RchiOBHm_Chr1g0374121

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
62050156 .. 62051795
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1329 bp
ATGGATAAGCCTTACACCTGCAAGATCTGCAACAAGCGCTTCAAAGGTGGCAAGGCCATGGGCGGACACATGAGATCTCATCTCGCCAAGCTTCCGCTCCCTCCCAAACACCCTCCACCTCCCCCGCCGCCGCCAGCGACTCCTTCTCCGCCGCAGCGGCTCGCTCACTCGCCGGAGTTTTCATCCTCCTCGACTCATCATAACCTTAGCAACAACAACATCTTCCGAATCCGGAACTTAAACAGCAGCGTGAGCCTCATGCAGATGATGATGATGCAATCTCCTCCGCCGTCTACGGCCCCGGCCCCGGCTCCGGCGACTATTCTGAAGTACCGGGAAGTTGTTGTTGCTGCTACTGCTGTGGCTCCGCCGTCGTCTATGGACTCGGCGGTGGAGAGCGACAGCACCGAGTCGCAGCAGAAGAACCTGACCCGGAGAAGATCCAAACGTCGTCGTAAGGTGATTGTGAGTGCGGCGCCGCCGCCCCTGGAGGCCGCCGAGGAGCAGCAGGTAAGTTCCGTTTCCGATACTTTCTCACCGGAAGATTGTGCTCTCTCTCTTATGATGCTCTCAAGGGACACATGGAAAATGAAAGTCACAAATGAACTAGCTTATGGTGATGAAGAATCTCTTGAGGAAGAACAAGAGGAGGAAGTGGTGGAAGAAGAAGAGGAGGAAGACGACGACGTCGTTTTCATCCCCAGGACTACTCCCAAGAGTACTTCTTCTAATAATCAAGGGGGGAAGTACAAGTGTGATACTTGCAAGAAAGAGTTCCAATCCTACCAAGCACTCGGCGGCCACCGAGCCAGCCACAAGAGAGTCCGGCACCAAGTCTTAGAGGAAGACGACGATGACGTGGAAGTCGGCGATGATGATTCCGAGGAGGATGAGGTGTTGGCAGTAGGAGGAAGAGGAGGTGGCAATGGCCGTGGCAGTGGTAATGGTGGTGGTGGTGGTGTCCAGGGGTATAATGGGAAGTCTGCTGTTGTGGAGCATCCTCCTCCCAGGGTATTTGAATGCCCATTTTGTTTCAAGCTGTTTGATTCTGGTCAAGCACTTGGTGGGCATAAGAAGGTGCACTATTATAATAATAATACTAATAACAATACTAGTTATAATAATACCAACAACAACAGCAGCAGCAGCAATGTCCCAGCTGCTAGTAGTACCACCAACACCAATACCAACACCAACACCAACAATGCTAGGGCCTCTTCCTCCTCAGCAAACGTATCTTCTGCAAACTATGGAGGCAACAATCTGGTGATTGATCTCAATCTCCCAGCACCAGAAGAAGAGTTCGACTTTTCGACAATTTCAGATTAG

Protein Analysis

442

Amino Acids

47.9

Weight (kDa)

5.41

Isoelectric Point (pI)

