Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0019862

Physical Location & Seq

Genomic Coordinates Reverse (-)

35255521 .. 35280935

Gene Structure 25415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00312340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGAGCCACTCTTATTGCCTTCAACTTACAAGAGAAGCATGTGTATGGTTCTCGAGTCAATTTTTCTAGAATCACAAAAGACATACTCCATTTAGATGATATGGCAGCAGAAGAAACATTAGAGCTTCAAAGACCGATTCACTTGATGCCGGAAAACTTAACTTCTTTGTTGGGGTCCCCGGCTGCTCTTCAAGTTGAGAGGTCACAAGAGGGCATGACATCTCTTGATGATTTTATACCATCATTACGAAAACTTAGGAAATTGGCAGAATTATTAGATATGCCCTTGAAAACAATCACTGCAGCTTGGGACACCGGAGAACCTGGCTTGAACCCAGTTCAGTTGTCACCGGATGGAGTGAGTGAGTCACAGTTCAACCAAGTCTTGAATGTAGAATTGGATCAGATTGTTGAGCTTTTAACAAAATCTTCCAGGCTGGTGGTTCTTCCACAATGGATATCTGTTTTGCTTGTTTTACCGAAATTTGACTATTTTCTTCTTGCAGATCAAGAGAAGGACCTGGTTGGACGATTCATGAATTCCGAGGGGCAAATTGATGAACAGCTCAAGAAGCAAACCTGCAGCATGCGCTTTGGAACACAACCTCCAGTTCAAGTTCCAATCACCGATATGGATGTAGATAGGGCAATGTCTTCTCCACCAGAAAATTACCAACCTCATAGCACAAATAGCGTTTTCGGGGAATCAAAAAAGACCAAGGTAGCAAAGTTTGAGAAAATGCTTACCAATATTTTAGGTGTACAAAATGCAAAAGGTTTCACAGCCCTTCATCTAGCGTTCATGGCACTAGCAACAAGGTTTGAGAAAACTGATCTTGTCCAACCTATCAACTATGAGGATATCCTCAAATCCCCTAACCTTCCGATAGAGCCGAGGAAACGCACGGAAGCAAGAGCTGATCAATGGAGGGTGAAAGCGTTGGATCCGTCTTCTATCGATCAAGAGCTGATCAATTTCCAATCCGATCTATTCCAGCCATATTTCGTCTTCCAATTAAACATATGGAGAGATCAAGTATGGAGGATGAAATTTTTGGCTGCTACTCTTTTATCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006810 GO:0006888 GO:0007049 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016192 GO:0022402 GO:0030071 GO:0031577 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048193 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990423 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zw10

Protein Analysis

360

Amino Acids

40.92

Weight (kDa)

