Rh1BG348900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0018080
Physical Location & Seq
Reverse (-)
48193746 .. 48194996
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG348900.1

Sequence Viewer

Length: 1251 bp
ATGTTGAGTGTTGAAAATCCTGTTCCAGTTTCGAGTTTTGAAGTTATCAAACGATGTTTTAACGAAGAGTTGAGAGCCGAAACGTATAAGCGCCTTGCACAAACTTCTGTTTTACAAGAAATCTTTGGGGTTGGCTCTAGTGGACAGTGGTATGTAGCCAAGAGGGCAGCTCAACATGTTGGCTCATCACTAATGCTGCTTGGAACTCCATTGATTCTGTCCCATTGGAGTGCTACATCAGATGATTCAGATGGTAAACGTAATGGAATGAGCAGGTTTCAAGACTTGGCTAGTAGTTTGGTTCCACAAAAAGTGCAATGCGGATGGAGTTGTCTTTCTGATGTGGAATCAAATTTACCAGAAGTTAATCAGCCAGCACAATGCAGTTTTGAGGTCCCCCAATTTGTGCAATCGATTGATCCATTTTTTGTAACAATTCATGATAAACTTGTGCATGTTTTTCCATCTCTGGGGACTGCTCTGGATCATGTAAGAAAGATATATGATCGTGTCAACAGAGGTGAAGCTGTAGATGCTCTAGTGGTTTCAGAAGTCTACCCTTTTCGGAGAGTGGTGGAGCTGTTGCGATGTATTGATAATGATGAAGGTCGACTCCCAATCAATAGAATGAATACCATCCTAAGTAGGATTGAGTTTTCTGAGCTTCCATTAGAGGACAAGAAACATGCTCTCTCTGCACAAGCTCTTCGAAGCTTGACTAAAAGATTCAAGACCATAGTAGCAGTTGTGGATGCTAAGGACTTGCAAGGTCTTAGAAAATACTGGTACACTCCTATTCCTCCAGAATACAAGGATCTAGCTGCACAGATTGTTACAAGATATGAAGGTGAGGCAGCTAGGCCAGTTCTACAAGGGTCCTCATTCTCGGAACTTGTTCAAGCTTCCATTATCATGAATATCAAAGCAAAACTGAGAATTCCTACGCCTTCTGATTATGTGATACGGGCTGCAGAGAACACCAGCTGGTGGGCAATGAGAACAGCATTCTATGAAATGATGAGAGATGGGAAAGTGCATCCCCTTCCTTTGAGAAGATTGGTGGTTAGTATGTCGATTCGTATGAAGTTGTTTTGGCATAAAGTTGGGGTCAAATGTGCTGCTGATTCCCTTCCTGCAGCTCCATCAGTTGCCCGTCTGGGTCGCGGTATCAAAAGTTTAAGCCATGCAGCTCAGGTTGTCAAGTATACCCATGAAAGTTTAGGATACCGTCCCACTAGCGTAGTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

416

Amino Acids

46.73

Weight (kDa)

