSAC	3 cut(s)	142, 766, 862
TseI	GCWGC	3 cut(s)	354, 672, 823
Tsp45I	GTSAC	3 cut(s)	142, 766, 862
TspDTI	ATGAA	2 cut(s)	767, 863
Tth111I	GACNNNGTC	1 cut(s)	148
VneI	GTGCAC	1 cut(s)	761
VpaK11BI	GGWCC	2 cut(s)	110, 223
VspI	ATTAAT	1 cut(s)	749
XapI	RAATTY	3 cut(s)	465, 601, 811
XmiI	GTMKAC	1 cut(s)	446
XspI	CTAG	4 cut(s)	372, 597, 797, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.