RchiOBHm_Chr1g0376521

GMC oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010788
Physical Location & Seq
Reverse (-)
63755080 .. 63757225
2146 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1284 bp
ATGTTGAGAAGAATGGATTTCAGATGGTGGAGAAGATCATTCGCTGGAGCTTTTGTTTCTTGGGTTTTCTTCTTTCTTCGCTTTTCTTGCTCAGACAAAGCTCCAGACTTCACATTTGTGAAAGAAGCAACGTCGGCTCCGCCAGTGATTTCCTACGACTACATAATTATCGGCGGCGGTACTGCTGGGTGTCCTTTAGCTGCTACTCTCTCTCACGGCGGCGCAACCGTCTTACTCCTGGAACGTGGTGGCTCTCCCTACACCAATCCTAACATCACCAACATTGACAACTTCGCTTCTGTTCTTCTGGACAGGTCTCCCACTTCTCCGGCACAGCCCTTCACCTCCGAGGATGGTGTCTACAATGCAAGGGCACGCATCCTCGGGGGTGGCTCGGCCGTCAACGCCGGGTTTTACACTCGTGCCAGCACGCACTACATCAAGGAAATGGGCTGGAACCAAAAAATGGTCGAACAGGCTTATGAATGGGTTGAGAAAGTTGTGGCATTTCAACCTCCCTTGATGGAGTGGCAGACTGCTCTCAGAGATGGCTTGCTTGAAGTCGGAGTGTTGCCGAATAACGGCTTTACCTACAACCATTTGTACGGTACTAAAGTCGGAGGTACCATTTTCGACAAAGAAGGTCATAGACACACCGCCGCGGATTTGCTTCAGTATGCAAAGCCCAGCAGTATCACTGTCTATTTGCATGCCATTGTGCACAAGATCTTGTTTAGACACATTCCCGGAAGGGCAAGGCCGCAAGCTTATGGTGTGATTTATAAAGATGCAAATGGAGTGAGGCACCAAGCTTACCTAAAGAATAACTCCAAGAACGAGATTATATTAACAGCTGGAGCTATTGGGAGCCCTCAGCTTCTGATGCTGAGTGGTATTGGGCCGGGTTACCATCTTCCGACCCACGGTATTCAGGTGGTGGTGGATCAGCCCTTGGTGGGGCAGGGAATGGCTGATAACCCAATGAACGTCCTCCTCATTCCGTCACCTCTGCCGGTTGAGGTGTCTCTTGTTCAAGTTGTGGGCATAACCAAGTTTGATACCTACATTGAAGGAGCTAGCGGACTCAGCTTGGCTTATCCTTTGGCTCGAAGGCTTGCTAAAAGCTTTAGGCTCATCTTGAATCAGAGTGATTATGAGCCTTTCAAAGTTCCACCAGAAGCCATGGCGATAGCTGTAGACACTGTAAACGCAGTTGTGAATCGGACCCTCAGAGCTGGAGTCATCCTCGAAAAATCACAGGTCCACTCTCCACAGGTCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GMC_oxred_C GMC_oxred_N

Protein Analysis

427

Amino Acids

46.82

Weight (kDa)

9.11

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GMC_oxred_N PF00732 52 - 327 4.4e-19 GMC oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010788)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56060 AT5G51930 AT5G51930 AT5G51950 AT5G51950 AT5G51950
fragaria_vesca FvH4_7g28850
malus_domestica MD01G1194300.v1.1
prunus_persica Prupe.2G288400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0376521
rosa_laevigata RLG00000026604
rosa_multiflora Rmu_sc0001308.1_g000024 Rmu_sc0016049.1_g000002
rosa_roxburghii Rroxscaffold_4G00282040
rosa_rugosa Rorug01G0396200
rosa_samantha Rh1AG408000 Rh1BG372000 Rh1CG385800 Rh1DG403000
rosa_wichuraiana Rw1G036150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 783
Acc65I GGTACC 1 cut(s) 623
AccB1I GGYRCC 2 cut(s) 623, 804
AccB7I CCANNNNNTGG 1 cut(s) 466
AccI GTMKAC 2 cut(s) 360, 1197
AccII CGCG 1 cut(s) 662