5.32

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZW10_C2	PF22766	22 - 109	5.6e-12	ZW10 C-terminal helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019862)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340121
rosa_roxburghii	Rroxscaffold_4G00312340 Rroxscaffold_5G00356910 Rroxscaffold_6G00390990 Rroxscaffold_6G00395340 Rroxscaffold_7G00200560
rosa_rugosa	RorugMtG0000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	590
AclWI	GGATC	3 cut(s)	411, 941, 954
AcsI	RAATTY	3 cut(s)	485, 541, 1052
AfaI	GTAC	1 cut(s)	765
AgsI	TTSAA	8 cut(s)	25, 131, 194, 292, 334, 379, 391, 617
AjnI	CCWGG	3 cut(s)	325, 434, 522
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AloI	GAACNNNNNNTCC	2 cut(s)	592, 624
AluBI	AGCT	6 cut(s)	127, 308, 418, 568, 920, 970
AluI	AGCT	6 cut(s)	127, 308, 418, 568, 920, 970
AlwI	GGATC	3 cut(s)	411, 941, 954
Ama87I	CYCGRG	1 cut(s)	54
ApeKI	GCWGC	5 cut(s)	107, 185, 305, 585, 1061
ApoI	RAATTY	3 cut(s)	485, 541, 1052
AspLEI	GCGC	1 cut(s)	594
AspS9I	GGNCC	2 cut(s)	177, 520
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	3 cut(s)	342, 619, 946
AvaI	CYCGRG	1 cut(s)	54
AvaII	GGWCC	2 cut(s)	177, 520
BamHI	GGATCC	1 cut(s)	946
BbsI	GAAGAC	3 cut(s)	648, 945, 1003
BbvI	GCAGC	5 cut(s)	119, 172, 317, 597, 1048
BccI	CCATC	2 cut(s)	250, 350
BciT130I	CCWGG	3 cut(s)	327, 436, 524
BclI	TGATCA	2 cut(s)	922, 972
BcnI	CCSGG	1 cut(s)	182
BfaI	CTAG	3 cut(s)	69, 797, 812
BfmI	CTRYAG	2 cut(s)	303, 583
BfuAI	ACCTGC	1 cut(s)	590
BisI	GCNGC	5 cut(s)	108, 186, 306, 586, 1062
BlsI	GCNGC	5 cut(s)	109, 187, 307, 587, 1063
Bme1390I	CCNGG	4 cut(s)	182, 327, 436, 524
Bme18I	GGWCC	2 cut(s)	177, 520
BmeT110I	CYCGRG	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	177, 520
BmiI	GGNNCC	4 cut(s)	7, 178, 179, 948
BmrFI	CCNGG	4 cut(s)	182, 327, 436, 524
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	332
BpiI	GAAGAC	3 cut(s)	648, 945, 1003
BpmI	CTGGAG	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	554
BpuMI	CCSGG	1 cut(s)	182
Bsa29I	ATCGAT	1 cut(s)	960
BsaJI	CCNNGG	4 cut(s)	180, 546, 720, 896
BsaWI	WCCGGW	2 cut(s)	317, 352
BsaXI	ACNNNNNCTCC	2 cut(s)	592, 622
Bse1I	ACTGG	2 cut(s)	338, 611
Bse3DI	GCAATG	1 cut(s)	657
BseBI	CCWGG	3 cut(s)	327, 436, 524
BseCI	ATCGAT	1 cut(s)	960
BseDI	CCNNGG	4 cut(s)	180, 546, 720, 896
BseGI	GGATG	3 cut(s)	361, 643, 1053
BseMI	GCAATG	1 cut(s)	657
BseNI	ACTGG	2 cut(s)	338, 611
BseXI	GCAGC	5 cut(s)	119, 172, 317, 597, 1048
BshVI	ATCGAT	1 cut(s)	960
BsiHKCI	CYCGRG	1 cut(s)	54
BsiSI	CCGG	4 cut(s)	152, 182, 318, 353
BslFI	GGGAC	2 cut(s)	163, 326
BsmFI	GGGAC	2 cut(s)	163, 326
BsoBI	CYCGRG	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	763
Bsp143I	GATC	9 cut(s)	403, 508, 835, 922, 946, 961, 972, 988, 1033
BspDI	ATCGAT	1 cut(s)	960
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	4 cut(s)	7, 178, 179, 948
BspMAI	CTGCAG	2 cut(s)	307, 587
BspMI	ACCTGC	1 cut(s)	590
BspPI	GGATC	3 cut(s)	411, 941, 954
BspQI	GCTCTTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	657
BsrGI	TGTACA	1 cut(s)	763
BsrI	ACTGG	2 cut(s)	338, 611
BssECI	CCNNGG	4 cut(s)	180, 546, 720, 896
