RchiOBHm_Chr1g0351541

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0018503
Physical Location & Seq
Forward (+)
44813752 .. 44814588
837 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGGTGCAGTGTTTGGTGCGAGGAGAGATAAGGGGTGCTGGCCTGGATGTGTTTGAGAATGAGCCTGATGTTCCTAAAGAGCTCTTTGCATTGGATAATGTTGTACTGTCACCGCATCAAGCTGTTCTTACACATGAAGCTTTCGTGGGTTTGGGTGAATTAGTAACAGGGAATTTGGAAGCATTCTTCTCAAACAAACCGTTACTTTCTCCGGCTGTGATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

75

Amino Acids

8.09

Weight (kDa)

4.47

Isoelectric Point (pI)

24.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh_C PF02826 2 - 41 2.2e-09 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018503)

Species Orthologous Gene IDs
malus_domestica MD02G1197100.v1.1
prunus_persica Prupe.2G150600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0351541 RchiOBHm_Chr5g0049221
rosa_multiflora Rmu_co8043636.1_g000001 Rmu_co8344733.1_g000001 Rmu_sc0003804.1_g000015
rosa_roxburghii Rroxscaffold_5G00377260
rosa_samantha Rh2BG413500
rosa_wichuraiana Rw0G020780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 172
AfaI GTAC 1 cut(s) 105
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 3 cut(s) 82, 122, 140
AluI AGCT 3 cut(s) 82, 122, 140
Alw21I GWGCWC 1 cut(s) 84
AoxI GGCC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 102, 167
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 84
BciT130I CCWGG 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 124
BseBI CCWGG 1 cut(s) 44
BseGI GGATG 1 cut(s) 52
BseRI GAGGAG 1 cut(s) 36
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 212
BsmI GAATGC 1 cut(s) 182
BsnI GGCC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 84
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 108, 201
BstC8I GCNNGC 1 cut(s) 40
BstF5I GGATG 1 cut(s) 52
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BsuRI GGCC 1 cut(s) 42
BtsCI GGATG 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 104
CviAII CATG 1 cut(s) 134
CviJI RGCY 6 cut(s) 42, 64, 82, 122, 140, 215
CviKI_1 RGCY 6 cut(s) 42, 64, 82, 122, 140, 215
CviQI GTAC 1 cut(s) 104
Ecl136II GAGCTC 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 84
FaeI CATG 1 cut(s) 137
FaiI YATR 1 cut(s) 135
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FatI CATG 1 cut(s) 133
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 42
HapII CCGG 1 cut(s) 212
Hin1II CATG 1 cut(s) 137
HindIII AAGCTT 1 cut(s) 138
HpaII CCGG 1 cut(s) 212
HphI GGTGA 2 cut(s) 102, 167
HpyCH4III ACNGT 2 cut(s) 108, 201
HpyCH4V TGCA 2 cut(s) 7, 89
Hsp92II CATG 1 cut(s) 137
LpnPI CCDG 5 cut(s) 24, 29, 56, 78, 153
LweI GCATC 1 cut(s) 124
MaeIII GTNAC 3 cut(s) 108, 163, 201
MboII GAAGA 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 2 cut(s) 158, 172
MnlI CCTC 1 cut(s) 14
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 182
MvaI CCWGG 1 cut(s) 44
NlaIII CATG 1 cut(s) 137
NmuCI GTSAC 1 cut(s) 108
PctI GAATGC 1 cut(s) 182
Psp124BI GAGCTC 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SacI GAGCTC 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 1 cut(s) 84
SetI ASST 3 cut(s) 84, 124, 142
SfaNI GCATC 1 cut(s) 124
Sse9I AATT 2 cut(s) 158, 172
SsiI CCGC 1 cut(s) 113
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 42
TaaI ACNGT 2 cut(s) 108, 201
TasI AATT 2 cut(s) 158, 172
TatI WGTACW 1 cut(s) 103
TscAI CASTG 1 cut(s) 14
TseFI GTSAC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 1 cut(s) 14
XapI RAATTY 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.