AciI CCGC 9 cut(s) 140, 174, 177, 219, 657, 660, 662, 761, 1080
AclWI GGATC 1 cut(s) 951
AcoI YGGCCR 1 cut(s) 396
AcuI CTGAAG 1 cut(s) 656
AfaI GTAC 4 cut(s) 181, 605, 610, 625
AfiI CCNNNNNNNGG 5 cut(s) 466, 581, 923, 956, 957
AgsI TTSAA 6 cut(s) 512, 560, 1034, 1070, 1141, 1165
AjnI CCWGG 1 cut(s) 237
AleI CACNNNNGTG 1 cut(s) 116
Alw21I GWGCWC 1 cut(s) 723
Alw26I GTCTC 2 cut(s) 321, 1029
Alw44I GTGCAC 1 cut(s) 719
AlwI GGATC 1 cut(s) 951
AlwNI CAGNNNCTG 1 cut(s) 880
Ama87I CYCGRG 1 cut(s) 383
AoxI GGCC 3 cut(s) 396, 758, 899
ApaLI GTGCAC 1 cut(s) 719
ApeKI GCWGC 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp718I GGTACC 1 cut(s) 623
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 3 cut(s) 899, 1224, 1261
AsuC2I CCSGG 3 cut(s) 409, 747, 903
AsuHPI GGTGA 3 cut(s) 268, 334, 996
AsuNHI GCTAGC 1 cut(s) 1076
AvaI CYCGRG 1 cut(s) 383
AvaII GGWCC 2 cut(s) 1224, 1261
BaeGI GKGCMC 2 cut(s) 376, 723
BaeI ACNNNNGTAYC 2 cut(s) 600, 633
BanI GGYRCC 2 cut(s) 623, 804
BanII GRGCYC 1 cut(s) 872
BauI CACGAG 1 cut(s) 420
Bbv12I GWGCWC 1 cut(s) 723
BbvCI CCTCAGC 1 cut(s) 873
BbvI GCAGC 1 cut(s) 187
BccI CCATC 5 cut(s) 18, 347, 517, 542, 918
BceAI ACGGC 3 cut(s) 232, 383, 598
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 3 cut(s) 409, 747, 903
BcoDI GTCTC 2 cut(s) 321, 1029
BfaI CTAG 2 cut(s) 1077, 1282
BfmI CTRYAG 1 cut(s) 1194
BglII AGATCT 1 cut(s) 726
BisI GCNGC 5 cut(s) 175, 201, 220, 660, 761
BlsI GCNGC 5 cut(s) 176, 202, 221, 661, 762
Bme1390I CCNGG 4 cut(s) 239, 409, 747, 903
Bme18I GGWCC 2 cut(s) 1224, 1261
BmeT110I CYCGRG 1 cut(s) 383
BmgT120I GGNCC 3 cut(s) 899, 1224, 1261
BmiI GGNNCC 6 cut(s) 138, 458, 625, 806, 869, 1226
BmrFI CCNGG 4 cut(s) 239, 409, 747, 903
BmsI GCATC 3 cut(s) 387, 778, 873
BmtI GCTAGC 1 cut(s) 1080
BplI GAGNNNNNCTC 2 cut(s) 1230, 1262
BpmI CTGGAG 4 cut(s) 66, 87, 876, 1257
Bpu10I CCTNAGC 1 cut(s) 873
BpuMI CCSGG 3 cut(s) 409, 747, 903
BsaI GGTCTC 1 cut(s) 321
BsaJI CCNNGG 6 cut(s) 348, 382, 660, 922, 951, 1182
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 121, 151
Bsc4I CCNNNNNNNGG 5 cut(s) 466, 581, 923, 956, 957
Bse118I RCCGGY 1 cut(s) 1012
Bse1I ACTGG 1 cut(s) 143
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 6 cut(s) 348, 382, 660, 922, 951, 1182
BseGI GGATG 3 cut(s) 358, 378, 1242
BseLI CCNNNNNNNGG 5 cut(s) 466, 581, 923, 956, 957
BseMII CTCAG 6 cut(s) 105, 556, 878, 887, 1099, 1243
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 983
BseSI GKGCMC 2 cut(s) 376, 723
BseX3I CGGCCG 1 cut(s) 396
BseXI GCAGC 1 cut(s) 187
BseYI CCCAGC 2 cut(s) 185, 686
