RLG00000026845

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018080
Physical Location & Seq
Forward (+)
6484677 .. 6486152
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026845

Sequence Viewer

Length: 1476 bp
ATGAGTTGGTCCAAAAGCTCCGGCCCGATACCTGAAGACACAAAGAAATTTGTTTACGCAGTTCGTGAGCCCAAAACTCAGTCAGTAATTTATATACTTTGTGTTCAAGATTTCTCAGAAAGGTCAGCATGGGATGCTGAGCTTCTGATTAGGGAGATTAAACCTGATGCTGTGATTGTCAAGGAGGATGTTTCGAACCTGAATGACTTGCAAGTGCAAGAGAGAACGTTGAGAGTTGAAAATCCTGTTCCAGTTTCGAGTTTTGAAATCATCAAACGATGTTTTAAGGAAGAGTTGAGAGCCGAAACGTATAAGCGCCTTGCACAAATTTCTGTTTTACAAGAAATCTTTGGGGTTGGCTCTAGTGGACAGTGGTCTGTAGCCAAGAGGGCAGCTCAACATGCTGGCTCATCACTAATGCTGCTTGGAACTCCAATGATTCTGTCCCATTGGAGTGCTACATCAGGTGATTCAGATGGTAAACGTAATGGAGTGAGCAGGTTTCAAGGCTTGGCTAGTAGTTTGGTTCCGCAAAAAGTGCAATGCGGACGGAGTTGTCTTTCTGATGTGGAATCAAATTTACCAGAAGTTAATCAGCCAGCACAATGCAGTTTTGAGGTCCCCCAATTTGTGCAATCGATTGATCCATTTTTTGTAGCAATTCATGATAAACTTGTGCATGTTTTTCCATCTCTGGGGACTGCTCTGGATCATGTAAGAAAGATATATGATCGTGTCAACAGAGGTCAAGCTGTACATGCTCTAGTGGTTTCAGAAGTCTACCCTTTTCAGAGAGTGGTGGAGCTGTTGCGATGTATTGATAATGATAAAGGTCGACTCCCAATCAATAGAATGAATACCATCCTAAGTAGGATTGAGTTTTCTAAGCTTGCATTAGAGGACAAGAAACATGCTGTCTCTGCACAAGCTCTTCAAAGCTTGACTAAAAGATTCAAGACCATAGTAGCAGTTGTGGACGCTAAGGACTTGCAAGGTCTTAGAAAATACTGGTACACTCCTATTCCTCCAGAATACAAGGATCTAGCTGCACAGATTGTTACAAGATATGAAGGTGAGGCAGCTAGGCCAGTTCTACAAGGGTCCTCATTCTCGGAACTTGTTCAAGCTTCCATTATCATGAATGTCAAACCAAAACTGAGAATTCCTACGCCTTCTGATTTTGTGATACGGGCTGTAGAGAACACCAGCTGGTGGGCAATGAGAACAGCATTCTATGAAATGATGGAAGATGGGAAAGTGCATCCCCTTCCTTTGAGAAGATTGGTGGTTAGTATGTCGATTCGTATGAAGTTGTTTTGGCATAAAGTTGGGATCAAATGTGCTGCTGATTCCCTTCCTGCAGCTCCATCAGTTGCCCGTCTGGGTCGCGGTATCAAAAGTTTAAGCCATGCAGCTCAGGTTGTCAAGTATACCCATGAAAGTTTAGGATACCGTCCTACTAGCGTAGTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

492

Amino Acids

55.07

Weight (kDa)