66.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 5 - 29 4e-08 C2H2-type zinc finger
zf-C2H2_6 PF13912 250 - 274 2.3e-12 C2H2-type zinc finger
zf-C2H2_6 PF13912 338 - 361 6.7e-07 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018480)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g27290
rosa_chinensis RchiOBHm_Chr1g0374121
rosa_laevigata RLG00000026761
rosa_multiflora Rmu_sc0020614.1_g000003 Rmu_sc0026266.1_g000001
rosa_rugosa Rorug01G0380800
rosa_samantha Rh1AG391700 Rh1CG368700 Rh1DG386400
rosa_wichuraiana Rw1G034390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1089, 1119
AarI CACCTGC 1 cut(s) 26
AasI GACNNNNNNGTC 2 cut(s) 686, 863
AatII GACGTC 1 cut(s) 690
Acc36I ACCTGC 2 cut(s) 26, 499
AccB1I GGYRCC 2 cut(s) 475, 828
AccBSI CCGCTC 1 cut(s) 97
AccI GTMKAC 1 cut(s) 293
AccIII TCCGGA 1 cut(s) 231
AclWI GGATC 1 cut(s) 435
AcoI YGGCCR 2 cut(s) 799, 928
AcuI CTGAAG 1 cut(s) 347
AcyI GRCGYC 2 cut(s) 476, 687
AdeI CACNNNGTG 1 cut(s) 1064
AfaI GTAC 4 cut(s) 332, 721, 749, 1171
AfeI AGCGCT 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 307, 313
AgsI TTSAA 3 cut(s) 43, 1019, 1036
AhlI ACTAGT 1 cut(s) 1112
AjiI CACGTC 1 cut(s) 859
AjnI CCWGG 4 cut(s) 486, 701, 963, 1007
AluBI AGCT 4 cut(s) 91, 611, 1039, 1160
AluI AGCT 4 cut(s) 91, 611, 1039, 1160
Alw21I GWGCWC 2 cut(s) 553, 1083
Alw44I GTGCAC 1 cut(s) 1079
AlwI GGATC 1 cut(s) 435
Aor13HI TCCGGA 1 cut(s) 231
Aor51HI AGCGCT 1 cut(s) 38
AoxI GGCC 7 cut(s) 54, 297, 303, 492, 799, 928, 1212
ApaLI GTGCAC 1 cut(s) 1079
ApeKI GCWGC 9 cut(s) 154, 246, 350, 415, 505, 1140, 1143, 1146, 1160
Asp700I GAANNNNTTC 1 cut(s) 773
AspLEI GCGC 2 cut(s) 39, 478
AspS9I GGNCC 3 cut(s) 298, 304, 1212
AsuC2I CCSGG 4 cut(s) 302, 308, 335, 433
AsuHPI GGTGA 4 cut(s) 472, 528, 629, 1279
BaeGI GKGCMC 1 cut(s) 1083
BanI GGYRCC 2 cut(s) 475, 828
BbsI GAAGAC 2 cut(s) 684, 852
Bbv12I GWGCWC 2 cut(s) 553, 1083
BbvCI CCTCAGC 1 cut(s) 1225
BbvI GCAGC 9 cut(s) 166, 258, 337, 427, 517, 1147, 1152, 1155, 1158
BceAI ACGGC 4 cut(s) 274, 312, 355, 915
BciT130I CCWGG 4 cut(s) 488, 703, 965, 1009
BcnI CCSGG 4 cut(s) 302, 308, 335, 433
BcuI ACTAGT 1 cut(s) 1112
BfaI CTAG 4 cut(s) 608, 1113, 1164, 1209
BfoI RGCGCY 2 cut(s) 40, 479
BfuAI ACCTGC 2 cut(s) 26, 499
BglI GCCNNNNNGGC 1 cut(s) 157
BglII AGATCT 2 cut(s) 24, 74
BmcAI AGTACT 1 cut(s) 721
Bme1390I CCNGG 8 cut(s) 302, 308, 335, 433, 488, 703, 965, 1009
BmgBI CACGTC 1 cut(s) 859
BmgT120I GGNCC 3 cut(s) 298, 304, 1212
BmiI GGNNCC 6 cut(s) 300, 306, 312, 366, 477, 830
BmrFI CCNGG 8 cut(s) 302, 308, 335, 433, 488, 703, 965, 1009
BmsI GCATC 3 cut(s) 264, 555, 1006
BpiI GAAGAC 2 cut(s) 684, 852
BpmI CTGGAG 1 cut(s) 509
Bpu10I CCTNAGC 2 cut(s) 206, 1225
BpuEI CTTGAG 2 cut(s) 556, 653
BpuMI CCSGG 4 cut(s) 302, 308, 335, 433
BsaBI GATNNNNATC 1 cut(s) 1278
BsaHI GRCGYC 2 cut(s) 476, 687