Bsh1236I CGCG 1 cut(s) 662
Bsh1285I CGRYCG 1 cut(s) 399
BshFI GGCC 3 cut(s) 398, 760, 901
BshNI GGYRCC 2 cut(s) 623, 804
BsiEI CGRYCG 1 cut(s) 399
BsiHKAI GWGCWC 1 cut(s) 723
BsiHKCI CYCGRG 1 cut(s) 383
BsiSI CCGG 5 cut(s) 329, 408, 747, 902, 1013
BslI CCNNNNNNNGG 5 cut(s) 466, 581, 923, 956, 957
BsmAI GTCTC 2 cut(s) 321, 1029
BsnI GGCC 3 cut(s) 398, 760, 901
Bso31I GGTCTC 1 cut(s) 321
BsoBI CYCGRG 1 cut(s) 383
Bsp1286I GDGCHC 3 cut(s) 376, 723, 872
Bsp143I GATC 3 cut(s) 35, 726, 943
Bsp19I CCATGG 1 cut(s) 1182
BspACI CCGC 9 cut(s) 140, 174, 177, 219, 657, 660, 662, 761, 1080
BspANI GGCC 3 cut(s) 398, 760, 901
BspCNI CTCAG 6 cut(s) 104, 555, 879, 886, 1098, 1242
BspFNI CGCG 1 cut(s) 662
BspLI GGNNCC 6 cut(s) 138, 458, 625, 806, 869, 1226
BspOI GCTAGC 1 cut(s) 1080
BspPI GGATC 1 cut(s) 951
BspT107I GGYRCC 2 cut(s) 623, 804
BspTNI GGTCTC 1 cut(s) 321
BsrFI RCCGGY 1 cut(s) 1012
BsrI ACTGG 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 1012
BssECI CCNNGG 6 cut(s) 348, 382, 660, 922, 951, 1182
BssMI GATC 3 cut(s) 35, 726, 943
BssSI CACGAG 1 cut(s) 420
BssT1I CCWWGG 2 cut(s) 951, 1182
Bst2BI CACGAG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 5 cut(s) 229, 608, 700, 926, 1204
BstC8I GCNNGC 8 cut(s) 376, 427, 431, 554, 711, 765, 1078, 1116
BstDEI CTNAG 6 cut(s) 91, 542, 873, 887, 1085, 1229
BstDSI CCRYGG 3 cut(s) 660, 922, 1182
BstEII GGTNACC 1 cut(s) 905
BstF5I GGATG 3 cut(s) 358, 378, 1242
BstFNI CGCG 1 cut(s) 662
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 3 cut(s) 38, 729, 946
BstMAI GTCTC 2 cut(s) 321, 1029
BstMBI GATC 3 cut(s) 35, 726, 943
BstMCI CGRYCG 1 cut(s) 399
BstMWI GCNNNNNNNGC 5 cut(s) 87, 134, 404, 883, 1086
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 713
BstPI GGTNACC 1 cut(s) 905
BstSCI CCNGG 4 cut(s) 237, 407, 745, 901
BstSFI CTRYAG 1 cut(s) 1194
BstSLI GKGCMC 2 cut(s) 376, 723
BstUI CGCG 1 cut(s) 662
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 726
BstYI RGATCY 1 cut(s) 726
BstZI CGGCCG 1 cut(s) 396
BsuRI GGCC 3 cut(s) 398, 760, 901
BtgI CCRYGG 3 cut(s) 660, 922, 1182
BtsCI GGATG 3 cut(s) 358, 378, 1242
BtsIMutI CAGTG 3 cut(s) 150, 696, 1200
Cac8I GCNNGC 8 cut(s) 376, 427, 431, 554, 711, 765, 1078, 1116
CaiI CAGNNNCTG 1 cut(s) 880
CfoI GCGC 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 1012
Cfr13I GGNCC 3 cut(s) 899, 1224, 1261
Cfr42I CCGCGG 1 cut(s) 663
Csp6I GTAC 4 cut(s) 180, 604, 609, 624
CviAII CATG 2 cut(s) 710, 1183
CviQI GTAC 4 cut(s) 180, 604, 609, 624
DdeI CTNAG 6 cut(s) 91, 542, 873, 887, 1085, 1229