BssMI	GATC	9 cut(s)	403, 508, 835, 922, 946, 961, 972, 988, 1033
BssT1I	CCWWGG	1 cut(s)	720
Bst2UI	CCWGG	3 cut(s)	327, 436, 524
Bst4CI	ACNGT	1 cut(s)	375
Bst6I	CTCTTC	1 cut(s)	195
BstAUI	TGTACA	1 cut(s)	763
BstC8I	GCNNGC	1 cut(s)	590
BstDEI	CTNAG	1 cut(s)	257
BstF5I	GGATG	3 cut(s)	361, 643, 1053
BstHHI	GCGC	1 cut(s)	594
BstKTI	GATC	9 cut(s)	406, 511, 838, 925, 949, 964, 975, 991, 1036
BstMBI	GATC	9 cut(s)	403, 508, 835, 922, 946, 961, 972, 988, 1033
BstMWI	GCNNNNNNNGC	4 cut(s)	574, 591, 693, 806
BstNI	CCWGG	3 cut(s)	327, 436, 524
BstNSI	RCATGY	2 cut(s)	44, 592
BstSCI	CCNGG	4 cut(s)	180, 325, 434, 522
BstSFI	CTRYAG	2 cut(s)	303, 583
BstV1I	GCAGC	5 cut(s)	119, 172, 317, 597, 1048
BstV2I	GAAGAC	3 cut(s)	648, 945, 1003
BstX2I	RGATCY	1 cut(s)	946
BstXI	CCANNNNNNTGG	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	946
Bsu15I	ATCGAT	1 cut(s)	960
BsuTUI	ATCGAT	1 cut(s)	960
BtsCI	GGATG	3 cut(s)	361, 643, 1053
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	590
Cac8I	GCNNGC	1 cut(s)	590
CciI	TCATGA	1 cut(s)	537
CfoI	GCGC	1 cut(s)	594
Cfr13I	GGNCC	2 cut(s)	177, 520
ClaI	ATCGAT	1 cut(s)	960
CsiI	ACCWGGT	1 cut(s)	522
Csp6I	GTAC	1 cut(s)	764
CspCI	CAANNNNNGTGG	1 cut(s)	33
CviAII	CATG	5 cut(s)	41, 217, 538, 589, 805
CviQI	GTAC	1 cut(s)	764
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	9 cut(s)	405, 510, 837, 924, 948, 963, 974, 990, 1035
DpnII	GATC	9 cut(s)	403, 508, 835, 922, 946, 961, 972, 988, 1033
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	720
Eco32I	GATATC	2 cut(s)	462, 865
Eco47I	GGWCC	2 cut(s)	177, 520
Eco88I	CYCGRG	1 cut(s)	54
EcoO109I	RGGNCCY	2 cut(s)	177, 520
EcoRI	GAATTC	1 cut(s)	541
EcoRII	CCWGG	3 cut(s)	325, 434, 522
EcoRV	GATATC	2 cut(s)	462, 865
EcoT14I	CCWWGG	1 cut(s)	720
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	5 cut(s)	44, 220, 541, 592, 808
FaqI	GGGAC	2 cut(s)	163, 326
FatI	CATG	5 cut(s)	40, 216, 537, 588, 804
FauNDI	CATATG	1 cut(s)	1025
FbaI	TGATCA	2 cut(s)	922, 972
Fnu4HI	GCNGC	5 cut(s)	108, 186, 306, 586, 1062
FokI	GGATG	3 cut(s)	368, 650, 1060
Fsp4HI	GCNGC	5 cut(s)	108, 186, 306, 586, 1062
FspBI	CTAG	3 cut(s)	69, 797, 812
GlaI	GCGC	1 cut(s)	593
GluI	GCNGC	5 cut(s)	108, 186, 306, 586, 1062
GsuI	CTGGAG	1 cut(s)	594
HapII	CCGG	4 cut(s)	152, 182, 318, 353
HhaI	GCGC	1 cut(s)	594
Hin1II	CATG	5 cut(s)	44, 220, 541, 592, 808
Hin6I	GCGC	1 cut(s)	592
HinP1I	GCGC	1 cut(s)	592
HinfI	GANTC	6 cut(s)	57, 72, 139, 368, 534, 707
HpaII	CCGG	4 cut(s)	152, 182, 318, 353
HphI	GGTGA	3 cut(s)	342, 619, 946
Hpy166II	GTNNAC	1 cut(s)	764
Hpy188I	TCNGA	4 cut(s)	408, 547, 888, 988
Hpy188III	TCNNGA	8 cut(s)	54, 69, 227, 388, 512, 538, 571, 965
Hpy8I	GTNNAC	1 cut(s)	764
HpyAV	CCTTC	4 cut(s)	31, 511, 800, 893
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4V	TGCA	4 cut(s)	305, 506, 585, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	574, 591, 693, 806
HpyF3I	CTNAG	1 cut(s)	257
Hsp92II	CATG	5 cut(s)	44, 220, 541, 592, 808
HspAI	GCGC	1 cut(s)	592
KflI	GGGWCCC	1 cut(s)	177
Ksp22I	TGATCA	2 cut(s)	922, 972
Kzo9I	GATC	9 cut(s)	403, 508, 835, 922, 946, 961, 972, 988, 1033
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	5
