RchiOBHm_Chr1g0370231

Phosphoinositide phospholipase C

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
59730897 .. 59734280
3384 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1479 bp
ATGAATGCGCCTTTGTCGCATTATTACATACACACCGGACATAATTCCTATTTGACCGGAAATCAGCTGAGCAGTGACTGCAGTGATGTGCCGATTAAAGAAGCTCTTCTCAGAGGCGTGAGAGTGATTGAACTTGATATTTGGCCCAATTCGAAGAAAGATGATGTGGATGTACTTCATGGAGGGACATTGACTGCTCCGGTGCCACTTATCAAATGCTTCCAGTGTATAAAGGAACATGCTTTTGTAAAATCCGAGTACCCTGTTGTAATTACCTTAGAGGATCATCTAACCCCTGATCTTCAGGCTAAAGTGGCTGGGATGATTACCCAAACATTTGGAGAGGTGCTGTTTTATCCTCCGGGATCCGAGTGTCTTAAAGACTTTCCATCCCCAGAATCACTAAAGAGAAGGATTATTATATCAACCAAACCACCTTCAGAATATCTTGAGGCTAAAGCTGCCGCCGAAAAAGCTGCAGCAAAAGCTGCCGCAGCTGGAAATGACTTAAAGAGGGGAGCGAGTTTAGCTCCTGATGAGGAAGCTTGGGGTAGCGAAGTCCCGGACCAAAAGGGAGCAGTTGCAGAAGATGACAAGGTGAATGAATTGGATGAAAATAATAGCAATGAGGAGGAAGATGTTGAGGAGTCCAAGTGCCCACAAAATGAGGCACCTGAATATAAGCGTTTGATTGCCATTCATGCTGGGAAACCCAAAGGTGGATTAGTGGAGTGTCTCAAAGTGGATCCTAATAAAGTGCGGCGTCTTAGCTTAAGTGAGCAACAGCTTGAAAAGGCATCAGTAACTTATGGAAAAGAGATAGTCAGATTTACCCAGAGGAATATTCTGAGGGTGTACCCAAAGGGTATACGTGTGGACTCATCAAATTATAACCCAATGATTGGGTGGTCGCATGGTGCTCAAATGGTTGCATTTAATATGCAGGGATATGGAAGATCACTTTGGGTGATGCAAGGAATGTTTAGAGCTAATGGTGGATGCGGCTATGTGAAAAAACCAGATTTTCTGTTAACGACTGGTCCAAATAATGAGGTCTTTGATCCTCAACATAAGTCATCAGTTAAAAAAACTTTGAAGGTGAAAGTCTATATGGGAGAAGGGTGGTATTATGACTTCAAGCACACACACTTTGATGCATATTCGCCGCCTGATTTTTATGCAAGGGTAGGTATTGCTGGAGTTGCTGCAGATACTCAAATGAAGAAAACAAAGACGCTAGAGGATGACTGGATTCCTGCTTGGGACGAATCATTTGAGTTCCCATTAACTTGTCCAGAACTGGCTGTGATTCGCATTGAAGTTCACGAGTACGACATGTCAGAAAAGGATGATTTTGGAGGGCAAACAAGTCTACCACTATCTGAGCTGAAAAAGGGCATCCGAGCAGTTCCTTTACACGACCGTAAGGGAGAGAAGTACAAATCCGTAAAGCTTCTTATGCACTTCGATTTAGTTTGA

Protein Analysis

492

Amino Acids

55.01

Weight (kDa)

