Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014802

Physical Location & Seq

Genomic Coordinates Reverse (-)

58722969 .. 58725515

Gene Structure 2547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCGGACGAGGGTTTCAAAGCGTTCCACGTCCCCCGACAAAGCAGAAGAGACCAGCTCCGAGTCGTGAACCTCCTAACCAACCCACCACAGCCACAACTCTCACTATTCACACCCTCCACCATGCCAACCCCCCAACCACCACTTTCCCCACATTTCTCCGACCACGACCACCGTGTTTCATTTGAAGGTGGTGAGTTCAGAAGCTCTGTTCCCCTAGGCCCTTTCACGGGGTACGCTTCCATACTGAAGCGGTCCAGGTTTCTCAAGCCTGCCCAGCAGCTTCTTCAAGACTTCTGCGGGTCGGATCGATCCGATTCGAATCTTCCTCTCCTTAACTGCTTCATTGGAAGAGGAAGAGATCAGATTAGTGGAGTGAGTGATCGGGTCGAGCTTCAGTTAAAGAATTCTAGGCTCACCATTATGCTCGAGGAGGTCTACAAGAGATATAAGTTATACTGCCAGCAGATGGAGTCGGTTGTTGCATCATTTGAAACCATTGATGGGCTTGGAAATGCAGCTCCATACATATCTTTTGCCATCAAAGCCATTTTGAAGCACTTTGGTTGCTTGAAGAATGCCATTTTGGACAAACTTCAATCCAAAGGCAAGAGCAGTGTCGGTGATTTTAGCCATGTTGAAGATGAGATTAGGGGGGTTTCTAGAAGAGGCTTTCATAGCCAAAACCCAAGTCATGAGAACCTGACCAACAACTTTCATCTATCGGAAATTCGATCCCAAAGAGGACTTCCGGAAAATGCAGTGGCTGTGATGAGGACATGGCTTTTTGAACACTTCCTTCACCCTTATCCTAGTGATTCTGAAAAGCAAATGCTAGCTCAACAGACAGGCTTATCAAGAACTCAGGTTTCCAATTGGTTTATCAATTCAAGAGTAAGACTCTGGAAGCCAATGGTGGAAGAAATACACAGCCTTGAAACACAACAAGCTCCAATTGTTTCGGTTTCAGACACAACGAGCAGAAACACAAGAATGGCGCCGTCCTTTCGCTCTTCGTCTTTAGAGAACCGTCTCCATTTGGAGAATCTGCCCCAAACTAAACGCTGTAGAACCAACAAACATTCTGACTTGTCTAAGCAGAGTGAAACACAAAGGAATGCAGGAGATTATGGGAGTTTATCAAGCAATTATTTTCGTATGAATACCGGAAGCCATGAAGGTGAAGTTTCTTTAGCATTAAGCCTTCAAGCCAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0010016 GO:0010051 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010228 GO:0010346 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048439 GO:0048457 GO:0048507 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080006 GO:0080090 GO:0090567 GO:0090698 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905393 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

406

Amino Acids

45.99

Weight (kDa)

