Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0019862

Physical Location & Seq

Genomic Coordinates Forward (+)

16384615 .. 16387502

Gene Structure 2888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00395340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGAGCCACTCTTATTGCCTTCAACTTACAAGAGAAGCATGTGTATGGTTCTCGAGTCAATTTTTCTAGAATCACAAAAGACATACTCCATTTAGATGATATGGCAGCAGAAGAAACATTAGAGCTTCAAAGACCGATTCACTTGATGCTGGAAAACTTAACTTCTTTGTTGGGGTCCCTGGCTGCTCTTCAAGTTGAGAGGTCACAAGAGGGCATGACATCTCTTGATGATTTTATACCATCATTACGAAAACTTAGGAAATTGGCAGAATTATTAGATATGCCCTTGAAAACAATCACTGCAGCTTGGGAAACCGGAGAACTGCGAAATGGTGGCTTTACATCGTCGGAGGTAGAAGATTTCATCAGAGCAATTTTTCAAGACTCACCTTTGCGGAAATACTGCTTATGGAGGGTACATGGTGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006810 GO:0006888 GO:0007049 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016192 GO:0022402 GO:0030071 GO:0031577 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048193 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990423 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zw10

Protein Analysis

144

Amino Acids

16.39

Weight (kDa)

5.35

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZW10_C2	PF22766	22 - 140	7.4e-27	ZW10 C-terminal helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019862)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340121
rosa_roxburghii	Rroxscaffold_4G00312340 Rroxscaffold_5G00356910 Rroxscaffold_6G00390990 Rroxscaffold_6G00395340 Rroxscaffold_7G00200560
rosa_rugosa	RorugMtG0000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	397
AfaI	GTAC	1 cut(s)	420
AgsI	TTSAA	5 cut(s)	25, 131, 194, 292, 383
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	2 cut(s)	127, 308
AluI	AGCT	2 cut(s)	127, 308
Ama87I	CYCGRG	1 cut(s)	54
ApeKI	GCWGC	3 cut(s)	107, 185, 305
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	381
AvaI	CYCGRG	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	119, 172, 317
BccI	CCATC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	182
BclI	TGATCA	1 cut(s)	427
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	303
BisI	GCNGC	3 cut(s)	108, 186, 306
BlsI	GCNGC	3 cut(s)	109, 187, 307
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	177
BmeT110I	CYCGRG	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	3 cut(s)	7, 178, 179
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	180
BseXI	GCAGC	3 cut(s)	119, 172, 317
BsiHKCI	CYCGRG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	163
BsoBI	CYCGRG	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	427
BspACI	CCGC	1 cut(s)	397
BspLI	GGNNCC	3 cut(s)	7, 178, 179
BspMAI	CTGCAG	1 cut(s)	307
BspQI	GCTCTTC	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	427
Bst2UI	CCWGG	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	257
BstKTI	GATC	1 cut(s)	430
BstMBI	GATC	1 cut(s)	427
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	3 cut(s)	119, 172, 317
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	419
CspCI	CAANNNNNGTGG	1 cut(s)	33
CviAII	CATG	3 cut(s)	41, 217, 422
CviJI	RGCY	5 cut(s)	8, 127, 185, 308, 339
CviKI_1	RGCY	5 cut(s)	8, 127, 185, 308, 339
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	180
FaeI	CATG	3 cut(s)	44, 220, 425
FaiI	YATR	9 cut(s)	42, 48, 86, 104, 218, 239, 284, 412, 423
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	3 cut(s)	40, 216, 421
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	3 cut(s)	108, 186, 306
Fsp4HI	GCNGC	3 cut(s)	108, 186, 306
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	3 cut(s)	108, 186, 306
HapII	CCGG	1 cut(s)	318
Hin1II	CATG	3 cut(s)	44, 220, 425
HinfI	GANTC	4 cut(s)	57, 72, 139, 386
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	1 cut(s)	381
Hpy188I	TCNGA	2 cut(s)	352, 371
Hpy188III	TCNNGA	4 cut(s)	54, 69, 227, 383
Hpy99I	CGWCG	1 cut(s)	352
HpyAV	CCTTC	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	305
HpyF3I	CTNAG	1 cut(s)	257
Hsp92II	CATG	3 cut(s)	44, 220, 425
KflI	GGGWCCC	1 cut(s)	177
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	1 cut(s)	427
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	4 cut(s)	137, 167, 194, 331
Lsp1109I	GCAGC	3 cut(s)	119, 172, 317
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	204
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	3 cut(s)	125, 182, 371
MluCI	AATT	4 cut(s)	61, 263, 272, 375
MlyI	GAGTC	2 cut(s)	66, 380
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	4 cut(s)	195, 205, 346, 408
MseI	TTAA	1 cut(s)	161
MslI	CAYNNNNRTG	2 cut(s)	45, 96
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	3 cut(s)	44, 220, 425
NlaIV	GGNNCC	3 cut(s)	7, 178, 179
NmuCI	GTSAC	1 cut(s)	204
NspI	RCATGY	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	54
PciSI	GCTCTTC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	72, 139
PkrI	GCNGC	3 cut(s)	109, 187, 307
PleI	GAGTC	2 cut(s)	65, 380
PpsI	GAGTC	2 cut(s)	65, 380
PpuMI	RGGWCCY	1 cut(s)	177
Psp5II	RGGWCCY	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	3 cut(s)	7, 178, 179
PspPI	GGNCC	1 cut(s)	177
PspPPI	RGGWCCY	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	307
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
RseI	CAYNNNNRTG	2 cut(s)	45, 96
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	3 cut(s)	108, 186, 306
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	2 cut(s)	66, 380
ScrFI	CCNGG	1 cut(s)	182
SetI	ASST	5 cut(s)	129, 206, 310, 357, 394
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	303
Sfr274I	CTCGAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	177
SlaI	CTCGAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	2 cut(s)	45, 96
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
Sse9I	AATT	4 cut(s)	61, 263, 272, 375
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	180
TaqI	TCGA	1 cut(s)	55
TaqII	GACCGA	1 cut(s)	151
TasI	AATT	4 cut(s)	61, 263, 272, 375
TfiI	GAWTC	2 cut(s)	72, 139
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	204
TseI	GCWGC	3 cut(s)	107, 185, 305
Tsp45I	GTSAC	1 cut(s)	204
TspDTI	ATGAA	1 cut(s)	355
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	177
XbaI	TCTAGA	1 cut(s)	68
XceI	RCATGY	1 cut(s)	44
XhoI	CTCGAG	1 cut(s)	54
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.