9.36

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018080)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26521 FvH4_7g26521
rosa_chinensis RchiOBHm_Chr1g0373181
rosa_laevigata RLG00000026845
rosa_multiflora Rmu_sc0000170.1_g000014
rosa_rugosa Rorug01G0376600
rosa_samantha Rh1AG385000 Rh1BG348900 Rh1CG362400 Rh1DG379900
rosa_wichuraiana Rw1G033960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 555
Acc36I ACCTGC 1 cut(s) 489
AccB7I CCANNNNNTGG 1 cut(s) 1212
AccI GTMKAC 3 cut(s) 780, 835, 1430
AccII CGCG 1 cut(s) 1389
AciI CCGC 3 cut(s) 530, 546, 1389
AclI AACGTT 1 cut(s) 227
AclWI GGATC 4 cut(s) 638, 717, 1047, 1340
AcsI RAATTY 4 cut(s) 47, 327, 577, 1161
AcuI CTGAAG 1 cut(s) 54
AfaI GTAC 2 cut(s) 756, 1013
AfiI CCNNNNNNNGG 2 cut(s) 695, 1212
AgsI TTSAA 8 cut(s) 107, 239, 266, 506, 935, 955, 1124, 1472
Alw26I GTCTC 1 cut(s) 922
AlwI GGATC 4 cut(s) 638, 717, 1047, 1340
AoxI GGCC 2 cut(s) 22, 1085
ApeKI GCWGC 7 cut(s) 392, 421, 1046, 1079, 1343, 1361, 1412
ApoI RAATTY 4 cut(s) 47, 327, 577, 1161
Asp700I GAANNNNTTC 1 cut(s) 1119
AspLEI GCGC 1 cut(s) 318
AspS9I GGNCC 4 cut(s) 9, 23, 619, 1101
AsuHPI GGTGA 2 cut(s) 479, 1085
AsuII TTCGAA 1 cut(s) 194
AvaII GGWCC 3 cut(s) 9, 619, 1101
BanII GRGCYC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 42
BbvI GCAGC 7 cut(s) 404, 408, 1033, 1091, 1330, 1373, 1424
BccI CCATC 6 cut(s) 470, 697, 869, 1237, 1244, 1375
BciVI GTATCC 1 cut(s) 1442
BcoDI GTCTC 1 cut(s) 922
BfaI CTAG 6 cut(s) 363, 516, 764, 1043, 1083, 1461
BfmI CTRYAG 3 cut(s) 378, 1194, 1359
BfoI RGCGCY 1 cut(s) 319
BfuAI ACCTGC 1 cut(s) 489
BfuI GTATCC 1 cut(s) 1442
BglI GCCNNNNNGGC 1 cut(s) 389
BisI GCNGC 7 cut(s) 393, 422, 1047, 1080, 1344, 1362, 1413
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 7 cut(s) 394, 423, 1048, 1081, 1345, 1363, 1414
Bme18I GGWCC 3 cut(s) 9, 619, 1101
BmgT120I GGNCC 4 cut(s) 9, 23, 619, 1101
BmiI GGNNCC 3 cut(s) 528, 621, 1102
BmsI GCATC 3 cut(s) 124, 157, 1270
BoxI GACNNNNGTC 1 cut(s) 373
BpiI GAAGAC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 379, 411
BpmI CTGGAG 1 cut(s) 1011
Bpu10I CCTNAGC 2 cut(s) 981, 1416
Bpu1102I GCTNAGC 1 cut(s) 138
Bpu14I TTCGAA 1 cut(s) 194
Bsa29I ATCGAT 1 cut(s) 638
Bsc4I CCNNNNNNNGG 2 cut(s) 695, 1212
Bse1I ACTGG 3 cut(s) 251, 1013, 1088
Bse3DI GCAATG 2 cut(s) 548, 1224
BseCI ATCGAT 1 cut(s) 638
BseGI GGATG 4 cut(s) 139, 193, 861, 1261
BseLI CCNNNNNNNGG 2 cut(s) 695, 1212
BseMI GCAATG 2 cut(s) 548, 1224
BseMII CTCAG 5 cut(s) 92, 129, 129, 1148, 1430
BseNI ACTGG 3 cut(s) 251, 1013, 1088
