Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0019862

Physical Location & Seq

Genomic Coordinates Forward (+)

7151056 .. 7152330

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00390990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCGGTGGAGAGATTCTTCGAGGCGAGGGAGAAGCGGGAGCTGCTGGAGCTGGTGAGGGCAATTCTGGAAATAAGCGAAAAATTAAAGGCTGCTAGAGAGGCGGCGAGGAATGCGCGGGTTGATGAGGGTGAGCCCGTTGTTTATAGCTTGTTGAGGAAGGAGTGGTCGACCGCTATGATGAGAGGAATTCGGTTTCGGTTTGTAGATTCAAGAGGGTTCTTGGACTCGATGCTTTGGAAGATTGACATGGCCAAGAATATCGAGTTGATTATTTCTAAGTTTCTTTCCAAGGAAGAAGACGAAATCTTGGGAAGATCTAGGAATTTGCTTCTACAATGTGATTTTGCTATTTCTCAAGAGAATACAAGGAGGAAAGGTAAGCGAGGATGGGGCCGCCGGCAATACTCCGAAGATGTTGACTTGCTATTTCTTTCGGAGCGGTGTGTGGTGTCCAAAGCAGCAATTCAATTAATGAAGTTAGTGCACGTGACACTCAAGGATGTCTCGCTTATTTCATCTCATGGCGAGGAAATACTGCAGAGACAAATCCAACTTGTGATTCATAGCTTGAGAGAGGCTCTAGATGGCGCCGATGGATTCCAAAATACCCATCAAATGCAACAATTCCAATCTGCAAAATTTAGTATAGATCGTGTTGTTTTCTTACCGGAGAAAAAGCATGTGTATGGTTCTCGAGTCAATTTTTCTAGAATCACAAAAGACATACTCCATTTAGATGATATGGCAGCAGAAGAAACATTAGAGCTTCAAAGACCGATTCACTTGATGCCGGAAAACTTAACTTCTTTGTTGGGGTCCCCGGCTGCTCTTCAAGTTGAGAGGTCACAAGAGGGCATGACATCTCTTGATGATTTTATACCATCATTACGAAAACTTAGGAAATTGGCAGAATTATTAGATATGCCCTTGAAAACAATCACCGCAGCTTGGGAAACCGGAGAACTGCGAAATGGTGGCTTTACATCGTCGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006810 GO:0006888 GO:0007049 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016192 GO:0022402 GO:0030071 GO:0031577 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048193 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990423 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zw10

Protein Analysis

332

Amino Acids

38.22

Weight (kDa)

