RchiOBHm_Chr1g0373181

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0018080
Physical Location & Seq
Reverse (-)
61558331 .. 61560703
2373 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1542 bp
ATGGCACTTGCATTTTTGTGGAAAAAGCAACATCTTTGGCCCTTTTCGGTGCTCGAATCTGATGACCTGAGAGTCTCTTATGAGTTAGTCCAAAAGCTCCCGATACCTGAAGACACAAAGAAATTTGTTTACGCAGTTCGTGAGCCCGAAACTCAGTCAGTAATTTATGTACTTTGTGTTCAAGATTTCTCAGAAAGGTCAGCATGGGATGCTGAACTTCTGATTAGGGAGATTAAACCTGATGCTGTGATTGTCAAGGAGGATGTTTCGAACCTGAAAGACTTGCAAGTGCAAGAGAGAATGTTGAGTGTTGAAAATCCTGTTCCAGTTTCGAGTTTTGAAGTTATCAAACGATGTTTTAAGGAAGAGTTGAGAGCCGAAACGTATAAGCGCCTTGCGCAAACTTCTGTTTTACAGGAAATCTTTGGGGTTGGCTCTAGTGGACAGTGGTCTGTAGCCAAGAGGGCAGCTCAACATGTTGGCTCATCACTAATGCTGCTTGGAACTCCATTGACTCTGTCCCATTGGAGTGCTACATCAGGTGATTCAGATGGTAAACGTAATGGAATGAGCAGGTTTCAAGACTTGGCTAGTAGTTTGGTTCCGCAAAAAGTGCAATGTGGATGGAGTTGTCTTTCTGATGTGGAATCAAATTTACCAGAAGTTAATCAGCCAGCACAATGCAGTTTTGAGGTCCCCCAATTTGTGCAATCGATTGATCCATTTTTTGTAGCAATTCATGATAAACTTGTGCATGGTTTTCCATCTCTGGGGACTGCTCTGGATCATGTAAGGAAGATATATGATTGTGTCAACAGAGGTGAAGCTGTAGATGCTCTAGTGGTTTCAGAAGTGTACCCTTTTCGGAGAGTGGTGGAGCTGTTGCGATGTATTCATAATGATGAAGGTCGACTCCCAATCAATAGAATGAAAACCATCCTAAGTAGGATTGAGTTTTCTGAGCTTGCATTAGAGGACAAGAAACATGCTCTCTCTGCACAAGCTCTTCGAAGCTTGACTAAAAGATTCAAGACCATAGTAGCAGTTGTGGATGCGAAGGACTTGCAAGGTCTTAGAAAATACTGGTACACTCCAATTCCTCCAGAATACAAGGATCTAGCTGCACAGATTGTTACAAGATATGAAGGTGAGGCAGCTATGCCAGTTCTACAAGGGTCCTCATTCTTGGAACTTGTTCAAGCTTCCATTATCATGAATATCAAAGGAAAACTGAGAATTCCTACGCCTTCTGATTTTGTGATACGGGCTGCAGAGAACACCAGCTGGTGGGCAATGAGAACAGCATTCTATGAAATGATGAGAGATGGGAAAGTGCATCCCCTTCCTTTGAGCAGGTTGGTGGTTAGTATGTCGATTCGTATGAAGTTGTTTTGGCATAAAGTTGGGATCAAATGTGCTGCTGATTCGCTTCCTGCAGCTCCATCAGTTGCTCGTCTGGGTCGCGGTATCAAAAGTTTAAGCCATGCAGCTCAGGTTGTCAAGTATACCCATGAAAGTTTAGGATACCGTCCTCCTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

513

Amino Acids

57.88

Weight (kDa)

8.82

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018080)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26521 FvH4_7g26521
rosa_chinensis RchiOBHm_Chr1g0373181
rosa_laevigata RLG00000026845
rosa_multiflora Rmu_sc0000170.1_g000014
rosa_rugosa Rorug01G0376600
rosa_samantha Rh1AG385000 Rh1BG348900 Rh1CG362400 Rh1DG379900
rosa_wichuraiana Rw1G033960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
Acc16I TGCGCA 1 cut(s) 399
Acc36I ACCTGC 2 cut(s) 564, 1344
AccB7I CCANNNNNTGG 1 cut(s) 1287
AccI GTMKAC 2 cut(s) 910, 1505
AccII CGCG 1 cut(s) 1464
AciI CCGC 2 cut(s) 605, 1464
AclWI GGATC 4 cut(s) 713, 792, 1122, 1415
AcsI RAATTY 3 cut(s) 122, 652, 1236
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 3 cut(s) 171, 857, 1088