BsaWI WCCGGW 2 cut(s) 231, 538
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 313
Bse3DI GCAATG 2 cut(s) 931, 1156
Bse8I GATNNNNATC 1 cut(s) 1278
BseAI TCCGGA 1 cut(s) 231
BseBI CCWGG 4 cut(s) 488, 703, 965, 1009
BseGI GGATG 4 cut(s) 182, 696, 895, 997
BseJI GATNNNNATC 1 cut(s) 1278
BseLI CCNNNNNNNGG 2 cut(s) 307, 313
BseMI GCAATG 2 cut(s) 931, 1156
BseMII CTCAG 1 cut(s) 1239
BseRI GAGGAG 9 cut(s) 178, 273, 515, 662, 686, 899, 930, 993, 1213
BseSI GKGCMC 1 cut(s) 1083
BseXI GCAGC 9 cut(s) 166, 258, 337, 427, 517, 1147, 1152, 1155, 1158
BseYI CCCAGC 2 cut(s) 1156, 1285
BshFI GGCC 7 cut(s) 56, 299, 305, 494, 801, 930, 1214
BshNI GGYRCC 2 cut(s) 475, 828
BsiHKAI GWGCWC 2 cut(s) 553, 1083
BsiSI CCGG 9 cut(s) 173, 232, 302, 308, 314, 334, 433, 539, 826
BslFI GGGAC 2 cut(s) 590, 1139
BslI CCNNNNNNNGG 2 cut(s) 307, 313
BsmFI GGGAC 2 cut(s) 590, 1139
BsmI GAATGC 1 cut(s) 1025
BsnI GGCC 7 cut(s) 56, 299, 305, 494, 801, 930, 1214
Bsp1286I GDGCHC 2 cut(s) 553, 1083
Bsp13I TCCGGA 1 cut(s) 231
Bsp143I GATC 4 cut(s) 24, 74, 440, 1273
Bsp19I CCATGG 1 cut(s) 57
BspANI GGCC 7 cut(s) 56, 299, 305, 494, 801, 930, 1214
BspCNI CTCAG 1 cut(s) 1238
BspEI TCCGGA 1 cut(s) 231
BspLI GGNNCC 6 cut(s) 300, 306, 312, 366, 477, 830
BspMI ACCTGC 2 cut(s) 26, 499
BspPI GGATC 1 cut(s) 435
BspT107I GGYRCC 2 cut(s) 475, 828
BsrBI CCGCTC 1 cut(s) 97
BsrDI GCAATG 2 cut(s) 931, 1156
BssMI GATC 4 cut(s) 24, 74, 440, 1273
BssNI GRCGYC 2 cut(s) 476, 687
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 4 cut(s) 488, 703, 965, 1009
Bst6I CTCTTC 4 cut(s) 663, 907, 1222, 1293
BstACI GRCGYC 2 cut(s) 476, 687
BstAPI GCANNNNNTGC 1 cut(s) 27
BstC8I GCNNGC 3 cut(s) 135, 162, 811
BstDEI CTNAG 3 cut(s) 206, 838, 1225
BstDSI CCRYGG 2 cut(s) 57, 931
BstF5I GGATG 4 cut(s) 182, 696, 895, 997
BstH2I RGCGCY 2 cut(s) 40, 479
BstHHI GCGC 2 cut(s) 39, 478
BstKTI GATC 4 cut(s) 27, 77, 443, 1276
BstMBI GATC 4 cut(s) 24, 74, 440, 1273
BstMWI GCNNNNNNNGC 6 cut(s) 27, 36, 157, 252, 356, 1146
BstNI CCWGG 4 cut(s) 488, 703, 965, 1009
BstSCI CCNGG 8 cut(s) 300, 306, 333, 431, 486, 701, 963, 1007
BstSLI GKGCMC 1 cut(s) 1083
BstV1I GCAGC 9 cut(s) 166, 258, 337, 427, 517, 1147, 1152, 1155, 1158
BstV2I GAAGAC 2 cut(s) 684, 852
BstX2I RGATCY 3 cut(s) 24, 74, 440
BstYI RGATCY 3 cut(s) 24, 74, 440
BsuRI GGCC 7 cut(s) 56, 299, 305, 494, 801, 930, 1214
BtgI CCRYGG 2 cut(s) 57, 931
BtgZI GCGATG 1 cut(s) 885
BtrI CACGTC 1 cut(s) 859
BtsCI GGATG 4 cut(s) 182, 696, 895, 997
BtsI GCAGTG 1 cut(s) 943
BtsIMutI CAGTG 1 cut(s) 943
BveI ACCTGC 2 cut(s) 26, 499
Cac8I GCNNGC 3 cut(s) 135, 162, 811
CfoI GCGC 2 cut(s) 39, 478
Cfr13I GGNCC 3 cut(s) 298, 304, 1212
Csp6I GTAC 4 cut(s) 331, 720, 748, 1170
CspCI CAANNNNNGTGG 2 cut(s) 913, 948
CviAII CATG 4 cut(s) 58, 70, 259, 582
CviQI GTAC 4 cut(s) 331, 720, 748, 1170
DdeI CTNAG 3 cut(s) 206, 838, 1225
