Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017405.1

Orthogroup ID

OG0009798

Physical Location & Seq

Genomic Coordinates Forward (+)

18 .. 3049

Gene Structure 3032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017405.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

atgaatgcgcctttgtcgcattattacatacacaccggacataattcctatttgaccggaaatcagctgagcagtgactgcagtgatgtgccgattaaagaagctcttctcagaggagtgagagtgattgaacttgatatttggcccaattccaagaaagatgatgtggatgtacttcatggagggacattgactgctccggtgccacttatcaaatgcttccagtgtataaaggaacatgcttttgtaaaatccgagtaccctgttgtaattaccttagaggatcatctaacccctgatcttcaggctaaagtggctgggatgattacccaaacatttggagaggtgctgttttatcctccgggatccgagtgtcttaaagactttccatccccagaatcactaaagagaaggattattatatcaaccaaaccaccttcagaatatcttgaggctaaagctgctgccgaaaaagctgcagcaaaagctgccgcagctggaaatgacttaaagaggggagcgagtttagctcctgatgaggaagcttggggtagcgaagtcccggaccaaaagggagcagttgcagaagatgacaagaatgaattggatgaaaataatagcaatgaggaggaagatgttgaggagtccaagtgcccacaaaatgaggcacctgaatataagcgtttgattgccattcatgctgggaaacccaaaggtggattagtggagtgtctcaaagtggatcctaataaagtgcggcgtcttagcttaagtgagcaacagcttgaaaaggcatcagtaacttatggaaaagagatagtcagatttacccagaggaatattctgagggtgtacccaaagggtatacgtgtggactcatcaaattataacccaatgattgggtggtcgcatggtgctcaaatggttgcatttaatatgcagggatatggaagatcactttgggtgatgcaaggaatgtttagagctaatggtggatgcggctatgtgaaaaaaccagattttctgttaacgactggtccaaataatgaggtctttgatcctcaacataagtcatcagttaaaaaaactttgaaggtgaaagtctatatgggagaagggtggtattatgacttcaagcacacacactttgatgcatattcgccgcctgatttttatgcaagggtaggtattgctggagttgctgcagatactcaaatgaagaaaacaaagacgctagaggatgactggattcctgcttgggacgaatcatttgagttcccattaacttgtccagaactggctgtgattcgcattgaagttcacgagtacgacatgtcagaaaaggatgattttggagggcaaacaagtctaccactatctgagctgaaaaagggcatccgagcagttcctttacacgaccgtaagggagagaagtacaaatccgtaaagcttcttatgcacttcgatttagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004629 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007049 GO:0007275 GO:0008081 GO:0008150 GO:0009553 GO:0009555 GO:0009556 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010600 GO:0010601 GO:0010817 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0034293 GO:0042578 GO:0042742 GO:0043207 GO:0043934 GO:0044464 GO:0044703 GO:0046885 GO:0046886 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0065008 GO:0071944 GO:0090354 GO:0090355 GO:0090567 GO:0098542 GO:0099402 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04020 ko04070 ko04919 ko04933 map00562 map01100 map04020 map04070 map04919 map04933

Pfam Domains

Protein Families

C2 EF-hand_like PI-PLC-X PI-PLC-Y

Protein Analysis

491

Amino Acids

54.92

Weight (kDa)