AfiI CCNNNNNNNGG 2 cut(s) 770, 1287
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 6 cut(s) 182, 314, 341, 581, 1030, 1199
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 4 cut(s) 713, 792, 1122, 1415
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 8 cut(s) 467, 496, 1121, 1154, 1268, 1418, 1436, 1487
ApoI RAATTY 3 cut(s) 122, 652, 1236
Asp700I GAANNNNTTC 1 cut(s) 1194
AspA2I CCTAGG 1 cut(s) 1535
AspLEI GCGC 2 cut(s) 393, 400
AspS9I GGNCC 3 cut(s) 39, 694, 1176
AsuHPI GGTGA 3 cut(s) 554, 833, 1160
AsuII TTCGAA 2 cut(s) 269, 1009
AvaII GGWCC 2 cut(s) 694, 1176
AvrII CCTAGG 1 cut(s) 1535
BanII GRGCYC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 8 cut(s) 479, 483, 1108, 1166, 1255, 1405, 1448, 1499
BccI CCATC 6 cut(s) 545, 618, 772, 944, 1319, 1450
BcgI CGANNNNNNTGC 2 cut(s) 1045, 1079
BciVI GTATCC 1 cut(s) 1517
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 5 cut(s) 438, 591, 839, 1118, 1536
BfmI CTRYAG 4 cut(s) 453, 828, 1269, 1434
BfoI RGCGCY 1 cut(s) 394
BfuAI ACCTGC 2 cut(s) 564, 1344
BfuI GTATCC 1 cut(s) 1517
BglI GCCNNNNNGGC 1 cut(s) 464
BisI GCNGC 8 cut(s) 468, 497, 1122, 1155, 1269, 1419, 1437, 1488
BlnI CCTAGG 1 cut(s) 1535
BlsI GCNGC 8 cut(s) 469, 498, 1123, 1156, 1270, 1420, 1438, 1489
Bme18I GGWCC 2 cut(s) 694, 1176
BmgT120I GGNCC 3 cut(s) 39, 694, 1176
BmiI GGNNCC 3 cut(s) 603, 696, 1177
BmsI GCATC 5 cut(s) 199, 232, 823, 1042, 1345
BoxI GACNNNNGTC 1 cut(s) 448
BpiI GAAGAC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 454, 486
BpmI CTGGAG 1 cut(s) 1086
Bpu10I CCTNAGC 1 cut(s) 1491
Bpu14I TTCGAA 2 cut(s) 269, 1009
Bsa29I ATCGAT 1 cut(s) 713
BsaJI CCNNGG 1 cut(s) 1535
Bsc4I CCNNNNNNNGG 2 cut(s) 770, 1287
Bse1I ACTGG 3 cut(s) 326, 1088, 1163
Bse3DI GCAATG 2 cut(s) 623, 1299
BseCI ATCGAT 1 cut(s) 713
BseDI CCNNGG 1 cut(s) 1535
BseGI GGATG 6 cut(s) 214, 268, 629, 936, 1057, 1336
BseLI CCNNNNNNNGG 2 cut(s) 770, 1287
BseMI GCAATG 2 cut(s) 623, 1299
BseMII CTCAG 6 cut(s) 59, 167, 204, 951, 1223, 1505
BseNI ACTGG 3 cut(s) 326, 1088, 1163
BseXI GCAGC 8 cut(s) 479, 483, 1108, 1166, 1255, 1405, 1448, 1499
BsgI GTGCAG 2 cut(s) 981, 1107
Bsh1236I CGCG 1 cut(s) 1464
BshFI GGCC 1 cut(s) 40
BshVI ATCGAT 1 cut(s) 713
BsiHKAI GWGCWC 1 cut(s) 54
BslFI GGGAC 3 cut(s) 505, 680, 787
BslI CCNNNNNNNGG 2 cut(s) 770, 1287
BsmAI GTCTC 1 cut(s) 79
BsmFI GGGAC 3 cut(s) 505, 680, 787
BsmI GAATGC 1 cut(s) 1304
BsnI GGCC 1 cut(s) 40
Bsp119I TTCGAA 2 cut(s) 269, 1009
Bsp1286I GDGCHC 2 cut(s) 54, 147
Bsp143I GATC 4 cut(s) 718, 784, 1114, 1407
BspACI CCGC 2 cut(s) 605, 1464
