Rorug01G0376600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018080
Physical Location & Seq
Forward (+)
49037776 .. 49038048
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0376600.1

Sequence Viewer

Length: 273 bp
ATGAGATCCGGAAGCACACGAACACCAAATTCAGAGGACGGCAACGTCGGCCTTGTTAGTGTCAGCGACCGGAGCTTGCTCGTAGACGTTGAGCATCTACACGCACTGGTGGAGCGACGTGAGCTTGTTGGCACCGTGGATCTTCGAGTCGCAGGTCAGACACAGGTAGCCGAGTCGATGAGGCAAAAGAAGGCCGCCGACAACAACTTGCCGGTTTGTAGGGCTTGGGGGAGAGGCCCGGCAAGAAATCTCAATGCCGAAGTACGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.79

Weight (kDa)

9.29

Isoelectric Point (pI)

29.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018080)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26521 FvH4_7g26521
rosa_chinensis RchiOBHm_Chr1g0373181
rosa_laevigata RLG00000026845
rosa_multiflora Rmu_sc0000170.1_g000014
rosa_rugosa Rorug01G0376600
rosa_samantha Rh1AG385000 Rh1BG348900 Rh1CG362400 Rh1DG379900
rosa_wichuraiana Rw1G033960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
Acc36I ACCTGC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 84
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 1 cut(s) 195
AclWI GGATC 1 cut(s) 147
AcsI RAATTY 1 cut(s) 28
AfaI GTAC 1 cut(s) 264
AjiI CACGTC 1 cut(s) 119
AluBI AGCT 2 cut(s) 75, 124
AluI AGCT 2 cut(s) 75, 124
AlwI GGATC 1 cut(s) 147
Aor13HI TCCGGA 1 cut(s) 8
AoxI GGCC 3 cut(s) 49, 192, 235
ApoI RAATTY 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 239
BanI GGYRCC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 55
BcnI CCSGG 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 1 cut(s) 239
BmgBI CACGTC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 1 cut(s) 103
BpuMI CCSGG 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 2 cut(s) 8, 69
Bse118I RCCGGY 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 111
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 3 cut(s) 51, 194, 237
BshNI GGYRCC 1 cut(s) 131
BsiEI CGRYCG 1 cut(s) 70
BsiSI CCGG 4 cut(s) 9, 70, 212, 239
BsnI GGCC 3 cut(s) 51, 194, 237
Bsp13I TCCGGA 1 cut(s) 8
Bsp143I GATC 2 cut(s) 5, 139
BspACI CCGC 1 cut(s) 195
BspANI GGCC 3 cut(s) 51, 194, 237
BspEI TCCGGA 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 133
BspMI ACCTGC 1 cut(s) 143
BspPI GGATC 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 211
BsrI ACTGG 1 cut(s) 111
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 2 cut(s) 5, 139
Bst4CI ACNGT 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 135
BstKTI GATC 2 cut(s) 8, 142
BstMBI GATC 2 cut(s) 5, 139
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 48, 72, 121
BstSCI CCNGG 1 cut(s) 237
BstX2I RGATCY 2 cut(s) 5, 139
BstYI RGATCY 2 cut(s) 5, 139
BsuRI GGCC 3 cut(s) 51, 194, 237
BtgI CCRYGG 1 cut(s) 135
BtrI CACGTC 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 104
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 263
CviAII CATG 1 cut(s) 270
CviJI RGCY 7 cut(s) 51, 75, 124, 170, 194, 224, 237
CviKI_1 RGCY 7 cut(s) 51, 75, 124, 170, 194, 224, 237
CviQI GTAC 1 cut(s) 263
DpnI GATC 2 cut(s) 7, 141
DpnII GATC 2 cut(s) 5, 139
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
FaeI CATG 1 cut(s) 273
FaiI YATR 1 cut(s) 271
FatI CATG 1 cut(s) 269
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 195
HaeIII GGCC 3 cut(s) 51, 194, 237
HapII CCGG 4 cut(s) 9, 70, 212, 239
Hin1II CATG 1 cut(s) 273
HinfI GANTC 2 cut(s) 147, 173
HpaII CCGG 4 cut(s) 9, 70, 212, 239
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 34, 159
Hpy188III TCNNGA 1 cut(s) 9
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 2 cut(s) 50, 120
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 3 cut(s) 45, 87, 118
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 72, 121
HpySE526I ACGT 3 cut(s) 45, 87, 118
Hsp92II CATG 1 cut(s) 273
Kpn2I TCCGGA 1 cut(s) 8
Kzo9I GATC 2 cut(s) 5, 139
LmnI GCTCC 2 cut(s) 72, 112
LpnPI CCDG 7 cut(s) 22, 83, 92, 138, 149, 225, 252
LweI GCATC 1 cut(s) 103
MaeII ACGT 3 cut(s) 45, 87, 118
MalI GATC 2 cut(s) 7, 141
MboI GATC 2 cut(s) 5, 139
MboII GAAGA 1 cut(s) 134
MflI RGATCY 2 cut(s) 5, 139
MluCI AATT 1 cut(s) 28
MlyI GAGTC 2 cut(s) 156, 182
MnlI CCTC 3 cut(s) 28, 174, 227
MroI TCCGGA 1 cut(s) 8
MspI CCGG 4 cut(s) 9, 70, 212, 239
MspR9I CCNGG 1 cut(s) 239
MwoI GCNNNNNNNGC 3 cut(s) 48, 72, 121
NciI CCSGG 1 cut(s) 239
NdeII GATC 2 cut(s) 5, 139
NlaIII CATG 1 cut(s) 273
NlaIV GGNNCC 1 cut(s) 133
NmeAIII GCCGAG 1 cut(s) 196
PkrI GCNGC 1 cut(s) 196
PleI GAGTC 2 cut(s) 155, 181
PpsI GAGTC 2 cut(s) 155, 181
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 236
PsuI RGATCY 2 cut(s) 5, 139
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 2 cut(s) 5, 139
Sau96I GGNCC 1 cut(s) 236
SchI GAGTC 2 cut(s) 156, 182
ScrFI CCNGG 1 cut(s) 239
SetI ASST 7 cut(s) 48, 77, 90, 121, 126, 157, 168
SfaNI GCATC 1 cut(s) 103
Sse9I AATT 1 cut(s) 28
SsiI CCGC 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 3 cut(s) 48, 90, 121
TaqI TCGA 2 cut(s) 145, 176
TasI AATT 1 cut(s) 28
TauI GCSGC 1 cut(s) 197
TscAI CASTG 1 cut(s) 111
TspRI CASTG 1 cut(s) 111
XapI RAATTY 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.