5.85

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC-X PF00388 1 - 144 4.1e-51 Phosphatidylinositol-specific phospholipase C, X domain
PI-PLC-Y PF00387 256 - 342 3e-29 Phosphatidylinositol-specific phospholipase C, Y domain
C2 PF00168 364 - 466 4.3e-13 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009798)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 891
AccB1I GGYRCC 2 cut(s) 202, 670
AccB7I CCANNNNNTGG 1 cut(s) 902
AccI GTMKAC 2 cut(s) 868, 1372
AciI CCGC 5 cut(s) 465, 492, 760, 1002, 1166
AclWI GGATC 6 cut(s) 291, 360, 373, 740, 753, 1055
AcuI CTGAAG 2 cut(s) 287, 423
AcyI GRCGYC 1 cut(s) 763
AfaI GTAC 5 cut(s) 174, 260, 857, 1331, 1439
AfiI CCNNNNNNNGG 2 cut(s) 719, 902
AflII CTTAAG 1 cut(s) 772
AflIII ACRYGT 2 cut(s) 871, 1335
AgsI TTSAA 5 cut(s) 131, 791, 1096, 1138, 1319
AjuI GAANNNNNNNTTGG 2 cut(s) 946, 978
Alw21I GWGCWC 1 cut(s) 922
Alw26I GTCTC 1 cut(s) 740
AlwI GGATC 6 cut(s) 291, 360, 373, 740, 753, 1055
AlwNI CAGNNNCTG 1 cut(s) 78
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 6 cut(s) 461, 476, 479, 488, 494, 1205
ArsI GACNNNNNNTTYG 2 cut(s) 1256, 1288
Asp700I GAANNNNTTC 1 cut(s) 105
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 3 cut(s) 144, 565, 1040
AsuC2I CCSGG 2 cut(s) 363, 563
AsuHPI GGTGA 3 cut(s) 610, 979, 1111
AsuII TTCGAA 1 cut(s) 152
AvaII GGWCC 2 cut(s) 565, 1040
BaeGI GKGCMC 1 cut(s) 659
BamHI GGATCC 2 cut(s) 365, 745
BanI GGYRCC 2 cut(s) 202, 670
BarI GAAGNNNNNNTAC 2 cut(s) 1118, 1150
BauI CACGAG 1 cut(s) 1325
Bbv12I GWGCWC 1 cut(s) 922
BbvI GCAGC 6 cut(s) 448, 463, 475, 491, 506, 1192
BccI CCATC 1 cut(s) 397
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BcnI CCSGG 2 cut(s) 363, 563
BcoDI GTCTC 1 cut(s) 740
BfaI CTAG 1 cut(s) 1238
BfmI CTRYAG 3 cut(s) 79, 477, 1206
BfrI CTTAAG 1 cut(s) 772
BlpI GCTNAGC 1 cut(s) 68
Bme1390I CCNGG 2 cut(s) 363, 563
Bme18I GGWCC 2 cut(s) 565, 1040
BmgT120I GGNCC 3 cut(s) 144, 565, 1040
BmiI GGNNCC 4 cut(s) 204, 367, 672, 747
BmrFI CCNGG 2 cut(s) 363, 563
BmsI GCATC 5 cut(s) 806, 960, 989, 1144, 1407
BplI GAGNNNNNCTC 2 cut(s) 514, 546
BpmI CTGGAG 1 cut(s) 1218
Bpu1102I GCTNAGC 1 cut(s) 68
Bpu14I TTCGAA 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 470
BpuMI CCSGG 2 cut(s) 363, 563
BsaAI YACGTR 1 cut(s) 872
BsaHI GRCGYC 1 cut(s) 763
BsaWI WCCGGW 3 cut(s) 35, 56, 199
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 2 cut(s) 719, 902
Bse1I ACTGG 4 cut(s) 223, 1042, 1253, 1305
Bse3DI GCAATG 1 cut(s) 631
BseGI GGATG 8 cut(s) 175, 327, 389, 616, 1004, 1249, 1354, 1398
BseLI CCNNNNNNNGG 2 cut(s) 719, 902
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 4 cut(s) 59, 124, 839, 1374