DpnI GATC 3 cut(s) 37, 728, 945
DpnII GATC 3 cut(s) 35, 726, 943
EaeI YGGCCR 1 cut(s) 396
EagI CGGCCG 1 cut(s) 396
EciI GGCGGA 1 cut(s) 129
EclXI CGGCCG 1 cut(s) 396
Eco130I CCWWGG 2 cut(s) 951, 1182
Eco24I GRGCYC 1 cut(s) 872
Eco31I GGTCTC 1 cut(s) 321
Eco47I GGWCC 2 cut(s) 1224, 1261
Eco52I CGGCCG 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 656
Eco88I CYCGRG 1 cut(s) 383
Eco91I GGTNACC 1 cut(s) 905
EcoO65I GGTNACC 1 cut(s) 905
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 2 cut(s) 951, 1182
EcoT38I GRGCYC 1 cut(s) 872
ErhI CCWWGG 2 cut(s) 951, 1182
FaeI CATG 2 cut(s) 713, 1186
FatI CATG 2 cut(s) 709, 1182
FblI GTMKAC 2 cut(s) 360, 1197
Fnu4HI GCNGC 5 cut(s) 175, 201, 220, 660, 761
FokI GGATG 3 cut(s) 365, 365, 1229
FriOI GRGCYC 1 cut(s) 872
Fsp4HI GCNGC 5 cut(s) 175, 201, 220, 660, 761
FspBI CTAG 2 cut(s) 1077, 1282
GlaI GCGC 1 cut(s) 223
GluI GCNGC 5 cut(s) 175, 201, 220, 660, 761
GsaI CCCAGC 2 cut(s) 189, 690
GsuI CTGGAG 4 cut(s) 66, 87, 876, 1257
HaeIII GGCC 3 cut(s) 398, 760, 901
HapII CCGG 5 cut(s) 329, 408, 747, 902, 1013
HhaI GCGC 1 cut(s) 224
Hin1II CATG 2 cut(s) 713, 1186
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 3 cut(s) 765, 810, 1123
HinfI GANTC 4 cut(s) 1083, 1141, 1219, 1239
HpaII CCGG 5 cut(s) 329, 408, 747, 902, 1013
HphI GGTGA 3 cut(s) 268, 334, 996
Hpy166II GTNNAC 6 cut(s) 361, 403, 721, 1198, 1207, 1264
Hpy188III TCNNGA 3 cut(s) 104, 308, 1138
Hpy8I GTNNAC 6 cut(s) 361, 403, 721, 1198, 1207, 1264
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 5 cut(s) 349, 635, 744, 1064, 1104
HpyCH4III ACNGT 5 cut(s) 229, 608, 700, 926, 1204
HpyCH4IV ACGT 3 cut(s) 131, 244, 987
HpyCH4V TGCA 5 cut(s) 368, 680, 709, 721, 791
HpyF10VI GCNNNNNNNGC 5 cut(s) 87, 134, 404, 883, 1086
HpyF3I CTNAG 6 cut(s) 91, 542, 873, 887, 1085, 1229
HpySE526I ACGT 3 cut(s) 131, 244, 987
Hsp92II CATG 2 cut(s) 713, 1186
HspAI GCGC 1 cut(s) 222
KpnI GGTACC 1 cut(s) 627
KspI CCGCGG 1 cut(s) 663
Kzo9I GATC 3 cut(s) 35, 726, 943
LmnI GCTCC 6 cut(s) 47, 106, 142, 857, 867, 1073
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 3 cut(s) 387, 778, 873
MaeI CTAG 2 cut(s) 1077, 1282
MaeII ACGT 3 cut(s) 131, 244, 987
MaeIII GTNAC 2 cut(s) 905, 1002
MalI GATC 3 cut(s) 37, 728, 945
MboI GATC 3 cut(s) 35, 726, 943
MboII GAAGA 6 cut(s) 21, 45, 61, 68, 296, 905
MflI RGATCY 1 cut(s) 726
MhlI GDGCHC 3 cut(s) 376, 723, 872
MluCI AATT 1 cut(s) 165
MlyI GAGTC 2 cut(s) 1077, 1248
MmeI TCCRAC 3 cut(s) 544, 598, 941
MseI TTAA 1 cut(s) 848
MslI CAYNNNNRTG 1 cut(s) 116
MspA1I CMGCKG 2 cut(s) 662, 854