5.85

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08510 AT3G08510 AT3G08510 AT3G08510 AT3G55940
fragaria_vesca	FvH4_7g24471 FvH4_7g24471
malus_domestica	MD01G1153000.v1.1 MD07G1221900.v1.1
prunus_persica	Prupe.2G250100_v2.0.a1
pyrus_communis	pycom01g17060 pycom07g20040
rosa_chinensis	RchiOBHm_Chr1g0370231
rosa_laevigata	RLG00000027067
rosa_multiflora	Rmu_sc0017405.1_g000001 Rmu_sc0030456.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286730
rosa_rugosa	Rorug01G0354700 Rorug01G0354800
rosa_samantha	Rh1AG363500
rosa_wichuraiana	Rw1G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	888
AccB1I	GGYRCC	2 cut(s)	202, 667
AccB7I	CCANNNNNTGG	1 cut(s)	899
AccI	GTMKAC	2 cut(s)	865, 1369
AciI	CCGC	4 cut(s)	492, 757, 999, 1163
AclWI	GGATC	6 cut(s)	291, 360, 373, 737, 750, 1052
AcuI	CTGAAG	2 cut(s)	287, 423
AcyI	GRCGYC	1 cut(s)	760
AfaI	GTAC	5 cut(s)	174, 260, 854, 1328, 1436
AfiI	CCNNNNNNNGG	2 cut(s)	716, 899
AflII	CTTAAG	1 cut(s)	769
AflIII	ACRYGT	2 cut(s)	868, 1332
AgsI	TTSAA	5 cut(s)	131, 788, 1093, 1135, 1316
AjuI	GAANNNNNNNTTGG	2 cut(s)	943, 975
Alw21I	GWGCWC	1 cut(s)	919
Alw26I	GTCTC	1 cut(s)	737
AlwI	GGATC	6 cut(s)	291, 360, 373, 737, 750, 1052
AlwNI	CAGNNNCTG	1 cut(s)	78
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	7 cut(s)	461, 464, 476, 479, 488, 494, 1202
ArsI	GACNNNNNNTTYG	2 cut(s)	1253, 1285
Asp700I	GAANNNNTTC	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	3 cut(s)	144, 565, 1037
AsuC2I	CCSGG	2 cut(s)	363, 563
AsuHPI	GGTGA	2 cut(s)	976, 1108
AvaII	GGWCC	2 cut(s)	565, 1037
BaeGI	GKGCMC	1 cut(s)	656
BamHI	GGATCC	2 cut(s)	365, 742
BanI	GGYRCC	2 cut(s)	202, 667
BarI	GAAGNNNNNNTAC	2 cut(s)	1115, 1147
BauI	CACGAG	1 cut(s)	1322
Bbv12I	GWGCWC	1 cut(s)	919
BbvI	GCAGC	7 cut(s)	448, 451, 463, 475, 491, 506, 1189
BccI	CCATC	1 cut(s)	397
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BcnI	CCSGG	2 cut(s)	363, 563
BcoDI	GTCTC	1 cut(s)	737
BfaI	CTAG	1 cut(s)	1235
BfmI	CTRYAG	3 cut(s)	79, 477, 1203
BfrI	CTTAAG	1 cut(s)	769
BlpI	GCTNAGC	1 cut(s)	68
Bme1390I	CCNGG	2 cut(s)	363, 563
Bme18I	GGWCC	2 cut(s)	565, 1037
BmgT120I	GGNCC	3 cut(s)	144, 565, 1037
BmiI	GGNNCC	4 cut(s)	204, 367, 669, 744
BmrFI	CCNGG	2 cut(s)	363, 563
BmsI	GCATC	5 cut(s)	803, 957, 986, 1141, 1404
BplI	GAGNNNNNCTC	2 cut(s)	514, 546
BpmI	CTGGAG	1 cut(s)	1215
Bpu1102I	GCTNAGC	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	2 cut(s)	363, 563
BsaAI	YACGTR	1 cut(s)	869
BsaHI	GRCGYC	1 cut(s)	760
BsaWI	WCCGGW	3 cut(s)	35, 56, 199
BsaXI	ACNNNNNCTCC	4 cut(s)	108, 138, 635, 665
Bsc4I	CCNNNNNNNGG	2 cut(s)	716, 899
Bse1I	ACTGG	4 cut(s)	223, 1039, 1250, 1302
Bse3DI	GCAATG	1 cut(s)	628