BseNI ACTGG 4 cut(s) 223, 1042, 1253, 1305
BseRI GAGGAG 2 cut(s) 644, 659
BseSI GKGCMC 1 cut(s) 659
BseXI GCAGC 6 cut(s) 448, 463, 475, 491, 506, 1192
BseYI CCCAGC 2 cut(s) 317, 704
Bsh1285I CGRYCG 1 cut(s) 1423
BshFI GGCC 1 cut(s) 145
BshNI GGYRCC 2 cut(s) 202, 670
BsiEI CGRYCG 1 cut(s) 1423
BsiHKAI GWGCWC 1 cut(s) 922
BsiSI CCGG 5 cut(s) 36, 57, 200, 362, 563
BslFI GGGAC 3 cut(s) 199, 545, 1277
BslI CCNNNNNNNGG 2 cut(s) 719, 902
BsmAI GTCTC 1 cut(s) 740
BsmFI GGGAC 3 cut(s) 199, 545, 1277
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 145
Bsp119I TTCGAA 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 659, 922
Bsp143I GATC 6 cut(s) 283, 298, 365, 745, 956, 1060
Bsp1720I GCTNAGC 1 cut(s) 68
BspACI CCGC 5 cut(s) 465, 492, 760, 1002, 1166
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 4 cut(s) 60, 123, 840, 1375
BspLI GGNNCC 4 cut(s) 204, 367, 672, 747
BspMAI CTGCAG 3 cut(s) 83, 481, 1210
BspPI GGATC 6 cut(s) 291, 360, 373, 740, 753, 1055
BspQI GCTCTTC 1 cut(s) 111
BspT104I TTCGAA 1 cut(s) 152
BspT107I GGYRCC 2 cut(s) 202, 670
BspTI CTTAAG 1 cut(s) 772
BsrDI GCAATG 1 cut(s) 631
BsrI ACTGG 4 cut(s) 223, 1042, 1253, 1305
BssMI GATC 6 cut(s) 283, 298, 365, 745, 956, 1060
BssNAI GTATAC 1 cut(s) 869
BssNI GRCGYC 1 cut(s) 763
BssSI CACGAG 1 cut(s) 1325
Bst1107I GTATAC 1 cut(s) 869
Bst2BI CACGAG 1 cut(s) 1325
Bst4CI ACNGT 1 cut(s) 1424
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 763
BstAFI CTTAAG 1 cut(s) 772
BstAPI GCANNNNNTGC 2 cut(s) 78, 488
BstBAI YACGTR 1 cut(s) 872
BstBI TTCGAA 1 cut(s) 152
BstDEI CTNAG 6 cut(s) 68, 110, 277, 767, 848, 1383
BstF5I GGATG 8 cut(s) 175, 327, 389, 616, 1004, 1249, 1354, 1398
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 6 cut(s) 286, 301, 368, 748, 959, 1063
BstMAI GTCTC 1 cut(s) 740
BstMBI GATC 6 cut(s) 283, 298, 365, 745, 956, 1060
BstMCI CGRYCG 1 cut(s) 1423
BstNSI RCATGY 2 cut(s) 242, 1339
BstSCI CCNGG 2 cut(s) 361, 561
BstSFI CTRYAG 3 cut(s) 79, 477, 1206
BstSLI GKGCMC 1 cut(s) 659
BstV1I GCAGC 6 cut(s) 448, 463, 475, 491, 506, 1192
BstX2I RGATCY 2 cut(s) 365, 745
BstXI CCANNNNNNTGG 1 cut(s) 338
BstYI RGATCY 2 cut(s) 365, 745
BstZ17I GTATAC 1 cut(s) 869
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 8 cut(s) 175, 327, 389, 616, 1004, 1249, 1354, 1398
BtsI GCAGTG 2 cut(s) 79, 88
BtsIMutI CAGTG 3 cut(s) 79, 88, 230
CaiI CAGNNNCTG 1 cut(s) 78
CfoI GCGC 1 cut(s) 10
Cfr13I GGNCC 3 cut(s) 144, 565, 1040
CseI GACGC 2 cut(s) 752, 1243
Csp6I GTAC 5 cut(s) 173, 259, 856, 1330, 1438
CviAII CATG 5 cut(s) 179, 239, 701, 914, 1336
CviQI GTAC 5 cut(s) 173, 259, 856, 1330, 1438