8.44

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZW10_C2	PF22766	236 - 322	2.6e-12	ZW10 C-terminal helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019862)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0340121
rosa_roxburghii	Rroxscaffold_4G00312340 Rroxscaffold_5G00356910 Rroxscaffold_6G00390990 Rroxscaffold_6G00395340 Rroxscaffold_7G00200560
rosa_rugosa	RorugMtG0000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	590
AccBSI	CCGCTC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	170
AccII	CGCG	1 cut(s)	118
AciI	CCGC	7 cut(s)	37, 104, 118, 174, 397, 442, 945
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	3 cut(s)	189, 325, 641
AcvI	CACGTG	1 cut(s)	490
AcyI	GRCGYC	1 cut(s)	591
AfiI	CCNNNNNNNGG	1 cut(s)	951
AgsI	TTSAA	5 cut(s)	213, 470, 773, 836, 934
AjuI	GAANNNNNNNTTGG	2 cut(s)	546, 578
AluBI	AGCT	6 cut(s)	43, 52, 150, 570, 769, 950
AluI	AGCT	6 cut(s)	43, 52, 150, 570, 769, 950
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	2 cut(s)	511, 538
Alw44I	GTGCAC	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	696
AoxI	GGCC	2 cut(s)	252, 394
ApaLI	GTGCAC	1 cut(s)	485
ApeKI	GCWGC	6 cut(s)	43, 92, 461, 749, 827, 947
ApoI	RAATTY	3 cut(s)	189, 325, 641
AseI	ATTAAT	1 cut(s)	473
AspLEI	GCGC	2 cut(s)	118, 593
AspS9I	GGNCC	2 cut(s)	394, 819
AsuC2I	CCSGG	1 cut(s)	824
AsuHPI	GGTGA	3 cut(s)	67, 143, 934
AvaI	CYCGRG	1 cut(s)	696
AvaII	GGWCC	1 cut(s)	819
BaeGI	GKGCMC	1 cut(s)	489
BalI	TGGCCA	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	590
BanII	GRGCYC	1 cut(s)	138
BbrPI	CACGTG	1 cut(s)	490
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	6 cut(s)	30, 79, 473, 761, 814, 959
BccI	CCATC	5 cut(s)	384, 581, 590, 621, 892
BcnI	CCSGG	1 cut(s)	824
BcoDI	GTCTC	2 cut(s)	511, 538
BfaI	CTAG	4 cut(s)	96, 321, 584, 711
BfmI	CTRYAG	1 cut(s)	539
BfoI	RGCGCY	1 cut(s)	594
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	8 cut(s)	44, 93, 105, 397, 462, 750, 828, 948
BlsI	GCNGC	8 cut(s)	45, 94, 106, 398, 463, 751, 829, 949
Bme1390I	CCNGG	1 cut(s)	824
Bme18I	GGWCC	1 cut(s)	819
BmeT110I	CYCGRG	1 cut(s)	696
BmgT120I	GGNCC	2 cut(s)	394, 819
BmiI	GGNNCC	4 cut(s)	395, 592, 820, 821
BmrFI	CCNGG	1 cut(s)	824
BmsI	GCATC	2 cut(s)	222, 780
BpiI	GAAGAC	1 cut(s)	306
BplI	GAGNNNNNCTC	2 cut(s)	565, 597
BpmI	CTGGAG	1 cut(s)	68
BpuEI	CTTGAG	3 cut(s)	342, 482, 592
BpuMI	CCSGG	1 cut(s)	824
BsaAI	YACGTR	1 cut(s)	490
BsaHI	GRCGYC	1 cut(s)	591
BsaJI	CCNNGG	2 cut(s)	291, 822
BsaWI	WCCGGW	2 cut(s)	670, 959
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	1 cut(s)	951
Bse118I	RCCGGY	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	291, 822
BseGI	GGATG	2 cut(s)	395, 508
BseLI	CCNNNNNNNGG	1 cut(s)	951
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	6 cut(s)	30, 79, 473, 761, 814, 959
Bsh1236I	CGCG	1 cut(s)	118
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	254, 396
BshNI	GGYRCC	1 cut(s)	590
BsiEI	CGRYCG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	489
BsiHKCI	CYCGRG	1 cut(s)	696
BsiSI	CCGG	5 cut(s)	400, 671, 794, 824, 960
BslFI	GGGAC	1 cut(s)	805
BslI	CCNNNNNNNGG	1 cut(s)	951
BsmAI	GTCTC	2 cut(s)	511, 538
BsmFI	GGGAC	1 cut(s)	805
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	254, 396
BsoBI	CYCGRG	1 cut(s)	696
Bsp1286I	GDGCHC	2 cut(s)	138, 489
Bsp143I	GATC	2 cut(s)	317, 652
BspACI	CCGC	7 cut(s)	37, 104, 118, 174, 397, 442, 945
BspANI	GGCC	2 cut(s)	254, 396