BseXI GCAGC 7 cut(s) 404, 408, 1033, 1091, 1330, 1373, 1424
BsgI GTGCAG 2 cut(s) 906, 1032
Bsh1236I CGCG 1 cut(s) 1389
BshFI GGCC 2 cut(s) 24, 1087
BshVI ATCGAT 1 cut(s) 638
BsiSI CCGG 1 cut(s) 21
BslFI GGGAC 3 cut(s) 430, 605, 712
BslI CCNNNNNNNGG 2 cut(s) 695, 1212
BsmAI GTCTC 1 cut(s) 922
BsmFI GGGAC 3 cut(s) 430, 605, 712
BsmI GAATGC 1 cut(s) 1229
BsnI GGCC 2 cut(s) 24, 1087
Bsp119I TTCGAA 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 72
Bsp1407I TGTACA 1 cut(s) 754
Bsp143I GATC 5 cut(s) 643, 709, 730, 1039, 1332
Bsp1720I GCTNAGC 1 cut(s) 138
BspACI CCGC 3 cut(s) 530, 546, 1389
BspANI GGCC 2 cut(s) 24, 1087
BspCNI CTCAG 5 cut(s) 91, 128, 130, 1149, 1429
BspDI ATCGAT 1 cut(s) 638
BspFNI CGCG 1 cut(s) 1389
BspHI TCATGA 2 cut(s) 664, 1137
BspLI GGNNCC 3 cut(s) 528, 621, 1102
BspMAI CTGCAG 1 cut(s) 1363
BspMI ACCTGC 1 cut(s) 489
BspPI GGATC 4 cut(s) 638, 717, 1047, 1340
BspQI GCTCTTC 1 cut(s) 936
BspT104I TTCGAA 1 cut(s) 194
BsrDI GCAATG 2 cut(s) 548, 1224
BsrGI TGTACA 1 cut(s) 754
BsrI ACTGG 3 cut(s) 251, 1013, 1088
BssMI GATC 5 cut(s) 643, 709, 730, 1039, 1332
BssNAI GTATAC 1 cut(s) 1431
Bst1107I GTATAC 1 cut(s) 1431
Bst4CI ACNGT 2 cut(s) 372, 1454
Bst6I CTCTTC 2 cut(s) 285, 936
BstAPI GCANNNNNTGC 2 cut(s) 134, 538
BstAUI TGTACA 1 cut(s) 754
BstBI TTCGAA 1 cut(s) 194
BstC8I GCNNGC 3 cut(s) 406, 600, 891
BstDEI CTNAG 9 cut(s) 78, 115, 138, 866, 885, 981, 998, 1157, 1416
BstF5I GGATG 4 cut(s) 139, 193, 861, 1261
BstFNI CGCG 1 cut(s) 1389
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 5 cut(s) 646, 712, 733, 1042, 1335
BstMAI GTCTC 1 cut(s) 922
BstMBI GATC 5 cut(s) 643, 709, 730, 1039, 1332
BstMWI GCNNNNNNNGC 6 cut(s) 134, 389, 401, 538, 758, 920
BstNSI RCATGY 4 cut(s) 404, 683, 761, 914
BstPAI GACNNNNGTC 1 cut(s) 373
BstSFI CTRYAG 3 cut(s) 378, 1194, 1359
BstUI CGCG 1 cut(s) 1389
BstV1I GCAGC 7 cut(s) 404, 408, 1033, 1091, 1330, 1373, 1424
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 1039
BstYI RGATCY 1 cut(s) 1039
BstZ17I GTATAC 1 cut(s) 1431
Bsu15I ATCGAT 1 cut(s) 638
BsuI GTATCC 1 cut(s) 1442
BsuRI GGCC 2 cut(s) 24, 1087
BsuTUI ATCGAT 1 cut(s) 638
BtgZI GCGATG 1 cut(s) 826
BtsCI GGATG 4 cut(s) 139, 193, 861, 1261
BtsIMutI CAGTG 1 cut(s) 377
BveI ACCTGC 1 cut(s) 489
Cac8I GCNNGC 3 cut(s) 406, 600, 891
CciI TCATGA 2 cut(s) 664, 1137
CfoI GCGC 1 cut(s) 318
Cfr13I GGNCC 4 cut(s) 9, 23, 619, 1101
ClaI ATCGAT 1 cut(s) 638
CseI GACGC 1 cut(s) 986
Csp6I GTAC 2 cut(s) 755, 1012
CviQI GTAC 2 cut(s) 755, 1012
DdeI CTNAG 9 cut(s) 78, 115, 138, 866, 885, 981, 998, 1157, 1416