DdeI CTNAG 6 cut(s) 68, 110, 277, 767, 848, 1383
DpnI GATC 6 cut(s) 285, 300, 367, 747, 958, 1062
DpnII GATC 6 cut(s) 283, 298, 365, 745, 956, 1060
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco47I GGWCC 2 cut(s) 565, 1040
Eco57I CTGAAG 2 cut(s) 287, 423
EcoT22I ATGCAT 1 cut(s) 1159
FaeI CATG 5 cut(s) 182, 242, 704, 917, 1339
FalI AAGNNNNNCTT 2 cut(s) 90, 122
FaqI GGGAC 3 cut(s) 199, 545, 1277
FatI CATG 5 cut(s) 178, 238, 700, 913, 1335
FblI GTMKAC 2 cut(s) 868, 1372
FokI GGATG 8 cut(s) 182, 334, 376, 623, 1011, 1256, 1361, 1385
FspBI CTAG 1 cut(s) 1238
GlaI GCGC 1 cut(s) 9
GsaI CCCAGC 2 cut(s) 321, 708
GsuI CTGGAG 1 cut(s) 1218
HaeIII GGCC 1 cut(s) 145
HapII CCGG 5 cut(s) 36, 57, 200, 362, 563
HgaI GACGC 2 cut(s) 752, 1243
HhaI GCGC 1 cut(s) 10
Hin1I GRCGYC 1 cut(s) 763
Hin1II CATG 5 cut(s) 182, 242, 704, 917, 1339
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HincII GTYRAC 1 cut(s) 1032
HindII GTYRAC 1 cut(s) 1032
HindIII AAGCTT 2 cut(s) 543, 1451
HinfI GANTC 6 cut(s) 398, 647, 878, 1252, 1268, 1309
HpaI GTTAAC 1 cut(s) 1032
HpaII CCGG 5 cut(s) 36, 57, 200, 362, 563
HphI GGTGA 3 cut(s) 610, 979, 1111
Hpy166II GTNNAC 6 cut(s) 856, 869, 877, 1032, 1324, 1373
Hpy188I TCNGA 9 cut(s) 113, 256, 370, 442, 827, 849, 1342, 1384, 1403
Hpy188III TCNNGA 4 cut(s) 449, 533, 1295, 1325
Hpy8I GTNNAC 6 cut(s) 856, 869, 877, 1032, 1324, 1373
HpyAV CCTTC 4 cut(s) 405, 447, 1090, 1112
HpyCH4III ACNGT 1 cut(s) 1424
HpyCH4IV ACGT 1 cut(s) 871
HpyF3I CTNAG 6 cut(s) 68, 110, 277, 767, 848, 1383
HpySE526I ACGT 1 cut(s) 871
Hsp92I GRCGYC 1 cut(s) 763
Hsp92II CATG 5 cut(s) 182, 242, 704, 917, 1339
HspAI GCGC 1 cut(s) 8
KspAI GTTAAC 1 cut(s) 1032
Kzo9I GATC 6 cut(s) 283, 298, 365, 745, 956, 1060
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 4 cut(s) 202, 518, 535, 575
Lsp1109I GCAGC 6 cut(s) 448, 463, 475, 491, 506, 1192
LweI GCATC 5 cut(s) 806, 960, 989, 1144, 1407
MaeI CTAG 1 cut(s) 1238
MaeII ACGT 1 cut(s) 871
MaeIII GTNAC 2 cut(s) 74, 802
MalI GATC 6 cut(s) 285, 300, 367, 747, 958, 1062
MboI GATC 6 cut(s) 283, 298, 365, 745, 956, 1060
MboII GAAGA 7 cut(s) 98, 166, 293, 599, 647, 966, 1234
MflI RGATCY 2 cut(s) 365, 745
MhlI GDGCHC 2 cut(s) 659, 922
MluCI AATT 5 cut(s) 43, 148, 270, 605, 886
MlyI GAGTC 2 cut(s) 656, 872
Mph1103I ATGCAT 1 cut(s) 1159
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 8 cut(s) 96, 378, 509, 773, 936, 1031, 1083, 1286
MslI CAYNNNNRTG 1 cut(s) 1152
MspA1I CMGCKG 2 cut(s) 67, 497
MspCI CTTAAG 1 cut(s) 772
MspI CCGG 5 cut(s) 36, 57, 200, 362, 563
MspR9I CCNGG 2 cut(s) 363, 563
Mva1269I GAATGC 1 cut(s) 10