MspI CCGG 5 cut(s) 329, 408, 747, 902, 1013
MspR9I CCNGG 4 cut(s) 239, 409, 747, 903
MvaI CCWGG 1 cut(s) 239
MvnI CGCG 1 cut(s) 662
MwoI GCNNNNNNNGC 5 cut(s) 87, 134, 404, 883, 1086
NciI CCSGG 3 cut(s) 409, 747, 903
NcoI CCATGG 1 cut(s) 1182
NdeII GATC 3 cut(s) 35, 726, 943
NheI GCTAGC 1 cut(s) 1076
NlaIII CATG 2 cut(s) 713, 1186
NlaIV GGNNCC 6 cut(s) 138, 458, 625, 806, 869, 1226
NmeAIII GCCGAG 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 1002
NspI RCATGY 1 cut(s) 713
OliI CACNNNNGTG 1 cut(s) 116
PaeI GCATGC 1 cut(s) 713
PfeI GAWTC 2 cut(s) 1141, 1219
PflMI CCANNNNNTGG 1 cut(s) 466
PfoI TCCNGGA 2 cut(s) 237, 745
PkrI GCNGC 5 cut(s) 176, 202, 221, 661, 762
PleI GAGTC 2 cut(s) 1077, 1247
PpsI GAGTC 2 cut(s) 1077, 1247
PsiI TTATAA 1 cut(s) 783
Psp6I CCWGG 1 cut(s) 237
PspEI GGTNACC 1 cut(s) 905
PspFI CCCAGC 2 cut(s) 185, 686
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 6 cut(s) 138, 458, 625, 806, 869, 1226
PspPI GGNCC 3 cut(s) 899, 1224, 1261
PstNI CAGNNNCTG 1 cut(s) 880
PsuI RGATCY 1 cut(s) 726
PvuII CAGCTG 1 cut(s) 854
RsaI GTAC 4 cut(s) 181, 605, 610, 625
RsaNI GTAC 4 cut(s) 180, 604, 609, 624
RseI CAYNNNNRTG 1 cut(s) 116
SacII CCGCGG 1 cut(s) 663
SaqAI TTAA 1 cut(s) 848
SatI GCNGC 5 cut(s) 175, 201, 220, 660, 761
Sau3AI GATC 3 cut(s) 35, 726, 943
Sau96I GGNCC 3 cut(s) 899, 1224, 1261
SchI GAGTC 2 cut(s) 1077, 1248
ScrFI CCNGG 4 cut(s) 239, 409, 747, 903
SduI GDGCHC 3 cut(s) 376, 723, 872
SfaNI GCATC 3 cut(s) 387, 778, 873
SfcI CTRYAG 1 cut(s) 1194
Sfr303I CCGCGG 1 cut(s) 663
SgrBI CCGCGG 1 cut(s) 663
SinI GGWCC 2 cut(s) 1224, 1261
SmiMI CAYNNNNRTG 1 cut(s) 116
SphI GCATGC 1 cut(s) 713
Sse9I AATT 1 cut(s) 165
SsiI CCGC 9 cut(s) 140, 174, 177, 219, 657, 660, 662, 761, 1080
SspMI CTAG 2 cut(s) 1077, 1282
StyD4I CCNGG 4 cut(s) 237, 407, 745, 901
StyI CCWWGG 2 cut(s) 951, 1182
TaaI ACNGT 5 cut(s) 229, 608, 700, 926, 1204
TaiI ACGT 3 cut(s) 134, 247, 990
TaqI TCGA 4 cut(s) 471, 633, 1108, 1248
TasI AATT 1 cut(s) 165
TauI GCSGC 4 cut(s) 177, 222, 662, 763
TfiI GAWTC 2 cut(s) 1141, 1219
Tru1I TTAA 1 cut(s) 848
Tru9I TTAA 1 cut(s) 848
TscAI CASTG 3 cut(s) 150, 703, 1207
TseFI GTSAC 1 cut(s) 1002
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 1002
TspDTI ATGAA 2 cut(s) 498, 998
TspGWI ACGGA 1 cut(s) 990
TspRI CASTG 3 cut(s) 150, 703, 1207
Van91I CCANNNNNTGG 1 cut(s) 466
VneI GTGCAC 1 cut(s) 719
VpaK11BI GGWCC 2 cut(s) 1224, 1261
XceI RCATGY 1 cut(s) 713
XmiI GTMKAC 2 cut(s) 360, 1197
XspI CTAG 2 cut(s) 1077, 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.