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 6 cut(s) 60, 166, 203, 952, 1224, 1504
BspDI ATCGAT 1 cut(s) 713
BspFNI CGCG 1 cut(s) 1464
BspHI TCATGA 2 cut(s) 739, 1212
BspLI GGNNCC 3 cut(s) 603, 696, 1177
BspMAI CTGCAG 2 cut(s) 1273, 1438
BspMI ACCTGC 2 cut(s) 564, 1344
BspPI GGATC 4 cut(s) 713, 792, 1122, 1415
BspQI GCTCTTC 1 cut(s) 1011
BspT104I TTCGAA 2 cut(s) 269, 1009
BsrDI GCAATG 2 cut(s) 623, 1299
BsrI ACTGG 3 cut(s) 326, 1088, 1163
BssECI CCNNGG 1 cut(s) 1535
BssMI GATC 4 cut(s) 718, 784, 1114, 1407
BssNAI GTATAC 1 cut(s) 1506
BssT1I CCWWGG 1 cut(s) 1535
Bst1107I GTATAC 1 cut(s) 1506
Bst4CI ACNGT 2 cut(s) 447, 1529
Bst6I CTCTTC 2 cut(s) 360, 1011
BstAPI GCANNNNNTGC 2 cut(s) 209, 613
BstBI TTCGAA 2 cut(s) 269, 1009
BstC8I GCNNGC 2 cut(s) 675, 966
BstDEI CTNAG 8 cut(s) 68, 153, 190, 941, 960, 1073, 1232, 1491
BstF5I GGATG 6 cut(s) 214, 268, 629, 936, 1057, 1336
BstFNI CGCG 1 cut(s) 1464
BstH2I RGCGCY 1 cut(s) 394
BstHHI GCGC 2 cut(s) 393, 400
BstKTI GATC 4 cut(s) 721, 787, 1117, 1410
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 4 cut(s) 718, 784, 1114, 1407
BstMWI GCNNNNNNNGC 6 cut(s) 209, 397, 464, 613, 833, 995
BstNSI RCATGY 2 cut(s) 479, 989
BstPAI GACNNNNGTC 1 cut(s) 448
BstSFI CTRYAG 4 cut(s) 453, 828, 1269, 1434
BstUI CGCG 1 cut(s) 1464
BstV1I GCAGC 8 cut(s) 479, 483, 1108, 1166, 1255, 1405, 1448, 1499
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 1114
BstYI RGATCY 1 cut(s) 1114
BstZ17I GTATAC 1 cut(s) 1506
Bsu15I ATCGAT 1 cut(s) 713
BsuI GTATCC 1 cut(s) 1517
BsuRI GGCC 1 cut(s) 40
BsuTUI ATCGAT 1 cut(s) 713
BtgZI GCGATG 1 cut(s) 901
BtsCI GGATG 6 cut(s) 214, 268, 629, 936, 1057, 1336
BtsIMutI CAGTG 1 cut(s) 452
BveI ACCTGC 2 cut(s) 564, 1344
Cac8I GCNNGC 2 cut(s) 675, 966
CciI TCATGA 2 cut(s) 739, 1212
CfoI GCGC 2 cut(s) 393, 400
Cfr13I GGNCC 3 cut(s) 39, 694, 1176
ClaI ATCGAT 1 cut(s) 713
Csp6I GTAC 3 cut(s) 170, 856, 1087
CviAII CATG 9 cut(s) 204, 476, 740, 755, 788, 986, 1213, 1484, 1511
CviQI GTAC 3 cut(s) 170, 856, 1087
DdeI CTNAG 8 cut(s) 68, 153, 190, 941, 960, 1073, 1232, 1491
DpnI GATC 4 cut(s) 720, 786, 1116, 1409
DpnII GATC 4 cut(s) 718, 784, 1114, 1407
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Eam1104I CTCTTC 2 cut(s) 360, 1011
EarI CTCTTC 2 cut(s) 360, 1011
Eco130I CCWWGG 1 cut(s) 1535
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 694, 1176
Eco57I CTGAAG 1 cut(s) 129
EcoO109I RGGNCCY 2 cut(s) 694, 1176
EcoRI GAATTC 1 cut(s) 1236
EcoT14I CCWWGG 1 cut(s) 1535
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 1535
FaeI CATG 9 cut(s) 207, 479, 743, 758, 791, 989, 1216, 1487, 1514