9.39

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	82 - 195	1.7e-28	Associated with HOX
Homeobox_KN	PF05920	261 - 300	3e-20	Homeobox KN domain
Homeodomain	PF00046	268 - 300	3.4e-08	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014802)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23561 FvH4_7g23561 FvH4_7g23561 FvH4_7g23561
malus_domestica	MD07G1205600.v1.1
prunus_persica	Prupe.2G241700_v2.0.a1
pyrus_communis	pycom07g19240
rosa_chinensis	RchiOBHm_Chr1g0368731
rosa_laevigata	RLG00000027193
rosa_roxburghii	Rroxscaffold_4G00288320
rosa_rugosa	Rorug01G0344500 Rorug01G0344600 Rorug01G0344700
rosa_samantha	Rh1AG351600 Rh1BG315300 Rh1CG329900 Rh1DG346800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	997
AccB7I	CCANNNNNTGG	1 cut(s)	469
AccI	GTMKAC	1 cut(s)	438
AccIII	TCCGGA	1 cut(s)	751
AciI	CCGC	3 cut(s)	5, 253, 300
AclWI	GGATC	3 cut(s)	306, 315, 729
AcsI	RAATTY	2 cut(s)	406, 729
AcuI	CTGAAG	2 cut(s)	269, 380
AcyI	GRCGYC	1 cut(s)	998
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	4 cut(s)	229, 230, 469, 504
AjiI	CACGTC	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	257
AjuI	GAANNNNNNNTTGG	4 cut(s)	569, 601, 732, 764
AluBI	AGCT	7 cut(s)	58, 207, 283, 394, 521, 839, 950
AluI	AGCT	7 cut(s)	58, 207, 283, 394, 521, 839, 950
Alw26I	GTCTC	2 cut(s)	45, 1037
AlwI	GGATC	3 cut(s)	306, 315, 729
AlwNI	CAGNNNCTG	1 cut(s)	767
Ama87I	CYCGRG	1 cut(s)	428
Aor13HI	TCCGGA	1 cut(s)	751
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	280, 518
ApoI	RAATTY	2 cut(s)	406, 729
ArsI	GACNNNNNNTTYG	2 cut(s)	676, 708
AspA2I	CCTAGG	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	1000
AspS9I	GGNCC	2 cut(s)	221, 255
AsuHPI	GGTGA	5 cut(s)	206, 409, 635, 794, 1193
AsuII	TTCGAA	1 cut(s)	320
AsuNHI	GCTAGC	1 cut(s)	835
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	255
AvrII	CCTAGG	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	997
BbvI	GCAGC	2 cut(s)	292, 530
BccI	CCATC	3 cut(s)	463, 497, 548
BceAI	ACGGC	1 cut(s)	985
BciT130I	CCWGG	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	45, 1037
BfaI	CTAG	5 cut(s)	218, 411, 663, 813, 836
BfmI	CTRYAG	1 cut(s)	1066
BfoI	RGCGCY	1 cut(s)	1001
BisI	GCNGC	2 cut(s)	281, 519
BlnI	CCTAGG	1 cut(s)	217
BlsI	GCNGC	2 cut(s)	282, 520
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	221, 255
BmiI	GGNNCC	1 cut(s)	999
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	1 cut(s)	494
BmtI	GCTAGC	1 cut(s)	839
BplI	GAGNNNNNCTC	4 cut(s)	42, 74, 885, 917
Bpu14I	TTCGAA	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	310
BsaBI	GATNNNNATC	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	998
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	217
BsaWI	WCCGGW	2 cut(s)	751, 1166
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 230, 469, 504
Bse8I	GATNNNNATC	1 cut(s)	321
BseAI	TCCGGA	1 cut(s)	751
BseBI	CCWGG	1 cut(s)	259
BseCI	ATCGAT	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	217
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	4 cut(s)	229, 230, 469, 504
BseMII	CTCAG	1 cut(s)	878
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	2 cut(s)	292, 530
BseYI	CCCAGC	1 cut(s)	276
BshFI	GGCC	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	997
BshVI	ATCGAT	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	2 cut(s)	752, 1167
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	4 cut(s)	229, 230, 469, 504