DinI GGCGCC 1 cut(s) 477
DpnI GATC 4 cut(s) 26, 76, 442, 1275
DpnII GATC 4 cut(s) 24, 74, 440, 1273
DraIII CACNNNGTG 1 cut(s) 1064
DrdI GACNNNNNNGTC 2 cut(s) 686, 863
DseDI GACNNNNNNGTC 2 cut(s) 686, 863
EaeI YGGCCR 2 cut(s) 799, 928
Eam1104I CTCTTC 4 cut(s) 663, 907, 1222, 1293
EarI CTCTTC 4 cut(s) 663, 907, 1222, 1293
EciI GGCGGA 4 cut(s) 78, 138, 276, 357
Eco130I CCWWGG 1 cut(s) 57
Eco47III AGCGCT 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 1212
EcoRII CCWGG 4 cut(s) 486, 701, 963, 1007
EcoT14I CCWWGG 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 477
EheI GGCGCC 1 cut(s) 477
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 4 cut(s) 61, 73, 262, 585
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FaqI GGGAC 2 cut(s) 590, 1139
FatI CATG 4 cut(s) 57, 69, 258, 581
FauI CCCGC 1 cut(s) 132
FblI GTMKAC 1 cut(s) 293
FokI GGATG 4 cut(s) 169, 683, 902, 984
FspBI CTAG 4 cut(s) 608, 1113, 1164, 1209
GlaI GCGC 2 cut(s) 38, 477
GsaI CCCAGC 2 cut(s) 1160, 1289
GsuI CTGGAG 1 cut(s) 509
HaeII RGCGCY 2 cut(s) 40, 479
HaeIII GGCC 7 cut(s) 56, 299, 305, 494, 801, 930, 1214
HapII CCGG 9 cut(s) 173, 232, 302, 308, 314, 334, 433, 539, 826
HhaI GCGC 2 cut(s) 39, 478
Hin1I GRCGYC 2 cut(s) 476, 687
Hin1II CATG 4 cut(s) 61, 73, 262, 585
Hin6I GCGC 2 cut(s) 37, 476
HinP1I GCGC 2 cut(s) 37, 476
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 9 cut(s) 139, 193, 228, 383, 410, 626, 822, 878, 1046
HpaII CCGG 9 cut(s) 173, 232, 302, 308, 314, 334, 433, 539, 826
HphI GGTGA 4 cut(s) 472, 528, 629, 1279
Hpy166II GTNNAC 2 cut(s) 294, 1081
Hpy188I TCNGA 5 cut(s) 227, 327, 526, 883, 1324
Hpy188III TCNNGA 2 cut(s) 232, 632
Hpy8I GTNNAC 2 cut(s) 294, 1081
Hpy99I CGWCG 7 cut(s) 376, 453, 456, 686, 689, 692, 854
HpyAV CCTTC 2 cut(s) 153, 1069
HpyCH4IV ACGT 4 cut(s) 448, 687, 858, 1233
HpyCH4V TGCA 7 cut(s) 21, 30, 262, 277, 765, 1081, 1244
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 36, 157, 252, 356, 1146
HpyF3I CTNAG 3 cut(s) 206, 838, 1225
HpySE526I ACGT 4 cut(s) 448, 687, 858, 1233
Hsp92I GRCGYC 2 cut(s) 476, 687
Hsp92II CATG 4 cut(s) 61, 73, 262, 585
HspAI GCGC 2 cut(s) 37, 476
KasI GGCGCC 1 cut(s) 475
Kpn2I TCCGGA 1 cut(s) 231
Kzo9I GATC 4 cut(s) 24, 74, 440, 1273
LmnI GCTCC 5 cut(s) 102, 316, 370, 502, 994
Lsp1109I GCAGC 9 cut(s) 166, 258, 337, 427, 517, 1147, 1152, 1155, 1158
LweI GCATC 3 cut(s) 264, 555, 1006
MaeI CTAG 4 cut(s) 608, 1113, 1164, 1209
MaeII ACGT 4 cut(s) 448, 687, 858, 1233
MaeIII GTNAC 1 cut(s) 595
MalI GATC 4 cut(s) 26, 76, 442, 1275
MbiI CCGCTC 1 cut(s) 97
MboI GATC 4 cut(s) 24, 74, 440, 1273
MflI RGATCY 3 cut(s) 24, 74, 440
MhlI GDGCHC 2 cut(s) 553, 1083
MluCI AATT 1 cut(s) 1317
Mly113I GGCGCC 1 cut(s) 476
MlyI GAGTC 5 cut(s) 133, 187, 377, 419, 831
MroI TCCGGA 1 cut(s) 231
MroXI GAANNNNTTC 1 cut(s) 773