9.25

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018080)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26521 FvH4_7g26521
rosa_chinensis RchiOBHm_Chr1g0373181
rosa_laevigata RLG00000026845
rosa_multiflora Rmu_sc0000170.1_g000014
rosa_rugosa Rorug01G0376600
rosa_samantha Rh1AG385000 Rh1BG348900 Rh1CG362400 Rh1DG379900
rosa_wichuraiana Rw1G033960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 264
AccB7I CCANNNNNTGG 1 cut(s) 987
AccI GTMKAC 3 cut(s) 555, 610, 1205
AccII CGCG 1 cut(s) 1164
AciI CCGC 2 cut(s) 321, 1164
AclWI GGATC 3 cut(s) 413, 492, 822
AcsI RAATTY 2 cut(s) 352, 936
AfaI GTAC 1 cut(s) 788
AfiI CCNNNNNNNGG 2 cut(s) 470, 987
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 6 cut(s) 14, 41, 281, 730, 899, 1247
AlwI GGATC 3 cut(s) 413, 492, 822
AoxI GGCC 1 cut(s) 860
ApeKI GCWGC 8 cut(s) 167, 196, 821, 854, 968, 1118, 1136, 1187
ApoI RAATTY 2 cut(s) 352, 936
Asp700I GAANNNNTTC 1 cut(s) 894
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 2 cut(s) 394, 876
AsuHPI GGTGA 2 cut(s) 533, 860
AsuII TTCGAA 1 cut(s) 709
AvaII GGWCC 2 cut(s) 394, 876
BbvI GCAGC 8 cut(s) 179, 183, 808, 866, 955, 1105, 1148, 1199
BccI CCATC 6 cut(s) 245, 318, 472, 644, 1019, 1150
BciVI GTATCC 1 cut(s) 1217
BfaI CTAG 6 cut(s) 138, 291, 539, 818, 858, 1236
BfmI CTRYAG 3 cut(s) 528, 969, 1134
BfoI RGCGCY 1 cut(s) 94
BfuAI ACCTGC 1 cut(s) 264
BfuI GTATCC 1 cut(s) 1217
BglI GCCNNNNNGGC 1 cut(s) 164
BisI GCNGC 8 cut(s) 168, 197, 822, 855, 969, 1119, 1137, 1188
BlsI GCNGC 8 cut(s) 169, 198, 823, 856, 970, 1120, 1138, 1189
Bme18I GGWCC 2 cut(s) 394, 876
BmgT120I GGNCC 2 cut(s) 394, 876
BmiI GGNNCC 3 cut(s) 303, 396, 877
BmsI GCATC 3 cut(s) 523, 742, 1045
BplI GAGNNNNNCTC 2 cut(s) 154, 186
BpmI CTGGAG 1 cut(s) 786
Bpu10I CCTNAGC 2 cut(s) 756, 1191
Bpu14I TTCGAA 1 cut(s) 709
Bsa29I ATCGAT 1 cut(s) 413
Bsc4I CCNNNNNNNGG 2 cut(s) 470, 987
Bse1I ACTGG 3 cut(s) 26, 788, 863
Bse3DI GCAATG 2 cut(s) 323, 999
BseCI ATCGAT 1 cut(s) 413
BseGI GGATG 4 cut(s) 329, 636, 757, 1036
BseLI CCNNNNNNNGG 2 cut(s) 470, 987
BseMI GCAATG 2 cut(s) 323, 999
BseMII CTCAG 3 cut(s) 651, 923, 1205
BseNI ACTGG 3 cut(s) 26, 788, 863
BseXI GCAGC 8 cut(s) 179, 183, 808, 866, 955, 1105, 1148, 1199
BsgI GTGCAG 2 cut(s) 681, 807
Bsh1236I CGCG 1 cut(s) 1164
BshFI GGCC 1 cut(s) 862
BshVI ATCGAT 1 cut(s) 413
BslFI GGGAC 4 cut(s) 205, 380, 487, 1215
BslI CCNNNNNNNGG 2 cut(s) 470, 987
BsmFI GGGAC 4 cut(s) 205, 380, 487, 1215
BsmI GAATGC 1 cut(s) 1004
BsnI GGCC 1 cut(s) 862
Bsp119I TTCGAA 1 cut(s) 709
Bsp143I GATC 4 cut(s) 418, 484, 505, 814
BspACI CCGC 2 cut(s) 321, 1164
BspANI GGCC 1 cut(s) 862
BspCNI CTCAG 3 cut(s) 652, 924, 1204
BspDI ATCGAT 1 cut(s) 413
BspFNI CGCG 1 cut(s) 1164
BspHI TCATGA 2 cut(s) 439, 912
BspLI GGNNCC 3 cut(s) 303, 396, 877
BspMAI CTGCAG 2 cut(s) 973, 1138
BspMI ACCTGC 1 cut(s) 264
BspPI GGATC 3 cut(s) 413, 492, 822
BspQI GCTCTTC 1 cut(s) 711
BspT104I TTCGAA 1 cut(s) 709
BsrDI GCAATG 2 cut(s) 323, 999
BsrI ACTGG 3 cut(s) 26, 788, 863