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	4 cut(s)	395, 592, 820, 821
BspMAI	CTGCAG	1 cut(s)	543
BspQI	GCTCTTC	1 cut(s)	837
BspT107I	GGYRCC	1 cut(s)	590
BsrBI	CCGCTC	1 cut(s)	442
BsrFI	RCCGGY	1 cut(s)	399
BssAI	RCCGGY	1 cut(s)	399
BssECI	CCNNGG	2 cut(s)	291, 822
BssMI	GATC	2 cut(s)	317, 652
BssNI	GRCGYC	1 cut(s)	591
BssT1I	CCWWGG	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	837
BstACI	GRCGYC	1 cut(s)	591
BstBAI	YACGTR	1 cut(s)	490
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	2 cut(s)	279, 899
BstF5I	GGATG	2 cut(s)	395, 508
BstFNI	CGCG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	594
BstHHI	GCGC	2 cut(s)	118, 593
BstKTI	GATC	2 cut(s)	320, 655
BstMAI	GTCTC	2 cut(s)	511, 538
BstMBI	GATC	2 cut(s)	317, 652
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 49, 101, 113
BstNSI	RCATGY	1 cut(s)	686
BstSCI	CCNGG	1 cut(s)	822
BstSFI	CTRYAG	1 cut(s)	539
BstSLI	GKGCMC	1 cut(s)	489
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	6 cut(s)	30, 79, 473, 761, 814, 959
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	254, 396
BtsCI	GGATG	2 cut(s)	395, 508
Cac8I	GCNNGC	1 cut(s)	401
CfoI	GCGC	2 cut(s)	118, 593
Cfr10I	RCCGGY	1 cut(s)	399
Cfr13I	GGNCC	2 cut(s)	394, 819
CviAII	CATG	4 cut(s)	250, 524, 683, 859
DdeI	CTNAG	2 cut(s)	279, 899
DinI	GGCGCC	1 cut(s)	592
DpnI	GATC	2 cut(s)	319, 654
DpnII	GATC	2 cut(s)	317, 652
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	837
EarI	CTCTTC	1 cut(s)	837
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	819
Eco72I	CACGTG	1 cut(s)	490
Eco88I	CYCGRG	1 cut(s)	696
EcoO109I	RGGNCCY	1 cut(s)	819
EcoRI	GAATTC	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	138
EgeI	GGCGCC	1 cut(s)	592
EheI	GGCGCC	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	4 cut(s)	253, 527, 686, 862
FaqI	GGGAC	1 cut(s)	805
FatI	CATG	4 cut(s)	249, 523, 682, 858
FauI	CCCGC	2 cut(s)	30, 111
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	8 cut(s)	44, 93, 105, 397, 462, 750, 828, 948
FokI	GGATG	2 cut(s)	402, 515
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	8 cut(s)	44, 93, 105, 397, 462, 750, 828, 948
FspBI	CTAG	4 cut(s)	96, 321, 584, 711
GlaI	GCGC	2 cut(s)	117, 592
GluI	GCNGC	8 cut(s)	44, 93, 105, 397, 462, 750, 828, 948
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	594
HaeIII	GGCC	2 cut(s)	254, 396
HapII	CCGG	5 cut(s)	400, 671, 794, 824, 960
HhaI	GCGC	2 cut(s)	118, 593
Hin1I	GRCGYC	1 cut(s)	591
Hin1II	CATG	4 cut(s)	253, 527, 686, 862
Hin6I	GCGC	2 cut(s)	116, 591
HinP1I	GCGC	2 cut(s)	116, 591
HincII	GTYRAC	2 cut(s)	171, 421
HindII	GTYRAC	2 cut(s)	171, 421
HinfI	GANTC	8 cut(s)	15, 209, 227, 562, 600, 699, 714, 781
HpaII	CCGG	5 cut(s)	400, 671, 794, 824, 960
HphI	GGTGA	3 cut(s)	67, 143, 934
Hpy166II	GTNNAC	3 cut(s)	171, 421, 487
Hpy188I	TCNGA	2 cut(s)	412, 439
Hpy188III	TCNNGA	7 cut(s)	68, 213, 359, 584, 696, 711, 869
Hpy8I	GTNNAC	3 cut(s)	171, 421, 487
Hpy99I	CGWCG	1 cut(s)	994
HpyAV	CCTTC	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	4 cut(s)	487, 541, 622, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 49, 101, 113
HpyF3I	CTNAG	2 cut(s)	279, 899
HpySE526I	ACGT	1 cut(s)	489
Hsp92I	GRCGYC	1 cut(s)	591
Hsp92II	CATG	4 cut(s)	253, 527, 686, 862
HspAI	GCGC	2 cut(s)	116, 591
KasI	GGCGCC	1 cut(s)	590
KflI	GGGWCCC	1 cut(s)	819
KroI	GCCGGC	1 cut(s)	399
KroNI	GCCGGC	1 cut(s)	401
Kzo9I	GATC	2 cut(s)	317, 652
LguI	GCTCTTC	1 cut(s)	837
LmnI	GCTCC	3 cut(s)	40, 49, 439