BseGI	GGATG	8 cut(s)	175, 327, 389, 613, 1001, 1246, 1351, 1395
BseLI	CCNNNNNNNGG	2 cut(s)	716, 899
BseMI	GCAATG	1 cut(s)	628
BseMII	CTCAG	4 cut(s)	59, 124, 836, 1371
BseNI	ACTGG	4 cut(s)	223, 1039, 1250, 1302
BseRI	GAGGAG	3 cut(s)	129, 641, 656
BseSI	GKGCMC	1 cut(s)	656
BseXI	GCAGC	7 cut(s)	448, 451, 463, 475, 491, 506, 1189
BseYI	CCCAGC	2 cut(s)	317, 701
Bsh1285I	CGRYCG	1 cut(s)	1420
BshFI	GGCC	1 cut(s)	145
BshNI	GGYRCC	2 cut(s)	202, 667
BsiEI	CGRYCG	1 cut(s)	1420
BsiHKAI	GWGCWC	1 cut(s)	919
BsiSI	CCGG	5 cut(s)	36, 57, 200, 362, 563
BslFI	GGGAC	3 cut(s)	199, 545, 1274
BslI	CCNNNNNNNGG	2 cut(s)	716, 899
BsmAI	GTCTC	1 cut(s)	737
BsmFI	GGGAC	3 cut(s)	199, 545, 1274
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	656, 919
Bsp143I	GATC	6 cut(s)	283, 298, 365, 742, 953, 1057
Bsp1720I	GCTNAGC	1 cut(s)	68
BspACI	CCGC	4 cut(s)	492, 757, 999, 1163
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	4 cut(s)	60, 123, 837, 1372
BspLI	GGNNCC	4 cut(s)	204, 367, 669, 744
BspMAI	CTGCAG	3 cut(s)	83, 481, 1207
BspPI	GGATC	6 cut(s)	291, 360, 373, 737, 750, 1052
BspQI	GCTCTTC	1 cut(s)	111
BspT107I	GGYRCC	2 cut(s)	202, 667
BspTI	CTTAAG	1 cut(s)	769
BsrDI	GCAATG	1 cut(s)	628
BsrI	ACTGG	4 cut(s)	223, 1039, 1250, 1302
BssMI	GATC	6 cut(s)	283, 298, 365, 742, 953, 1057
BssNAI	GTATAC	1 cut(s)	866
BssNI	GRCGYC	1 cut(s)	760
BssSI	CACGAG	1 cut(s)	1322
Bst1107I	GTATAC	1 cut(s)	866
Bst2BI	CACGAG	1 cut(s)	1322
Bst4CI	ACNGT	1 cut(s)	1421
Bst6I	CTCTTC	1 cut(s)	111
BstACI	GRCGYC	1 cut(s)	760
BstAFI	CTTAAG	1 cut(s)	769
BstAPI	GCANNNNNTGC	2 cut(s)	78, 488
BstBAI	YACGTR	1 cut(s)	869
BstDEI	CTNAG	6 cut(s)	68, 110, 277, 764, 845, 1380
BstF5I	GGATG	8 cut(s)	175, 327, 389, 613, 1001, 1246, 1351, 1395
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	6 cut(s)	286, 301, 368, 745, 956, 1060
BstMAI	GTCTC	1 cut(s)	737
BstMBI	GATC	6 cut(s)	283, 298, 365, 742, 953, 1057
BstMCI	CGRYCG	1 cut(s)	1420
BstNSI	RCATGY	2 cut(s)	242, 1336
BstSCI	CCNGG	2 cut(s)	361, 561
BstSFI	CTRYAG	3 cut(s)	79, 477, 1203
BstSLI	GKGCMC	1 cut(s)	656
BstV1I	GCAGC	7 cut(s)	448, 451, 463, 475, 491, 506, 1189
BstX2I	RGATCY	2 cut(s)	365, 742
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	2 cut(s)	365, 742
BstZ17I	GTATAC	1 cut(s)	866
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	8 cut(s)	175, 327, 389, 613, 1001, 1246, 1351, 1395
BtsI	GCAGTG	2 cut(s)	79, 88
BtsIMutI	CAGTG	3 cut(s)	79, 88, 230
CaiI	CAGNNNCTG	1 cut(s)	78
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	3 cut(s)	144, 565, 1037
CseI	GACGC	2 cut(s)	749, 1240
Csp6I	GTAC	5 cut(s)	173, 259, 853, 1327, 1435
CviAII	CATG	5 cut(s)	179, 239, 698, 911, 1333