BssMI GATC 4 cut(s) 418, 484, 505, 814
BssNAI GTATAC 1 cut(s) 1206
Bst1107I GTATAC 1 cut(s) 1206
Bst4CI ACNGT 2 cut(s) 147, 1229
Bst6I CTCTTC 2 cut(s) 60, 711
BstBI TTCGAA 1 cut(s) 709
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 6 cut(s) 641, 660, 756, 773, 932, 1191
BstF5I GGATG 4 cut(s) 329, 636, 757, 1036
BstFNI CGCG 1 cut(s) 1164
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 4 cut(s) 421, 487, 508, 817
BstMBI GATC 4 cut(s) 418, 484, 505, 814
BstMWI GCNNNNNNNGC 3 cut(s) 164, 533, 695
BstNSI RCATGY 3 cut(s) 179, 458, 689
BstSFI CTRYAG 3 cut(s) 528, 969, 1134
BstUI CGCG 1 cut(s) 1164
BstV1I GCAGC 8 cut(s) 179, 183, 808, 866, 955, 1105, 1148, 1199
BstX2I RGATCY 1 cut(s) 814
BstYI RGATCY 1 cut(s) 814
BstZ17I GTATAC 1 cut(s) 1206
Bsu15I ATCGAT 1 cut(s) 413
BsuI GTATCC 1 cut(s) 1217
BsuRI GGCC 1 cut(s) 862
BsuTUI ATCGAT 1 cut(s) 413
BtgZI GCGATG 1 cut(s) 601
BtsCI GGATG 4 cut(s) 329, 636, 757, 1036
BtsIMutI CAGTG 1 cut(s) 152
BveI ACCTGC 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 375
CciI TCATGA 2 cut(s) 439, 912
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 2 cut(s) 394, 876
ClaI ATCGAT 1 cut(s) 413
Csp6I GTAC 1 cut(s) 787
CviAII CATG 8 cut(s) 176, 440, 455, 488, 686, 913, 1184, 1211
CviQI GTAC 1 cut(s) 787
DdeI CTNAG 6 cut(s) 641, 660, 756, 773, 932, 1191
DpnI GATC 4 cut(s) 420, 486, 507, 816
DpnII GATC 4 cut(s) 418, 484, 505, 814
Eam1104I CTCTTC 2 cut(s) 60, 711
EarI CTCTTC 2 cut(s) 60, 711
Eco47I GGWCC 2 cut(s) 394, 876
EcoO109I RGGNCCY 2 cut(s) 394, 876
EcoRI GAATTC 1 cut(s) 936
FaeI CATG 8 cut(s) 179, 443, 458, 491, 689, 916, 1187, 1214
FaqI GGGAC 4 cut(s) 205, 380, 487, 1215
FatI CATG 8 cut(s) 175, 439, 454, 487, 685, 912, 1183, 1210
FblI GTMKAC 3 cut(s) 555, 610, 1205
Fnu4HI GCNGC 8 cut(s) 168, 197, 822, 855, 969, 1119, 1137, 1188
FokI GGATG 4 cut(s) 336, 623, 764, 1023
Fsp4HI GCNGC 8 cut(s) 168, 197, 822, 855, 969, 1119, 1137, 1188
FspBI CTAG 6 cut(s) 138, 291, 539, 818, 858, 1236
GlaI GCGC 1 cut(s) 92
GluI GCNGC 8 cut(s) 168, 197, 822, 855, 969, 1119, 1137, 1188
GsuI CTGGAG 1 cut(s) 786
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 1 cut(s) 862
HhaI GCGC 1 cut(s) 93
Hin1II CATG 8 cut(s) 179, 443, 458, 491, 689, 916, 1187, 1214
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 2 cut(s) 514, 611
HindII GTYRAC 2 cut(s) 514, 611
HindIII AAGCTT 2 cut(s) 712, 900
HinfI GANTC 7 cut(s) 214, 245, 347, 612, 726, 1075, 1124
HphI GGTGA 2 cut(s) 533, 860
Hpy166II GTNNAC 7 cut(s) 143, 257, 514, 556, 611, 789, 1206
Hpy188I TCNGA 8 cut(s) 241, 250, 340, 550, 567, 661, 889, 952
Hpy188III TCNNGA 6 cut(s) 281, 440, 482, 730, 803, 913
Hpy8I GTNNAC 7 cut(s) 143, 257, 514, 556, 611, 789, 1206
HpyAV CCTTC 5 cut(s) 599, 839, 957, 1052, 1139
HpyCH4III ACNGT 2 cut(s) 147, 1229
HpyCH4IV ACGT 2 cut(s) 83, 259
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 533, 695
HpyF3I CTNAG 6 cut(s) 641, 660, 756, 773, 932, 1191
HpySE526I ACGT 2 cut(s) 83, 259
Hsp92II CATG 8 cut(s) 179, 443, 458, 491, 689, 916, 1187, 1214