BsmAI	GTCTC	2 cut(s)	45, 1037
BsmBI	CGTCTC	1 cut(s)	1037
BsmFI	GGGAC	1 cut(s)	17
BsmI	GAATGC	2 cut(s)	583, 1123
BsnI	GGCC	1 cut(s)	222
Bso31I	GGTCTC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	428
Bsp119I	TTCGAA	1 cut(s)	320
Bsp13I	TCCGGA	1 cut(s)	751
Bsp143I	GATC	5 cut(s)	307, 311, 361, 382, 734
BspACI	CCGC	3 cut(s)	5, 253, 300
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	877
BspDI	ATCGAT	1 cut(s)	310
BspEI	TCCGGA	1 cut(s)	751
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	1 cut(s)	999
BspOI	GCTAGC	1 cut(s)	839
BspPI	GGATC	3 cut(s)	306, 315, 729
BspQI	GCTCTTC	1 cut(s)	1018
BspT104I	TTCGAA	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	997
BspTNI	GGTCTC	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	5 cut(s)	307, 311, 361, 382, 734
BssNI	GRCGYC	1 cut(s)	998
BssT1I	CCWWGG	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	259
Bst4CI	ACNGT	2 cut(s)	176, 1031
Bst6I	CTCTTC	5 cut(s)	43, 346, 352, 661, 1018
BstACI	GRCGYC	1 cut(s)	998
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	3 cut(s)	273, 464, 837
BstDEI	CTNAG	2 cut(s)	864, 1095
BstH2I	RGCGCY	1 cut(s)	1001
BstHHI	GCGC	1 cut(s)	1000
BstKTI	GATC	5 cut(s)	310, 314, 364, 385, 737
BstMAI	GTCTC	2 cut(s)	45, 1037
BstMBI	GATC	5 cut(s)	307, 311, 361, 382, 734
BstMWI	GCNNNNNNNGC	3 cut(s)	277, 545, 678
BstNI	CCWGG	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	257
BstSFI	CTRYAG	1 cut(s)	1066
BstV1I	GCAGC	2 cut(s)	292, 530
Bsu15I	ATCGAT	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	310
BtrI	CACGTC	1 cut(s)	31
BtsI	GCAGTG	2 cut(s)	622, 768
BtsIMutI	CAGTG	2 cut(s)	622, 768
Cac8I	GCNNGC	3 cut(s)	273, 464, 837
CaiI	CAGNNNCTG	1 cut(s)	767
CciI	TCATGA	1 cut(s)	694
CfoI	GCGC	1 cut(s)	1000
Cfr13I	GGNCC	2 cut(s)	221, 255
ClaI	ATCGAT	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	5 cut(s)	124, 635, 695, 780, 1175
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	864, 1095
DinI	GGCGCC	1 cut(s)	999
DpnI	GATC	5 cut(s)	309, 313, 363, 384, 736
DpnII	GATC	5 cut(s)	307, 311, 361, 382, 734
Eam1104I	CTCTTC	5 cut(s)	43, 346, 352, 661, 1018
EarI	CTCTTC	5 cut(s)	43, 346, 352, 661, 1018
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	217
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	255
Eco57I	CTGAAG	2 cut(s)	269, 380
Eco88I	CYCGRG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	217
EgeI	GGCGCC	1 cut(s)	999
EheI	GGCGCC	1 cut(s)	999
ErhI	CCWWGG	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	1037
FaeI	CATG	5 cut(s)	127, 638, 698, 783, 1178
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	5 cut(s)	123, 634, 694, 779, 1174
FauI	CCCGC	1 cut(s)	293
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	2 cut(s)	281, 519
Fsp4HI	GCNGC	2 cut(s)	281, 519
FspBI	CTAG	5 cut(s)	218, 411, 663, 813, 836
GlaI	GCGC	1 cut(s)	999
GluI	GCNGC	2 cut(s)	281, 519
GsaI	CCCAGC	1 cut(s)	280
HaeII	RGCGCY	1 cut(s)	1001
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	2 cut(s)	752, 1167
HhaI	GCGC	1 cut(s)	1000
Hin1I	GRCGYC	1 cut(s)	998
Hin1II	CATG	5 cut(s)	127, 638, 698, 783, 1178
Hin6I	GCGC	1 cut(s)	998
HinP1I	GCGC	1 cut(s)	998
HinfI	GANTC	7 cut(s)	63, 317, 322, 473, 818, 900, 1045
HpaII	CCGG	2 cut(s)	752, 1167
HphI	GGTGA	5 cut(s)	206, 409, 635, 794, 1193
Hpy166II	GTNNAC	2 cut(s)	70, 439
Hpy188III	TCNNGA	8 cut(s)	67, 290, 663, 695, 752, 858, 891, 904
Hpy8I	GTNNAC	2 cut(s)	70, 439
HpyAV	CCTTC	4 cut(s)	182, 809, 1172, 1214