FaqI GGGAC 3 cut(s) 505, 680, 787
FatI CATG 9 cut(s) 203, 475, 739, 754, 787, 985, 1212, 1483, 1510
FblI GTMKAC 2 cut(s) 910, 1505
Fnu4HI GCNGC 8 cut(s) 468, 497, 1122, 1155, 1269, 1419, 1437, 1488
FokI GGATG 6 cut(s) 221, 275, 636, 923, 1064, 1323
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 8 cut(s) 468, 497, 1122, 1155, 1269, 1419, 1437, 1488
FspBI CTAG 5 cut(s) 438, 591, 839, 1118, 1536
FspI TGCGCA 1 cut(s) 399
GlaI GCGC 2 cut(s) 392, 399
GluI GCNGC 8 cut(s) 468, 497, 1122, 1155, 1269, 1419, 1437, 1488
GsuI CTGGAG 1 cut(s) 1086
HaeII RGCGCY 1 cut(s) 394
HaeIII GGCC 1 cut(s) 40
HhaI GCGC 2 cut(s) 393, 400
Hin1II CATG 9 cut(s) 207, 479, 743, 758, 791, 989, 1216, 1487, 1514
Hin6I GCGC 2 cut(s) 391, 398
HinP1I GCGC 2 cut(s) 391, 398
HincII GTYRAC 2 cut(s) 814, 911
HindII GTYRAC 2 cut(s) 814, 911
HindIII AAGCTT 2 cut(s) 1012, 1200
HinfI GANTC 9 cut(s) 56, 72, 514, 545, 647, 912, 1026, 1375, 1424
HphI GGTGA 3 cut(s) 554, 833, 1160
Hpy166II GTNNAC 8 cut(s) 130, 443, 557, 814, 856, 911, 1089, 1506
Hpy188I TCNGA 9 cut(s) 61, 193, 222, 550, 640, 850, 867, 961, 1252
Hpy188III TCNNGA 9 cut(s) 100, 140, 182, 581, 740, 782, 1030, 1103, 1213
Hpy8I GTNNAC 8 cut(s) 130, 443, 557, 814, 856, 911, 1089, 1506
HpyAV CCTTC 5 cut(s) 899, 1051, 1139, 1257, 1352
HpyCH4III ACNGT 2 cut(s) 447, 1529
HpyCH4IV ACGT 2 cut(s) 383, 559
HpyF10VI GCNNNNNNNGC 6 cut(s) 209, 397, 464, 613, 833, 995
HpyF3I CTNAG 8 cut(s) 68, 153, 190, 941, 960, 1073, 1232, 1491
HpySE526I ACGT 2 cut(s) 383, 559
Hsp92II CATG 9 cut(s) 207, 479, 743, 758, 791, 989, 1216, 1487, 1514
HspAI GCGC 2 cut(s) 391, 398
Kzo9I GATC 4 cut(s) 718, 784, 1114, 1407
LguI GCTCTTC 1 cut(s) 1011
LmnI GCTCC 3 cut(s) 102, 877, 1444
Lsp1109I GCAGC 8 cut(s) 479, 483, 1108, 1166, 1255, 1405, 1448, 1499
LweI GCATC 5 cut(s) 199, 232, 823, 1042, 1345
MaeI CTAG 5 cut(s) 438, 591, 839, 1118, 1536
MaeII ACGT 2 cut(s) 383, 559
MaeIII GTNAC 1 cut(s) 1132
MalI GATC 4 cut(s) 720, 786, 1116, 1409
MboI GATC 4 cut(s) 718, 784, 1114, 1407
MboII GAAGA 4 cut(s) 122, 377, 808, 998
MflI RGATCY 1 cut(s) 1114
MhlI GDGCHC 2 cut(s) 54, 147
MluCI AATT 7 cut(s) 122, 162, 652, 701, 735, 1095, 1236
MlyI GAGTC 3 cut(s) 81, 508, 906
MnlI CCTC 9 cut(s) 253, 456, 685, 812, 967, 1110, 1144, 1189, 1542
MroXI GAANNNNTTC 1 cut(s) 1194
MseI TTAA 4 cut(s) 234, 360, 666, 1478
MslI CAYNNNNRTG 4 cut(s) 16, 528, 900, 1211
MspA1I CMGCKG 1 cut(s) 1284
Mva1269I GAATGC 1 cut(s) 1304
MvnI CGCG 1 cut(s) 1464
MwoI GCNNNNNNNGC 6 cut(s) 209, 397, 464, 613, 833, 995
NdeII GATC 4 cut(s) 718, 784, 1114, 1407