DpnI GATC 5 cut(s) 645, 711, 732, 1041, 1334
DpnII GATC 5 cut(s) 643, 709, 730, 1039, 1332
DrdI GACNNNNNNGTC 1 cut(s) 555
DseDI GACNNNNNNGTC 1 cut(s) 555
Eam1104I CTCTTC 2 cut(s) 285, 936
EarI CTCTTC 2 cut(s) 285, 936
Eco24I GRGCYC 1 cut(s) 72
Eco47I GGWCC 3 cut(s) 9, 619, 1101
Eco57I CTGAAG 1 cut(s) 54
EcoO109I RGGNCCY 2 cut(s) 619, 1101
EcoRI GAATTC 1 cut(s) 1161
EcoT38I GRGCYC 1 cut(s) 72
FaqI GGGAC 3 cut(s) 430, 605, 712
FblI GTMKAC 3 cut(s) 780, 835, 1430
Fnu4HI GCNGC 7 cut(s) 393, 422, 1047, 1080, 1344, 1362, 1413
FokI GGATG 4 cut(s) 146, 200, 848, 1248
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 7 cut(s) 393, 422, 1047, 1080, 1344, 1362, 1413
FspBI CTAG 6 cut(s) 363, 516, 764, 1043, 1083, 1461
GlaI GCGC 1 cut(s) 317
GluI GCNGC 7 cut(s) 393, 422, 1047, 1080, 1344, 1362, 1413
GsuI CTGGAG 1 cut(s) 1011
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 2 cut(s) 24, 1087
HapII CCGG 1 cut(s) 21
HgaI GACGC 1 cut(s) 986
HhaI GCGC 1 cut(s) 318
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HincII GTYRAC 2 cut(s) 739, 836
HindII GTYRAC 2 cut(s) 739, 836
HindIII AAGCTT 3 cut(s) 887, 937, 1125
HinfI GANTC 7 cut(s) 439, 470, 572, 837, 951, 1300, 1349
HpaII CCGG 1 cut(s) 21
HphI GGTGA 2 cut(s) 479, 1085
Hpy166II GTNNAC 9 cut(s) 55, 368, 482, 739, 781, 836, 976, 1014, 1431
Hpy188I TCNGA 8 cut(s) 118, 147, 475, 565, 775, 792, 1114, 1177
Hpy188III TCNNGA 7 cut(s) 65, 107, 665, 707, 955, 1028, 1138
Hpy8I GTNNAC 9 cut(s) 55, 368, 482, 739, 781, 836, 976, 1014, 1431
HpyAV CCTTC 4 cut(s) 1064, 1182, 1277, 1364
HpyCH4III ACNGT 2 cut(s) 372, 1454
HpyCH4IV ACGT 3 cut(s) 227, 308, 484
HpyF10VI GCNNNNNNNGC 6 cut(s) 134, 389, 401, 538, 758, 920
HpyF3I CTNAG 9 cut(s) 78, 115, 138, 866, 885, 981, 998, 1157, 1416
HpySE526I ACGT 3 cut(s) 227, 308, 484
HspAI GCGC 1 cut(s) 316
Kzo9I GATC 5 cut(s) 643, 709, 730, 1039, 1332
LguI GCTCTTC 1 cut(s) 936
LmnI GCTCC 3 cut(s) 23, 802, 1369
Lsp1109I GCAGC 7 cut(s) 404, 408, 1033, 1091, 1330, 1373, 1424
LweI GCATC 3 cut(s) 124, 157, 1270
MaeI CTAG 6 cut(s) 363, 516, 764, 1043, 1083, 1461
MaeII ACGT 3 cut(s) 227, 308, 484
MaeIII GTNAC 1 cut(s) 1057
MalI GATC 5 cut(s) 645, 711, 732, 1041, 1334
MboI GATC 5 cut(s) 643, 709, 730, 1039, 1332
MboII GAAGA 5 cut(s) 47, 302, 923, 1259, 1290
MflI RGATCY 1 cut(s) 1039
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 7 cut(s) 47, 87, 327, 577, 626, 660, 1161
MlyI GAGTC 1 cut(s) 831
MnlI CCTC 8 cut(s) 178, 381, 610, 737, 892, 1035, 1069, 1114
MroXI GAANNNNTTC 1 cut(s) 1119