HpyCH4III	ACNGT	2 cut(s)	176, 1031
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	4 cut(s)	485, 518, 761, 1121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	277, 545, 678
HpyF3I	CTNAG	2 cut(s)	864, 1095
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	998
Hsp92II	CATG	5 cut(s)	127, 638, 698, 783, 1178
HspAI	GCGC	1 cut(s)	998
KasI	GGCGCC	1 cut(s)	997
Kpn2I	TCCGGA	1 cut(s)	751
Kzo9I	GATC	5 cut(s)	307, 311, 361, 382, 734
LguI	GCTCTTC	1 cut(s)	1018
LmnI	GCTCC	3 cut(s)	63, 526, 955
Lsp1109I	GCAGC	2 cut(s)	292, 530
LweI	GCATC	1 cut(s)	494
MaeI	CTAG	5 cut(s)	218, 411, 663, 813, 836
MaeII	ACGT	1 cut(s)	30
MalI	GATC	5 cut(s)	309, 313, 363, 384, 736
MboI	GATC	5 cut(s)	307, 311, 361, 382, 734
MfeI	CAATTG	2 cut(s)	874, 954
MluCI	AATT	6 cut(s)	406, 729, 874, 886, 954, 1147
Mly113I	GGCGCC	1 cut(s)	998
MlyI	GAGTC	3 cut(s)	72, 482, 894
MmeI	TCCRAC	2 cut(s)	186, 285
MroI	TCCGGA	1 cut(s)	751
MseI	TTAA	3 cut(s)	336, 401, 1199
MslI	CAYNNNNRTG	3 cut(s)	422, 992, 1179
MspI	CCGG	2 cut(s)	752, 1167
MspR9I	CCNGG	1 cut(s)	259
MunI	CAATTG	2 cut(s)	874, 954
Mva1269I	GAATGC	2 cut(s)	583, 1123
MvaI	CCWGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	3 cut(s)	277, 545, 678
NarI	GGCGCC	1 cut(s)	998
NdeII	GATC	5 cut(s)	307, 311, 361, 382, 734
NheI	GCTAGC	1 cut(s)	835
NlaIII	CATG	5 cut(s)	127, 638, 698, 783, 1178
NlaIV	GGNNCC	1 cut(s)	999
NspV	TTCGAA	1 cut(s)	320
PaeR7I	CTCGAG	1 cut(s)	428
PagI	TCATGA	1 cut(s)	694
PciSI	GCTCTTC	1 cut(s)	1018
PctI	GAATGC	2 cut(s)	583, 1123
PfeI	GAWTC	4 cut(s)	317, 322, 818, 1045
PflMI	CCANNNNNTGG	1 cut(s)	469
PkrI	GCNGC	2 cut(s)	282, 520
PleI	GAGTC	3 cut(s)	71, 481, 894
PluTI	GGCGCC	1 cut(s)	1001
PpsI	GAGTC	3 cut(s)	71, 481, 894
Psp6I	CCWGG	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	999
PspPI	GGNCC	2 cut(s)	221, 255
PspXI	VCTCGAGB	1 cut(s)	428
PstNI	CAGNNNCTG	1 cut(s)	767
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	3 cut(s)	422, 992, 1179
SapI	GCTCTTC	1 cut(s)	1018
SaqAI	TTAA	3 cut(s)	336, 401, 1199
SatI	GCNGC	2 cut(s)	281, 519
Sau3AI	GATC	5 cut(s)	307, 311, 361, 382, 734
Sau96I	GGNCC	2 cut(s)	221, 255
SchI	GAGTC	3 cut(s)	72, 482, 894
ScrFI	CCNGG	1 cut(s)	259
SfaNI	GCATC	1 cut(s)	494
SfcI	CTRYAG	1 cut(s)	1066
SfoI	GGCGCC	1 cut(s)	999
Sfr274I	CTCGAG	1 cut(s)	428
SfuI	TTCGAA	1 cut(s)	320
SinI	GGWCC	1 cut(s)	255
SlaI	CTCGAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	3 cut(s)	422, 992, 1179
SmlI	CTYRAG	2 cut(s)	266, 428
SmoI	CTYRAG	2 cut(s)	266, 428
Sse9I	AATT	6 cut(s)	406, 729, 874, 886, 954, 1147
SsiI	CCGC	3 cut(s)	5, 253, 300
SspDI	GGCGCC	1 cut(s)	997
SspMI	CTAG	5 cut(s)	218, 411, 663, 813, 836
StyD4I	CCNGG	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	176, 1031
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	5 cut(s)	310, 320, 390, 429, 733
TasI	AATT	6 cut(s)	406, 729, 874, 886, 954, 1147
TfiI	GAWTC	4 cut(s)	317, 322, 818, 1045
Tru1I	TTAA	3 cut(s)	336, 401, 1199
Tru9I	TTAA	3 cut(s)	336, 401, 1199
TscAI	CASTG	2 cut(s)	622, 768
TseI	GCWGC	2 cut(s)	280, 518
TspDTI	ATGAA	6 cut(s)	171, 334, 665, 707, 1175, 1191
TspRI	CASTG	2 cut(s)	622, 768
Van91I	CCANNNNNTGG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	255
XapI	RAATTY	2 cut(s)	406, 729
XbaI	TCTAGA	1 cut(s)	662
XhoI	CTCGAG	1 cut(s)	428
XmaJI	CCTAGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	5 cut(s)	218, 411, 663, 813, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.