HspAI GCGC 1 cut(s) 91
Kzo9I GATC 4 cut(s) 418, 484, 505, 814
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 2 cut(s) 577, 1144
Lsp1109I GCAGC 8 cut(s) 179, 183, 808, 866, 955, 1105, 1148, 1199
LweI GCATC 3 cut(s) 523, 742, 1045
MaeI CTAG 6 cut(s) 138, 291, 539, 818, 858, 1236
MaeII ACGT 2 cut(s) 83, 259
MaeIII GTNAC 2 cut(s) 430, 832
MalI GATC 4 cut(s) 420, 486, 507, 816
MboI GATC 4 cut(s) 418, 484, 505, 814
MboII GAAGA 3 cut(s) 77, 698, 1065
MflI RGATCY 1 cut(s) 814
MluCI AATT 4 cut(s) 352, 401, 435, 936
MlyI GAGTC 1 cut(s) 606
MnlI CCTC 7 cut(s) 156, 385, 512, 667, 810, 844, 889
MroXI GAANNNNTTC 1 cut(s) 894
MseI TTAA 3 cut(s) 60, 366, 1178
MslI CAYNNNNRTG 2 cut(s) 228, 911
MspA1I CMGCKG 1 cut(s) 984
Mva1269I GAATGC 1 cut(s) 1004
MvnI CGCG 1 cut(s) 1164
MwoI GCNNNNNNNGC 3 cut(s) 164, 533, 695
NdeII GATC 4 cut(s) 418, 484, 505, 814
NlaIII CATG 8 cut(s) 179, 443, 458, 491, 689, 916, 1187, 1214
NlaIV GGNNCC 3 cut(s) 303, 396, 877
NspI RCATGY 3 cut(s) 179, 458, 689
NspV TTCGAA 1 cut(s) 709
PagI TCATGA 2 cut(s) 439, 912
PciI ACATGT 1 cut(s) 175
PciSI GCTCTTC 1 cut(s) 711
PctI GAATGC 1 cut(s) 1004
PdmI GAANNNNTTC 1 cut(s) 894
PfeI GAWTC 6 cut(s) 214, 245, 347, 726, 1075, 1124
PflMI CCANNNNNTGG 1 cut(s) 987
PkrI GCNGC 8 cut(s) 169, 198, 823, 856, 970, 1120, 1138, 1189
PleI GAGTC 1 cut(s) 606
PpsI GAGTC 1 cut(s) 606
PpuMI RGGWCCY 2 cut(s) 394, 876
PscI ACATGT 1 cut(s) 175
Psp5II RGGWCCY 2 cut(s) 394, 876
PspN4I GGNNCC 3 cut(s) 303, 396, 877
PspPI GGNCC 2 cut(s) 394, 876
PspPPI RGGWCCY 2 cut(s) 394, 876
PstI CTGCAG 2 cut(s) 973, 1138
PsuI RGATCY 1 cut(s) 814
PvuII CAGCTG 1 cut(s) 984
RsaI GTAC 1 cut(s) 788
RsaNI GTAC 1 cut(s) 787
RseI CAYNNNNRTG 2 cut(s) 228, 911
SalI GTCGAC 1 cut(s) 609
SapI GCTCTTC 1 cut(s) 711
SaqAI TTAA 3 cut(s) 60, 366, 1178
SatI GCNGC 8 cut(s) 168, 197, 822, 855, 969, 1119, 1137, 1188
Sau3AI GATC 4 cut(s) 418, 484, 505, 814
Sau96I GGNCC 2 cut(s) 394, 876
SchI GAGTC 1 cut(s) 606
SfaNI GCATC 3 cut(s) 523, 742, 1045
SfcI CTRYAG 3 cut(s) 528, 969, 1134
SfuI TTCGAA 1 cut(s) 709
SinI GGWCC 2 cut(s) 394, 876
SmiMI CAYNNNNRTG 2 cut(s) 228, 911
Sse9I AATT 4 cut(s) 352, 401, 435, 936
SsiI CCGC 2 cut(s) 321, 1164
SspMI CTAG 6 cut(s) 138, 291, 539, 818, 858, 1236
TaaI ACNGT 2 cut(s) 147, 1229
TaiI ACGT 2 cut(s) 86, 262
TaqI TCGA 5 cut(s) 32, 413, 610, 709, 1073
TasI AATT 4 cut(s) 352, 401, 435, 936
TfiI GAWTC 6 cut(s) 214, 245, 347, 726, 1075, 1124
Tru1I TTAA 3 cut(s) 60, 366, 1178
Tru9I TTAA 3 cut(s) 60, 366, 1178
TscAI CASTG 1 cut(s) 152
TseI GCWGC 8 cut(s) 167, 196, 821, 854, 968, 1118, 1136, 1187
TspDTI ATGAA 8 cut(s) 428, 618, 644, 858, 929, 1026, 1097, 1227
TspRI CASTG 1 cut(s) 152
Van91I CCANNNNNTGG 1 cut(s) 987
VpaK11BI GGWCC 2 cut(s) 394, 876
XapI RAATTY 2 cut(s) 352, 936
XceI RCATGY 3 cut(s) 179, 458, 689
XmiI GTMKAC 3 cut(s) 555, 610, 1205
XmnI GAANNNNTTC 1 cut(s) 894
XspI CTAG 6 cut(s) 138, 291, 539, 818, 858, 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.