NlaIII CATG 9 cut(s) 207, 479, 743, 758, 791, 989, 1216, 1487, 1514
NlaIV GGNNCC 3 cut(s) 603, 696, 1177
NsbI TGCGCA 1 cut(s) 399
NspI RCATGY 2 cut(s) 479, 989
NspV TTCGAA 2 cut(s) 269, 1009
PagI TCATGA 2 cut(s) 739, 1212
PciI ACATGT 1 cut(s) 475
PciSI GCTCTTC 1 cut(s) 1011
PctI GAATGC 1 cut(s) 1304
PdmI GAANNNNTTC 1 cut(s) 1194
PfeI GAWTC 6 cut(s) 56, 545, 647, 1026, 1375, 1424
PflFI GACNNNGTC 1 cut(s) 517
PflMI CCANNNNNTGG 1 cut(s) 1287
PkrI GCNGC 8 cut(s) 469, 498, 1123, 1156, 1270, 1420, 1438, 1489
PleI GAGTC 3 cut(s) 80, 508, 906
PpsI GAGTC 3 cut(s) 80, 508, 906
PpuMI RGGWCCY 2 cut(s) 694, 1176
PscI ACATGT 1 cut(s) 475
PshAI GACNNNNGTC 1 cut(s) 448
Psp5II RGGWCCY 2 cut(s) 694, 1176
PspN4I GGNNCC 3 cut(s) 603, 696, 1177
PspPI GGNCC 3 cut(s) 39, 694, 1176
PspPPI RGGWCCY 2 cut(s) 694, 1176
PsrI GAACNNNNNNTAC 2 cut(s) 162, 194
PstI CTGCAG 2 cut(s) 1273, 1438
PsuI RGATCY 1 cut(s) 1114
PsyI GACNNNGTC 1 cut(s) 517
PvuII CAGCTG 1 cut(s) 1284
RsaI GTAC 3 cut(s) 171, 857, 1088
RsaNI GTAC 3 cut(s) 170, 856, 1087
RseI CAYNNNNRTG 4 cut(s) 16, 528, 900, 1211
SalI GTCGAC 1 cut(s) 909
SapI GCTCTTC 1 cut(s) 1011
SaqAI TTAA 4 cut(s) 234, 360, 666, 1478
SatI GCNGC 8 cut(s) 468, 497, 1122, 1155, 1269, 1419, 1437, 1488
Sau3AI GATC 4 cut(s) 718, 784, 1114, 1407
Sau96I GGNCC 3 cut(s) 39, 694, 1176
SchI GAGTC 3 cut(s) 81, 508, 906
SduI GDGCHC 2 cut(s) 54, 147
SfaNI GCATC 5 cut(s) 199, 232, 823, 1042, 1345
SfcI CTRYAG 4 cut(s) 453, 828, 1269, 1434
SfuI TTCGAA 2 cut(s) 269, 1009
SinI GGWCC 2 cut(s) 694, 1176
SmiMI CAYNNNNRTG 4 cut(s) 16, 528, 900, 1211
Sse9I AATT 7 cut(s) 122, 162, 652, 701, 735, 1095, 1236
SsiI CCGC 2 cut(s) 605, 1464
SspMI CTAG 5 cut(s) 438, 591, 839, 1118, 1536
StyI CCWWGG 1 cut(s) 1535
TaaI ACNGT 2 cut(s) 447, 1529
TaiI ACGT 2 cut(s) 386, 562
TaqI TCGA 7 cut(s) 54, 269, 332, 713, 910, 1009, 1373
TasI AATT 7 cut(s) 122, 162, 652, 701, 735, 1095, 1236
TatI WGTACW 1 cut(s) 169
TfiI GAWTC 6 cut(s) 56, 545, 647, 1026, 1375, 1424
Tru1I TTAA 4 cut(s) 234, 360, 666, 1478
Tru9I TTAA 4 cut(s) 234, 360, 666, 1478
TscAI CASTG 1 cut(s) 452
TseI GCWGC 8 cut(s) 467, 496, 1121, 1154, 1268, 1418, 1436, 1487
TspDTI ATGAA 9 cut(s) 728, 884, 918, 944, 1158, 1229, 1326, 1397, 1527
TspRI CASTG 1 cut(s) 452
Tth111I GACNNNGTC 1 cut(s) 517
Van91I CCANNNNNTGG 1 cut(s) 1287
VpaK11BI GGWCC 2 cut(s) 694, 1176
XapI RAATTY 3 cut(s) 122, 652, 1236
XceI RCATGY 2 cut(s) 479, 989
XmaJI CCTAGG 1 cut(s) 1535
XmiI GTMKAC 2 cut(s) 910, 1505
XmnI GAANNNNTTC 1 cut(s) 1194
XspI CTAG 5 cut(s) 438, 591, 839, 1118, 1536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.