NciI CCSGG 2 cut(s) 363, 563
NdeII GATC 6 cut(s) 283, 298, 365, 745, 956, 1060
NlaIII CATG 5 cut(s) 182, 242, 704, 917, 1339
NlaIV GGNNCC 4 cut(s) 204, 367, 672, 747
NmuCI GTSAC 1 cut(s) 74
NsiI ATGCAT 1 cut(s) 1159
NspI RCATGY 2 cut(s) 242, 1339
NspV TTCGAA 1 cut(s) 152
PciI ACATGT 1 cut(s) 1335
PciSI GCTCTTC 1 cut(s) 111
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 4 cut(s) 398, 1252, 1268, 1309
PflMI CCANNNNNTGG 1 cut(s) 902
PfoI TCCNGGA 2 cut(s) 361, 561
PleI GAGTC 2 cut(s) 655, 872
PpsI GAGTC 2 cut(s) 655, 872
Ppu21I YACGTR 1 cut(s) 872
PscI ACATGT 1 cut(s) 1335
PsiI TTATAA 1 cut(s) 891
PspFI CCCAGC 2 cut(s) 317, 704
PspN4I GGNNCC 4 cut(s) 204, 367, 672, 747
PspPI GGNCC 3 cut(s) 144, 565, 1040
PstI CTGCAG 3 cut(s) 83, 481, 1210
PstNI CAGNNNCTG 1 cut(s) 78
PsuI RGATCY 2 cut(s) 365, 745
PvuII CAGCTG 2 cut(s) 67, 497
RsaI GTAC 5 cut(s) 174, 260, 857, 1331, 1439
RsaNI GTAC 5 cut(s) 173, 259, 856, 1330, 1438
RseI CAYNNNNRTG 1 cut(s) 1152
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 8 cut(s) 96, 378, 509, 773, 936, 1031, 1083, 1286
Sau3AI GATC 6 cut(s) 283, 298, 365, 745, 956, 1060
Sau96I GGNCC 3 cut(s) 144, 565, 1040
SchI GAGTC 2 cut(s) 656, 872
ScrFI CCNGG 2 cut(s) 363, 563
SduI GDGCHC 2 cut(s) 659, 922
SfaNI GCATC 5 cut(s) 806, 960, 989, 1144, 1407
SfcI CTRYAG 3 cut(s) 79, 477, 1206
SfuI TTCGAA 1 cut(s) 152
SinI GGWCC 2 cut(s) 565, 1040
SmiMI CAYNNNNRTG 1 cut(s) 1152
SmlI CTYRAG 2 cut(s) 449, 772
SmoI CTYRAG 2 cut(s) 449, 772
Sse9I AATT 5 cut(s) 43, 148, 270, 605, 886
SsiI CCGC 5 cut(s) 465, 492, 760, 1002, 1166
SspI AATATT 1 cut(s) 844
SspMI CTAG 1 cut(s) 1238
StyD4I CCNGG 2 cut(s) 361, 561
TaaI ACNGT 1 cut(s) 1424
TaiI ACGT 1 cut(s) 874
TaqI TCGA 2 cut(s) 152, 1467
TasI AATT 5 cut(s) 43, 148, 270, 605, 886
TatI WGTACW 2 cut(s) 172, 1437
TauI GCSGC 5 cut(s) 467, 494, 763, 1005, 1168
TfiI GAWTC 4 cut(s) 398, 1252, 1268, 1309
Tru1I TTAA 8 cut(s) 96, 378, 509, 773, 936, 1031, 1083, 1286
Tru9I TTAA 8 cut(s) 96, 378, 509, 773, 936, 1031, 1083, 1286
TscAI CASTG 3 cut(s) 79, 88, 230
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 6 cut(s) 461, 476, 479, 488, 494, 1205
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 6 cut(s) 17, 167, 618, 627, 689, 1235
TspGWI ACGGA 1 cut(s) 1435
TspRI CASTG 3 cut(s) 79, 88, 230
Van91I CCANNNNNTGG 1 cut(s) 902
Vha464I CTTAAG 1 cut(s) 772
VpaK11BI GGWCC 2 cut(s) 565, 1040
XceI RCATGY 2 cut(s) 242, 1339
XcmI CCANNNNNNNNNTGG 1 cut(s) 903
XmiI GTMKAC 2 cut(s) 868, 1372
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 1238
Zsp2I ATGCAT 1 cut(s) 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.