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 263
MspA1I CMGCKG 2 cut(s) 157, 1160
MspI CCGG 9 cut(s) 173, 232, 302, 308, 314, 334, 433, 539, 826
MspR9I CCNGG 8 cut(s) 302, 308, 335, 433, 488, 703, 965, 1009
Mva1269I GAATGC 1 cut(s) 1025
MvaI CCWGG 4 cut(s) 488, 703, 965, 1009
MwoI GCNNNNNNNGC 6 cut(s) 27, 36, 157, 252, 356, 1146
NarI GGCGCC 1 cut(s) 476
NciI CCSGG 4 cut(s) 302, 308, 335, 433
NcoI CCATGG 1 cut(s) 57
NdeII GATC 4 cut(s) 24, 74, 440, 1273
NlaIII CATG 4 cut(s) 61, 73, 262, 585
NlaIV GGNNCC 6 cut(s) 300, 306, 312, 366, 477, 830
NmeAIII GCCGAG 3 cut(s) 365, 523, 774
NmuCI GTSAC 1 cut(s) 595
PaqCI CACCTGC 1 cut(s) 26
PasI CCCWGGG 1 cut(s) 1008
PcsI WCGNNNNNNNCGW 2 cut(s) 687, 855
PctI GAATGC 1 cut(s) 1025
PdmI GAANNNNTTC 1 cut(s) 773
PfeI GAWTC 4 cut(s) 228, 626, 878, 1046
PflFI GACNNNGTC 1 cut(s) 686
PleI GAGTC 5 cut(s) 133, 187, 377, 418, 830
PluTI GGCGCC 1 cut(s) 479
PpsI GAGTC 5 cut(s) 133, 187, 377, 418, 830
PsiI TTATAA 2 cut(s) 1089, 1119
Psp6I CCWGG 4 cut(s) 486, 701, 963, 1007
PspFI CCCAGC 2 cut(s) 1156, 1285
PspGI CCWGG 4 cut(s) 486, 701, 963, 1007
PspN4I GGNNCC 6 cut(s) 300, 306, 312, 366, 477, 830
PspPI GGNCC 3 cut(s) 298, 304, 1212
PsuI RGATCY 3 cut(s) 24, 74, 440
PsyI GACNNNGTC 1 cut(s) 686
PvuII CAGCTG 1 cut(s) 1160
RsaI GTAC 4 cut(s) 332, 721, 749, 1171
RsaNI GTAC 4 cut(s) 331, 720, 748, 1170
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 1 cut(s) 239
Sau3AI GATC 4 cut(s) 24, 74, 440, 1273
Sau96I GGNCC 3 cut(s) 298, 304, 1212
ScaI AGTACT 1 cut(s) 721
SchI GAGTC 5 cut(s) 133, 187, 377, 419, 831
ScrFI CCNGG 8 cut(s) 302, 308, 335, 433, 488, 703, 965, 1009
SduI GDGCHC 2 cut(s) 553, 1083
SfaNI GCATC 3 cut(s) 264, 555, 1006
SfoI GGCGCC 1 cut(s) 477
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 2 cut(s) 571, 632
SmoI CTYRAG 2 cut(s) 571, 632
SpeI ACTAGT 1 cut(s) 1112
Sse9I AATT 1 cut(s) 1317
SspDI GGCGCC 1 cut(s) 475
SspMI CTAG 4 cut(s) 608, 1113, 1164, 1209
StyD4I CCNGG 8 cut(s) 300, 306, 333, 431, 486, 701, 963, 1007
StyI CCWWGG 1 cut(s) 57
TaiI ACGT 4 cut(s) 451, 690, 861, 1236
TaqI TCGA 3 cut(s) 191, 1305, 1313
TasI AATT 1 cut(s) 1317
TatI WGTACW 2 cut(s) 719, 747
TauI GCSGC 9 cut(s) 130, 133, 154, 160, 476, 481, 484, 497, 801
TfiI GAWTC 4 cut(s) 228, 626, 878, 1046
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 1 cut(s) 943
TseFI GTSAC 1 cut(s) 595
TseI GCWGC 9 cut(s) 154, 246, 350, 415, 505, 1140, 1143, 1146, 1160
Tsp45I GTSAC 1 cut(s) 595
TspDTI ATGAA 5 cut(s) 171, 605, 618, 636, 685
TspGWI ACGGA 1 cut(s) 508
TspRI CASTG 1 cut(s) 943
Tth111I GACNNNGTC 1 cut(s) 686
VneI GTGCAC 1 cut(s) 1079
XcmI CCANNNNNNNNNTGG 1 cut(s) 971
XmiI GTMKAC 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 773
XspI CTAG 4 cut(s) 608, 1113, 1164, 1209
ZraI GACGTC 1 cut(s) 688
ZrmI AGTACT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.