CviQI	GTAC	5 cut(s)	173, 259, 853, 1327, 1435
DdeI	CTNAG	6 cut(s)	68, 110, 277, 764, 845, 1380
DpnI	GATC	6 cut(s)	285, 300, 367, 744, 955, 1059
DpnII	GATC	6 cut(s)	283, 298, 365, 742, 953, 1057
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	565, 1037
Eco57I	CTGAAG	2 cut(s)	287, 423
EcoT22I	ATGCAT	1 cut(s)	1156
FaeI	CATG	5 cut(s)	182, 242, 701, 914, 1336
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FaqI	GGGAC	3 cut(s)	199, 545, 1274
FatI	CATG	5 cut(s)	178, 238, 697, 910, 1332
FblI	GTMKAC	2 cut(s)	865, 1369
FokI	GGATG	8 cut(s)	182, 334, 376, 620, 1008, 1253, 1358, 1382
FspBI	CTAG	1 cut(s)	1235
GlaI	GCGC	1 cut(s)	9
GsaI	CCCAGC	2 cut(s)	321, 705
GsuI	CTGGAG	1 cut(s)	1215
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	5 cut(s)	36, 57, 200, 362, 563
HgaI	GACGC	2 cut(s)	749, 1240
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	760
Hin1II	CATG	5 cut(s)	182, 242, 701, 914, 1336
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	1029
HindII	GTYRAC	1 cut(s)	1029
HindIII	AAGCTT	2 cut(s)	543, 1448
HinfI	GANTC	6 cut(s)	398, 644, 875, 1249, 1265, 1306
HpaI	GTTAAC	1 cut(s)	1029
HpaII	CCGG	5 cut(s)	36, 57, 200, 362, 563
HphI	GGTGA	2 cut(s)	976, 1108
Hpy166II	GTNNAC	6 cut(s)	853, 866, 874, 1029, 1321, 1370
Hpy188I	TCNGA	9 cut(s)	113, 256, 370, 442, 824, 846, 1339, 1381, 1400
Hpy188III	TCNNGA	4 cut(s)	449, 533, 1292, 1322
Hpy8I	GTNNAC	6 cut(s)	853, 866, 874, 1029, 1321, 1370
HpyAV	CCTTC	4 cut(s)	405, 447, 1087, 1109
HpyCH4III	ACNGT	1 cut(s)	1421
HpyCH4IV	ACGT	1 cut(s)	868
HpyF3I	CTNAG	6 cut(s)	68, 110, 277, 764, 845, 1380
HpySE526I	ACGT	1 cut(s)	868
Hsp92I	GRCGYC	1 cut(s)	760
Hsp92II	CATG	5 cut(s)	182, 242, 701, 914, 1336
HspAI	GCGC	1 cut(s)	8
KspAI	GTTAAC	1 cut(s)	1029
Kzo9I	GATC	6 cut(s)	283, 298, 365, 742, 953, 1057
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	4 cut(s)	202, 518, 535, 575
Lsp1109I	GCAGC	7 cut(s)	448, 451, 463, 475, 491, 506, 1189
LweI	GCATC	5 cut(s)	803, 957, 986, 1141, 1404
MaeI	CTAG	1 cut(s)	1235
MaeII	ACGT	1 cut(s)	868
MaeIII	GTNAC	2 cut(s)	74, 799
MalI	GATC	6 cut(s)	285, 300, 367, 744, 955, 1059
MboI	GATC	6 cut(s)	283, 298, 365, 742, 953, 1057
MboII	GAAGA	6 cut(s)	98, 293, 599, 644, 963, 1231
MflI	RGATCY	2 cut(s)	365, 742
MhlI	GDGCHC	2 cut(s)	656, 919
MluCI	AATT	5 cut(s)	43, 148, 270, 602, 883
MlyI	GAGTC	2 cut(s)	653, 869
Mph1103I	ATGCAT	1 cut(s)	1156
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	8 cut(s)	96, 378, 509, 770, 933, 1028, 1080, 1283
MslI	CAYNNNNRTG	1 cut(s)	1149
MspA1I	CMGCKG	2 cut(s)	67, 497
MspCI	CTTAAG	1 cut(s)	769
MspI	CCGG	5 cut(s)	36, 57, 200, 362, 563
MspR9I	CCNGG	2 cut(s)	363, 563
