Rh2BG413500

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018503
Physical Location & Seq
Reverse (-)
58372703 .. 58373838
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG413500.1

Sequence Viewer

Length: 351 bp
ATGCAAATTGTTGCATGCCCACTTACTGAAGAAACCCGCCACATTATCAATCGTGAAGTCATTGATGCTTTGGGGCCAAAGGGTGTTCTCATTAACATTGGGAGGGGTCATCATGTTGATGAGCCTGAGTTGGTATCTGCACTGCTAGAAGGTCGATTAGGTGGAGCTGGCCTCGATGTGTATCAGAATGAACCAGAAGTACCAGAGCAGCTGTTTGGGATTGAAAATGTGGTGCTCCTGCCTCATGCAGGAAGTGACACTACAGAAACTTGCAATGCAATGGCTGACCTTGTTATTAGGAATCTTGAGGCTCACTTCTTGAACAAACCATTGCTAACACCTGTGGTTTAA

Protein Analysis

116

Amino Acids

12.58

Weight (kDa)

4.71

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh_C PF02826 4 - 84 1.9e-26 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018503)

Species Orthologous Gene IDs
malus_domestica MD02G1197100.v1.1
prunus_persica Prupe.2G150600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0351541 RchiOBHm_Chr5g0049221
rosa_multiflora Rmu_co8043636.1_g000001 Rmu_co8344733.1_g000001 Rmu_sc0003804.1_g000015
rosa_roxburghii Rroxscaffold_5G00377260
rosa_samantha Rh2BG413500
rosa_wichuraiana Rw0G020780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 2 cut(s) 224, 322
AluBI AGCT 2 cut(s) 167, 211
AluI AGCT 2 cut(s) 167, 211
Alw21I GWGCWC 1 cut(s) 237
AoxI GGCC 2 cut(s) 74, 169
ApeKI GCWGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 74
BarI GAAGNNNNNNTAC 2 cut(s) 244, 276
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 220
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 261
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 75
BmsI GCATC 1 cut(s) 55
BplI GAGNNNNNCTC 2 cut(s) 156, 188
BpuEI CTTGAG 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse3DI GCAATG 3 cut(s) 280, 285, 329
Bse8I GATNNNNATC 1 cut(s) 180
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMI GCAATG 3 cut(s) 280, 285, 329
BseMII CTCAG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 220
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 2 cut(s) 76, 171
BsiHKAI GWGCWC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 248
BsnI GGCC 2 cut(s) 76, 171
Bsp1286I GDGCHC 1 cut(s) 237
BspACI CCGC 1 cut(s) 37
BspANI GGCC 2 cut(s) 76, 171
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 75
BsrDI GCAATG 3 cut(s) 280, 285, 329
BstC8I GCNNGC 2 cut(s) 16, 169
BstDEI CTNAG 1 cut(s) 126
BstENI CCTNNNNNAGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 76, 171
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 140
Cac8I GCNNGC 2 cut(s) 16, 169
Cfr13I GGNCC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 200
CviAII CATG 3 cut(s) 15, 113, 245
CviJI RGCY 7 cut(s) 76, 124, 167, 171, 211, 284, 311
CviKI_1 RGCY 7 cut(s) 76, 124, 167, 171, 211, 284, 311
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 48
EcoNI CCTNNNNNAGG 1 cut(s) 246
FaeI CATG 3 cut(s) 18, 116, 248
FaiI YATR 3 cut(s) 16, 114, 246
FatI CATG 3 cut(s) 14, 112, 244
FauI CCCGC 1 cut(s) 44
Fnu4HI GCNGC 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 1 cut(s) 146
GluI GCNGC 1 cut(s) 209
HaeIII GGCC 2 cut(s) 76, 171
Hin1II CATG 3 cut(s) 18, 116, 248
HinfI GANTC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 3 cut(s) 53, 305, 319
HpyAV CCTTC 1 cut(s) 143
HpyCH4V TGCA 6 cut(s) 4, 14, 140, 248, 273, 278
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 3 cut(s) 18, 116, 248
LmnI GCTCC 2 cut(s) 164, 240
LpnPI CCDG 6 cut(s) 138, 153, 207, 216, 234, 251
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 254
MboII GAAGA 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 1 cut(s) 6
MnlI CCTC 4 cut(s) 96, 182, 252, 301
MseI TTAA 2 cut(s) 93, 349
MslI CAYNNNNRTG 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 211
NlaIII CATG 3 cut(s) 18, 116, 248
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 254
NspI RCATGY 1 cut(s) 18
PaeI GCATGC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 301
PkrI GCNGC 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 74
PsrI GAACNNNNNNTAC 2 cut(s) 183, 215
PvuII CAGCTG 1 cut(s) 211
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 2 cut(s) 93, 349
SatI GCNGC 1 cut(s) 209
Sau96I GGNCC 1 cut(s) 74
SduI GDGCHC 1 cut(s) 237
SetI ASST 6 cut(s) 154, 163, 169, 213, 291, 343
SfaNI GCATC 1 cut(s) 55
SfcI CTRYAG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
SphI GCATGC 1 cut(s) 18
Sse9I AATT 1 cut(s) 6
SsiI CCGC 1 cut(s) 37
SspMI CTAG 1 cut(s) 146
TaqI TCGA 2 cut(s) 154, 174
TasI AATT 1 cut(s) 6
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 2 cut(s) 93, 349
Tru9I TTAA 2 cut(s) 93, 349
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 204
TspRI CASTG 1 cut(s) 147
XagI CCTNNNNNAGG 1 cut(s) 246
XceI RCATGY 1 cut(s) 18
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.