MseI TTAA 4 cut(s) 159, 285, 591, 1403
MslI CAYNNNNRTG 2 cut(s) 453, 1136
MspA1I CMGCKG 1 cut(s) 1209
MspI CCGG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 1229
MvnI CGCG 1 cut(s) 1389
MwoI GCNNNNNNNGC 6 cut(s) 134, 389, 401, 538, 758, 920
NdeII GATC 5 cut(s) 643, 709, 730, 1039, 1332
NlaIV GGNNCC 3 cut(s) 528, 621, 1102
NspI RCATGY 4 cut(s) 404, 683, 761, 914
NspV TTCGAA 1 cut(s) 194
PagI TCATGA 2 cut(s) 664, 1137
PciSI GCTCTTC 1 cut(s) 936
PctI GAATGC 1 cut(s) 1229
PdmI GAANNNNTTC 1 cut(s) 1119
PfeI GAWTC 6 cut(s) 439, 470, 572, 951, 1300, 1349
PflMI CCANNNNNTGG 1 cut(s) 1212
PkrI GCNGC 7 cut(s) 394, 423, 1048, 1081, 1345, 1363, 1414
PleI GAGTC 1 cut(s) 831
PpsI GAGTC 1 cut(s) 831
PpuMI RGGWCCY 2 cut(s) 619, 1101
PshAI GACNNNNGTC 1 cut(s) 373
Psp1406I AACGTT 1 cut(s) 227
Psp5II RGGWCCY 2 cut(s) 619, 1101
PspN4I GGNNCC 3 cut(s) 528, 621, 1102
PspPI GGNCC 4 cut(s) 9, 23, 619, 1101
PspPPI RGGWCCY 2 cut(s) 619, 1101
PstI CTGCAG 1 cut(s) 1363
PsuI RGATCY 1 cut(s) 1039
PvuII CAGCTG 1 cut(s) 1209
RsaI GTAC 2 cut(s) 756, 1013
RsaNI GTAC 2 cut(s) 755, 1012
RseI CAYNNNNRTG 2 cut(s) 453, 1136
SalI GTCGAC 1 cut(s) 834
SapI GCTCTTC 1 cut(s) 936
SaqAI TTAA 4 cut(s) 159, 285, 591, 1403
SatI GCNGC 7 cut(s) 393, 422, 1047, 1080, 1344, 1362, 1413
Sau3AI GATC 5 cut(s) 643, 709, 730, 1039, 1332
Sau96I GGNCC 4 cut(s) 9, 23, 619, 1101
SchI GAGTC 1 cut(s) 831
SduI GDGCHC 1 cut(s) 72
SfaNI GCATC 3 cut(s) 124, 157, 1270
SfcI CTRYAG 3 cut(s) 378, 1194, 1359
SfuI TTCGAA 1 cut(s) 194
SinI GGWCC 3 cut(s) 9, 619, 1101
SmiMI CAYNNNNRTG 2 cut(s) 453, 1136
Sse9I AATT 7 cut(s) 47, 87, 327, 577, 626, 660, 1161
SsiI CCGC 3 cut(s) 530, 546, 1389
SspMI CTAG 6 cut(s) 363, 516, 764, 1043, 1083, 1461
TaaI ACNGT 2 cut(s) 372, 1454
TaiI ACGT 3 cut(s) 230, 311, 487
TaqI TCGA 5 cut(s) 194, 257, 638, 835, 1298
TasI AATT 7 cut(s) 47, 87, 327, 577, 626, 660, 1161
TatI WGTACW 1 cut(s) 754
TfiI GAWTC 6 cut(s) 439, 470, 572, 951, 1300, 1349
Tru1I TTAA 4 cut(s) 159, 285, 591, 1403
Tru9I TTAA 4 cut(s) 159, 285, 591, 1403
TscAI CASTG 1 cut(s) 377
TseI GCWGC 7 cut(s) 392, 421, 1046, 1079, 1343, 1361, 1412
TspDTI ATGAA 7 cut(s) 653, 869, 1083, 1154, 1251, 1322, 1452
TspGWI ACGGA 1 cut(s) 565
TspRI CASTG 1 cut(s) 377
Van91I CCANNNNNTGG 1 cut(s) 1212
VpaK11BI GGWCC 3 cut(s) 9, 619, 1101
XapI RAATTY 4 cut(s) 47, 327, 577, 1161
XceI RCATGY 4 cut(s) 404, 683, 761, 914
XmiI GTMKAC 3 cut(s) 780, 835, 1430
XmnI GAANNNNTTC 1 cut(s) 1119
XspI CTAG 6 cut(s) 363, 516, 764, 1043, 1083, 1461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.