Lsp1109I	GCAGC	5 cut(s)	119, 172, 317, 597, 1048
LweI	GCATC	1 cut(s)	138
MabI	ACCWGGT	1 cut(s)	522
MaeI	CTAG	3 cut(s)	69, 797, 812
MaeIII	GTNAC	3 cut(s)	204, 348, 369
MalI	GATC	9 cut(s)	405, 510, 837, 924, 948, 963, 974, 990, 1035
MboI	GATC	9 cut(s)	403, 508, 835, 922, 946, 961, 972, 988, 1033
MboII	GAAGA	8 cut(s)	125, 182, 423, 440, 491, 648, 945, 1003
MflI	RGATCY	1 cut(s)	946
MlyI	GAGTC	2 cut(s)	66, 377
MmeI	TCCRAC	3 cut(s)	508, 868, 924
MseI	TTAA	4 cut(s)	161, 422, 1019, 1081
MslI	CAYNNNNRTG	3 cut(s)	45, 96, 632
MspI	CCGG	4 cut(s)	152, 182, 318, 353
MspR9I	CCNGG	4 cut(s)	182, 327, 436, 524
MvaI	CCWGG	3 cut(s)	327, 436, 524
MwoI	GCNNNNNNNGC	4 cut(s)	574, 591, 693, 806
NciI	CCSGG	1 cut(s)	182
NdeI	CATATG	1 cut(s)	1025
NdeII	GATC	9 cut(s)	403, 508, 835, 922, 946, 961, 972, 988, 1033
NlaIII	CATG	5 cut(s)	44, 220, 541, 592, 808
NlaIV	GGNNCC	4 cut(s)	7, 178, 179, 948
NmeAIII	GCCGAG	1 cut(s)	921
NmuCI	GTSAC	3 cut(s)	204, 348, 369
NspI	RCATGY	2 cut(s)	44, 592
PaeI	GCATGC	1 cut(s)	592
PaeR7I	CTCGAG	1 cut(s)	54
PagI	TCATGA	1 cut(s)	537
PciSI	GCTCTTC	1 cut(s)	195
PfeI	GAWTC	4 cut(s)	72, 139, 534, 707
PkrI	GCNGC	5 cut(s)	109, 187, 307, 587, 1063
PleI	GAGTC	2 cut(s)	65, 376
PpsI	GAGTC	2 cut(s)	65, 376
PpuMI	RGGWCCY	2 cut(s)	177, 520
Psp5II	RGGWCCY	2 cut(s)	177, 520
Psp6I	CCWGG	3 cut(s)	325, 434, 522
PspGI	CCWGG	3 cut(s)	325, 434, 522
PspN4I	GGNNCC	4 cut(s)	7, 178, 179, 948
PspPI	GGNCC	2 cut(s)	177, 520
PspPPI	RGGWCCY	2 cut(s)	177, 520
PstI	CTGCAG	2 cut(s)	307, 587
PsuI	RGATCY	1 cut(s)	946
RsaI	GTAC	1 cut(s)	765
RsaNI	GTAC	1 cut(s)	764
RseI	CAYNNNNRTG	3 cut(s)	45, 96, 632
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	4 cut(s)	161, 422, 1019, 1081
SatI	GCNGC	5 cut(s)	108, 186, 306, 586, 1062
Sau3AI	GATC	9 cut(s)	403, 508, 835, 922, 946, 961, 972, 988, 1033
Sau96I	GGNCC	2 cut(s)	177, 520
SchI	GAGTC	2 cut(s)	66, 377
ScrFI	CCNGG	4 cut(s)	182, 327, 436, 524
SexAI	ACCWGGT	1 cut(s)	522
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	2 cut(s)	303, 583
Sfr274I	CTCGAG	1 cut(s)	54
SinI	GGWCC	2 cut(s)	177, 520
SlaI	CTCGAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	3 cut(s)	45, 96, 632
SmlI	CTYRAG	2 cut(s)	54, 569
SmoI	CTYRAG	2 cut(s)	54, 569
SphI	GCATGC	1 cut(s)	592
SspI	AATATT	1 cut(s)	754
SspMI	CTAG	3 cut(s)	69, 797, 812
StyD4I	CCNGG	4 cut(s)	180, 325, 434, 522
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	1 cut(s)	375
TaqI	TCGA	2 cut(s)	55, 960
TaqII	GACCGA	1 cut(s)	151
TatI	WGTACW	1 cut(s)	763
TfiI	GAWTC	4 cut(s)	72, 139, 534, 707
Tru1I	TTAA	4 cut(s)	161, 422, 1019, 1081
Tru9I	TTAA	4 cut(s)	161, 422, 1019, 1081
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	3 cut(s)	204, 348, 369
TseI	GCWGC	5 cut(s)	107, 185, 305, 585, 1061
Tsp45I	GTSAC	3 cut(s)	204, 348, 369
TspDTI	ATGAA	6 cut(s)	526, 554, 576, 782, 793, 1064
TspGWI	ACGGA	2 cut(s)	923, 939
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	2 cut(s)	177, 520
XapI	RAATTY	3 cut(s)	485, 541, 1052
XbaI	TCTAGA	1 cut(s)	68
XceI	RCATGY	2 cut(s)	44, 592
XhoI	CTCGAG	1 cut(s)	54
XspI	CTAG	3 cut(s)	69, 797, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.