LpnPI	CCDG	8 cut(s)	32, 38, 53, 413, 684, 807, 837, 973
Lsp1109I	GCAGC	6 cut(s)	30, 79, 473, 761, 814, 959
LweI	GCATC	2 cut(s)	222, 780
MaeI	CTAG	4 cut(s)	96, 321, 584, 711
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	2 cut(s)	490, 846
MalI	GATC	2 cut(s)	319, 654
MbiI	CCGCTC	1 cut(s)	442
MboI	GATC	2 cut(s)	317, 652
MboII	GAAGA	8 cut(s)	10, 253, 308, 311, 327, 425, 767, 824
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	2 cut(s)	138, 489
MlsI	TGGCCA	1 cut(s)	254
MluNI	TGGCCA	1 cut(s)	254
Mly113I	GGCGCC	1 cut(s)	591
MlyI	GAGTC	2 cut(s)	221, 708
MmeI	TCCRAC	1 cut(s)	577
Mox20I	TGGCCA	1 cut(s)	254
MroNI	GCCGGC	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	3 cut(s)	86, 473, 803
MslI	CAYNNNNRTG	2 cut(s)	687, 738
Msp20I	TGGCCA	1 cut(s)	254
MspI	CCGG	5 cut(s)	400, 671, 794, 824, 960
MspR9I	CCNGG	1 cut(s)	824
Mva1269I	GAATGC	1 cut(s)	118
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	4 cut(s)	43, 49, 101, 113
NaeI	GCCGGC	1 cut(s)	401
NarI	GGCGCC	1 cut(s)	591
NciI	CCSGG	1 cut(s)	824
NdeII	GATC	2 cut(s)	317, 652
NgoMIV	GCCGGC	1 cut(s)	399
NlaIII	CATG	4 cut(s)	253, 527, 686, 862
NlaIV	GGNNCC	4 cut(s)	395, 592, 820, 821
NmuCI	GTSAC	2 cut(s)	490, 846
NspI	RCATGY	1 cut(s)	686
PaeR7I	CTCGAG	1 cut(s)	696
PciSI	GCTCTTC	1 cut(s)	837
PctI	GAATGC	1 cut(s)	118
PdiI	GCCGGC	1 cut(s)	401
PfeI	GAWTC	6 cut(s)	15, 209, 562, 600, 714, 781
PkrI	GCNGC	8 cut(s)	45, 94, 106, 398, 463, 751, 829, 949
PleI	GAGTC	2 cut(s)	221, 707
PluTI	GGCGCC	1 cut(s)	594
PmaCI	CACGTG	1 cut(s)	490
PmlI	CACGTG	1 cut(s)	490
PpsI	GAGTC	2 cut(s)	221, 707
Ppu21I	YACGTR	1 cut(s)	490
PpuMI	RGGWCCY	1 cut(s)	819
PshBI	ATTAAT	1 cut(s)	473
Psp5II	RGGWCCY	1 cut(s)	819
PspCI	CACGTG	1 cut(s)	490
PspN4I	GGNNCC	4 cut(s)	395, 592, 820, 821
PspPI	GGNCC	2 cut(s)	394, 819
PspPPI	RGGWCCY	1 cut(s)	819
PstI	CTGCAG	1 cut(s)	543
PsuI	RGATCY	1 cut(s)	317
RseI	CAYNNNNRTG	2 cut(s)	687, 738
SalI	GTCGAC	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	837
SaqAI	TTAA	3 cut(s)	86, 473, 803
SatI	GCNGC	8 cut(s)	44, 93, 105, 397, 462, 750, 828, 948
Sau3AI	GATC	2 cut(s)	317, 652
Sau96I	GGNCC	2 cut(s)	394, 819
SchI	GAGTC	2 cut(s)	221, 708
ScrFI	CCNGG	1 cut(s)	824
SduI	GDGCHC	2 cut(s)	138, 489
SfaNI	GCATC	2 cut(s)	222, 780
SfcI	CTRYAG	1 cut(s)	539
SfoI	GGCGCC	1 cut(s)	592
Sfr274I	CTCGAG	1 cut(s)	696
SinI	GGWCC	1 cut(s)	819
SlaI	CTCGAG	1 cut(s)	696
SmiMI	CAYNNNNRTG	2 cut(s)	687, 738
SmlI	CTYRAG	4 cut(s)	357, 497, 571, 696
SmoI	CTYRAG	4 cut(s)	357, 497, 571, 696
SsiI	CCGC	7 cut(s)	37, 104, 118, 174, 397, 442, 945
SspDI	GGCGCC	1 cut(s)	590
SspMI	CTAG	4 cut(s)	96, 321, 584, 711
StyD4I	CCNGG	1 cut(s)	822
StyI	CCWWGG	1 cut(s)	291
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	6 cut(s)	21, 170, 230, 264, 697, 992
TaqII	GACCGA	1 cut(s)	793
TauI	GCSGC	2 cut(s)	107, 399
TfiI	GAWTC	6 cut(s)	15, 209, 562, 600, 714, 781
Tru1I	TTAA	3 cut(s)	86, 473, 803
Tru9I	TTAA	3 cut(s)	86, 473, 803
TseFI	GTSAC	2 cut(s)	490, 846
TseI	GCWGC	6 cut(s)	43, 92, 461, 749, 827, 947
Tsp45I	GTSAC	2 cut(s)	490, 846
TspDTI	ATGAA	3 cut(s)	491, 507, 554
VneI	GTGCAC	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	819
VspI	ATTAAT	1 cut(s)	473
XapI	RAATTY	3 cut(s)	189, 325, 641
XbaI	TCTAGA	2 cut(s)	583, 710
XceI	RCATGY	1 cut(s)	686
XhoI	CTCGAG	1 cut(s)	696
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	4 cut(s)	96, 321, 584, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.