Mva1269I	GAATGC	1 cut(s)	10
NciI	CCSGG	2 cut(s)	363, 563
NdeII	GATC	6 cut(s)	283, 298, 365, 742, 953, 1057
NlaIII	CATG	5 cut(s)	182, 242, 701, 914, 1336
NlaIV	GGNNCC	4 cut(s)	204, 367, 669, 744
NmuCI	GTSAC	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	1156
NspI	RCATGY	2 cut(s)	242, 1336
PciI	ACATGT	1 cut(s)	1332
PciSI	GCTCTTC	1 cut(s)	111
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	4 cut(s)	398, 1249, 1265, 1306
PflMI	CCANNNNNTGG	1 cut(s)	899
PfoI	TCCNGGA	2 cut(s)	361, 561
PleI	GAGTC	2 cut(s)	652, 869
PpsI	GAGTC	2 cut(s)	652, 869
Ppu21I	YACGTR	1 cut(s)	869
PscI	ACATGT	1 cut(s)	1332
PsiI	TTATAA	1 cut(s)	888
PspFI	CCCAGC	2 cut(s)	317, 701
PspN4I	GGNNCC	4 cut(s)	204, 367, 669, 744
PspPI	GGNCC	3 cut(s)	144, 565, 1037
PstI	CTGCAG	3 cut(s)	83, 481, 1207
PstNI	CAGNNNCTG	1 cut(s)	78
PsuI	RGATCY	2 cut(s)	365, 742
PvuII	CAGCTG	2 cut(s)	67, 497
RsaI	GTAC	5 cut(s)	174, 260, 854, 1328, 1436
RsaNI	GTAC	5 cut(s)	173, 259, 853, 1327, 1435
RseI	CAYNNNNRTG	1 cut(s)	1149
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	8 cut(s)	96, 378, 509, 770, 933, 1028, 1080, 1283
Sau3AI	GATC	6 cut(s)	283, 298, 365, 742, 953, 1057
Sau96I	GGNCC	3 cut(s)	144, 565, 1037
SchI	GAGTC	2 cut(s)	653, 869
ScrFI	CCNGG	2 cut(s)	363, 563
SduI	GDGCHC	2 cut(s)	656, 919
SfaNI	GCATC	5 cut(s)	803, 957, 986, 1141, 1404
SfcI	CTRYAG	3 cut(s)	79, 477, 1203
SinI	GGWCC	2 cut(s)	565, 1037
SmiMI	CAYNNNNRTG	1 cut(s)	1149
SmlI	CTYRAG	2 cut(s)	449, 769
SmoI	CTYRAG	2 cut(s)	449, 769
Sse9I	AATT	5 cut(s)	43, 148, 270, 602, 883
SsiI	CCGC	4 cut(s)	492, 757, 999, 1163
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	1 cut(s)	1235
StyD4I	CCNGG	2 cut(s)	361, 561
TaaI	ACNGT	1 cut(s)	1421
TaiI	ACGT	1 cut(s)	871
TaqI	TCGA	1 cut(s)	1464
TasI	AATT	5 cut(s)	43, 148, 270, 602, 883
TatI	WGTACW	2 cut(s)	172, 1434
TauI	GCSGC	4 cut(s)	494, 760, 1002, 1165
TfiI	GAWTC	4 cut(s)	398, 1249, 1265, 1306
Tru1I	TTAA	8 cut(s)	96, 378, 509, 770, 933, 1028, 1080, 1283
Tru9I	TTAA	8 cut(s)	96, 378, 509, 770, 933, 1028, 1080, 1283
TscAI	CASTG	3 cut(s)	79, 88, 230
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	7 cut(s)	461, 464, 476, 479, 488, 494, 1202
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	6 cut(s)	17, 167, 615, 624, 686, 1232
TspGWI	ACGGA	1 cut(s)	1432
TspRI	CASTG	3 cut(s)	79, 88, 230
Van91I	CCANNNNNTGG	1 cut(s)	899
Vha464I	CTTAAG	1 cut(s)	769
VpaK11BI	GGWCC	2 cut(s)	565, 1037
XceI	RCATGY	2 cut(s)	242, 1336
XcmI	CCANNNNNNNNNTGG	1 cut(s)	900
XmiI	GTMKAC	2 cut(s)	865, 1369
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	1 cut(s)	1235
Zsp2I	ATGCAT	1 cut(s)	1156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.